BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478064
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07460.2 | Symbols: | Protein of unknown function, DUF538 |... 1003 0.0
AT3G07470.1 | Symbols: | Protein of unknown function, DUF538 |... 492 2e-138
> AT3G07460.2 | Symbols: | Protein of unknown function, DUF538
| chr3:2384418-2385713 REVERSE LENGTH=1038
Length=1038
Score = 1003 bits (543), Expect = 0.0
Identities = 659/712 (93%), Gaps = 20/712 (3%)
Strand=Plus/Plus
Query 1 ATAAAAATGTCGTCTTCTTCTTCTTCCTCGCTTAAACCC----ATT-AA----TTCATAG 51
||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1 ATAAAAATGTCGTCTTCTTCTTCTTCCTCGCTTAAACCCATTAATTCAATTTCTTCATAG 60
Query 52 CCAGCAACGAGATCTGGCAAATTCTACCATTCTACTATGCTTCGTGTAGTTCAAATCGCG 111
||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||| ||
Sbjct 61 CCAGCAATAAGATCTGGCAAATTAAACCATTCCACTATGCTTCGTATAGTTCAAATCACG 120
Query 112 CTTCTTTGTTTCGTTCTCGCCGCCAGGATCTCGATCT----C-----CGCCGAGAACGAA 162
|||||||||||||||||||||||| |||||||||||| | ||||||||| |||
Sbjct 121 CTTCTTTGTTTCGTTCTCGCCGCCGGGATCTCGATCTCCGCCGTGATCGCCGAGAATGAA 180
Query 163 TCTATAGACGAGATCCTTCTGGCGAACGGATTGCCTTTGGGGATATTTCCGAAAGGTGTG 222
|||||||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||| |||
Sbjct 181 TCTATAGACGAGATCCTTCTAGCGAATGGATTACCTTTGGGGCTATTTCCTAAAGGCGTG 240
Query 223 AAAGGATTCAGCGTTAATGGCGAAACGGGACGGTTCTCGGTTTATTTGAACCAGTCATGC 282
|||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AAAGGATTTACCGTTAATGGCGAAACGGGACGGTTCTCGGTTTATTTGAATCAGTCATGC 300
Query 283 CAGGCTAAGTATGAGACAGAGCTGCATTACGACGAGATTGTTTCGGGAACGATAGGTTAT 342
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CAGGCTAAGTATGAGACAGAGCTGCATTACGATGAGATTGTTTCGGGAACGATAGGTTAT 360
Query 343 GCTCAAATCGGGGATTTGTCGGGAATCTCAGCGCAAGAGCTGTTCTTGTGGTTTCCGGTT 402
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 361 GCTCAAATCAGGGATTTATCGGGAATCTCAGCGCAAGAGCTGTTCTTGTGGTTACAGGTG 420
Query 403 AAAGGAATCCGAGTCGACGTGCCGAGCTCTGGTCTTATATTCTTCGACGTTGGTGTTCTT 462
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGGAATCCGAGTCGACGTGCCTAGCTCTGGTCTTATATTCTTCGACGTTGGTGTTCTT 480
Query 463 CGCAAGCAGTACTCTTTGTCTTTGTTCGAGACACCGAGAGATTGTGTTGCGGTTCGTAGC 522
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 481 CGCAAGCAATACTCTTTGTCTTTGTTCGAGACACCAAGAGATTGTGTCGCGGTTCGTGGC 540
Query 523 GATGCTGAGTTTATTGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCT 582
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATGCCGAGTTTATTGGTTCAGTCTTCGATGTTGCCATTGTATCAAGTAGATCAAACTCT 600
Query 583 TGGAAGAAATACTGTTTAGCAGGAGTTTAAGAAATGTTGTTATACTATACCAGAAAGATG 642
||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 601 TGGAAGAAACACTGTTTAGCAGGAGTTGAAGAAATGTTGTTATACTATACGAGAAAGATG 660
Query 643 GAAAAGATAGATAGATGCTCTCATCTATTCTTGAAGATACTT-CTACTTGTT 693
|||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 661 GAAAAGATAGATAGATGCTCTCATCTATTCTTGAAGATACTTTCTACT-GTT 711
Score = 159 bits (86), Expect = 3e-38
