BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478066
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07470.1 | Symbols: | Protein of unknown function, DUF538 |... 1491 0.0
AT3G07460.2 | Symbols: | Protein of unknown function, DUF538 |... 508 3e-143
> AT3G07470.1 | Symbols: | Protein of unknown function, DUF538
| chr3:2386897-2388471 REVERSE LENGTH=1032
Length=1032
Score = 1491 bits (807), Expect = 0.0
Identities = 946/1009 (94%), Gaps = 26/1009 (3%)
Strand=Plus/Plus
Query 1 tcttcttcttcttcttcttcCCTTAAACCCATTGATTCAATTTCCTAATAAACGAGC--A 58
|||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 21 TCTTCTCCTTCTTCGTCTTCCCTTAAACCCATTAATTCAATTTCCTGATAAACGAGCAGA 80
Query 59 GAGAGATCTCG-CGAAATCACCAACCGTGAATTCGGGAAGAATAAG--G-CGATGCTTCG 114
||||||||| | | ||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 81 GAGAGATCT-GTCAAAATCACAAACCGTGAATTCGGGAAGAATAAGCCGATGATGCTTCG 139
Query 115 TATTGTTCAAATCGCGTTTCTGTGTCTCGTTCTCGTCGCCGGGATCTCGATCTCCTCGGC 174
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 140 TATTGTTCAAATCGCGTTTCTATGTCTCGTTCTCGTCGCCGGGATCTCGATCTCCACGGC 199
Query 175 GATATCAGAGACCGAGACTATATACGAGATCCTCAC-GGCTAACGGATTGCCGTCGGGGA 233
|||||||||||| ||||||||||||||||||||| | ||| |||||||| || |||||||
Sbjct 200 GATATCAGAGACTGAGACTATATACGAGATCCTC-CTGGCAAACGGATTACCTTCGGGGA 258
Query 234 TATTCCCGAAAGGCGTCAGAGAATTCAACTTCGACGTCGAAACGGGACGGTTCTCGGTTT 293
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 259 TATTCCCGAAAGGTGTCAGAGAATTCACCTTCGACGTCGAAACGGGACGATTCTCGGTTT 318
Query 294 ATTTGAATCAGTCATGCGAGGCCAAATACGAGACTGAGCTACATTACGACGCCAATATTA 353
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 319 ATTTGAATCAGGCATGCGAGGCTAAATACGAGACTGAGATACATTACGACGCCAATATTA 378
Query 354 CAGGGACTATAGGGTCTTCTCAAATCTCGGATTTGTCTGGAATCTCGGCGCAAGAGCTGT 413
| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 379 CGGGGACTATAGGTTCTGCTCAAATCTCTGATTTGTCTGGAATCTCGGCGCAAGAGCTAT 438
Query 414 TCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTCTTATATACT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGGTCTTATATACT 498
Query 474 TCGACGTTGGTGTTGTTCGAAAGCAGTACTCTTTGTCTTTGTTCGAGACACCGAGAGATT 533
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 499 TCGACGTTGGTGTTGTTCGAAAGCAATATTCTTTGTCTTTGTTCGAGACTCCGAGAGATT 558
Query 534 GCGTTCCGGTTCGTGAGATTCACAAGGTTCAGTTGCCATTGTATCGAGTAGATCAAAATC 593
||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 559 GCGTTCCGGTTCGTGGGATTCACAAGGTTGAGTTGCCATTGTACCGAGTAGATCAAAATC 618
Query 594 TTGGGAGAAGCATCATTTAGCAAGAGTTTTA-----T------A--CCATACCAGAAAGA 640
||||||||| ||||||||||||||||||||| | | ||||||||||||||
Sbjct 619 TTGGGAGAAACATCATTTAGCAAGAGTTTTAAAGAATTGTTGTATACCATACCAGAAAGA 678
Query 641 AAGGAAGATAGATGTTCTCATCAAT---T-CTTGAAGATACTTCAACTGTTTTGGTCTCA 696
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 679 AAGGAAGATAGATGTTCTCATCAATCAATTCTTGAAGATACTTCAACTGTTTTGGTCTCA 738
Query 697 AATCTTAGGCATGATTCAAAATCAAATTGCTTCATTCTTTCCCTCCCCATTCCAGTTTTG 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AATCTTAGGCATGATTCAAAATCAAATTGCTTCATTCTTTCCCTCCCCATTCCAGTTTTG 798
Query 757 TTTCTGTATTTCGTTCTCAGATTAGGCCGGGGACTGAACCGTGGAGAGAATCTGTGGTTT 816
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