Identities = 101/108 (94%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 690 TGTTGTTTCTGCATTGCTTTCTCCAGATTGCGTGCGG-GACAGAACCGAGAGAATATGTG 748
|||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct 777 TGTTGTTTCTGCATTGCTTTCTCCAGATTGCGAG-GGTGACAGAACCGAGAGAATCTGTG 835
Query 749 AGCGGAAGTTAGACGGTAACAACAATGTCAGGGTTGGTTCGGAAAAGA 796
||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 836 AGCGGAAGTTAGACGGTAACAACGATGTCAGGATTGGTTTGGAAAAGA 883
> AT3G07470.1 | Symbols: | Protein of unknown function, DUF538
| chr3:2386897-2388471 REVERSE LENGTH=1032
Length=1032
Score = 492 bits (266), Expect = 2e-138
Identities = 511/623 (82%), Gaps = 42/623 (7%)
Strand=Plus/Plus
Query 88 ATGCTTCGTGTAGTTCAAATCGCGCTTCTTTGTTTCGTTCTCGCCGCCAGGATCTCGATC 147
||||||||| | |||||||||||| |||| ||| ||||||||| |||| |||||||||||
Sbjct 132 ATGCTTCGTATTGTTCAAATCGCGTTTCTATGTCTCGTTCTCGTCGCCGGGATCTCGATC 191
Query 148 T-C-CGCCG-----AGA-AC-GA-ATCTATAGACGAGATCCTTCTGGCGAACGGATTGCC 197
| | || || ||| || || | ||||| |||||||||| ||||| |||||||| ||
Sbjct 192 TCCACGGCGATATCAGAGACTGAGA-CTATATACGAGATCCTCCTGGCAAACGGATTACC 250
Query 198 TTTGGGGATATTTCCGAAAGGTGTGAAAGGATTCAGCGTT-AATGGCGAAACGGGACGGT 256
|| ||||||||| ||||||||||| | || ||||| | || | | |||||||||||| |
Sbjct 251 TTCGGGGATATTCCCGAAAGGTGTCAGAGAATTCA-CCTTCGACGTCGAAACGGGACGAT 309
Query 257 TCTCGGTTTATTTGAACCAGTCATGCCAGGCTAAGTATGAGACAGAGCTGCATTACGACG 316
|||||||||||||||| ||| ||||| ||||||| || ||||| ||| | ||||||||||
Sbjct 310 TCTCGGTTTATTTGAATCAGGCATGCGAGGCTAAATACGAGACTGAGATACATTACGACG 369
Query 317 AGATTGTTTCGGGAACGATAGGTTATGCTCAAATCGGGGATTTGTCGGGAATCTCAGCGC 376
| | || |||| || ||||||| |||||||||| |||||||| |||||||| ||||
Sbjct 370 CCAATATTACGGGGACTATAGGTTCTGCTCAAATCTCTGATTTGTCTGGAATCTCGGCGC 429
Query 377 AAGAGCTGTTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGCTCTGGTC 436
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 430 AAGAGCTATTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTC 489
Query 437 TTATATTCTTCGACGTTGGTGTTCTTCGCAAGCAGTACTCTTTGTCTTTGTTCGAGACAC 496
|||||| |||||||||||||||| |||| ||||| || |||||||||||||||||||| |
Sbjct 490 TTATATACTTCGACGTTGGTGTTGTTCGAAAGCAATATTCTTTGTCTTTGTTCGAGACTC 549
Query 497 CGAGAGATTGTGTTGCGGTTCGTAGCGATGCTGAGTTTATTGGTTCAGTCTTCGATGTTG 556
|||||||||| ||| |||||||| | ||| | | | |||| | | ||||
Sbjct 550 CGAGAGATTGCGTTCCGGTTCGTGG-GATTCACA----A--GGTT--G------A-GTTG 593
Query 557 CCATTGTATCAAGTAGATCAAACTCTTGGAAGAAATA-CTGTTTAGCAGGAGTTT-AA-G 613
|||||||| | ||||||||||| |||||| ||||| | | ||||||| |||||| || |
Sbjct 594 CCATTGTACCGAGTAGATCAAAATCTTGGGAGAAACATCA-TTTAGCAAGAGTTTTAAAG 652
Query 614 AAATGTTGTTATACTATACCAGAAAGAT-GGAAAAGATAGATAGATGCTC-TCA-TCTAT 670
|| |||||| |||| |||||||||||| |||| ||||||| | | ||| ||| || ||
Sbjct 653 AATTGTTGT-ATACCATACCAGAAAGAAAGGAA--GATAGAT-GTT-CTCATCAATCAAT 707
Query 671 TCTTGAAGATACTTCTACTTGTT 693
||||||||||||||| ||| |||
Sbjct 708 TCTTGAAGATACTTCAACT-GTT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5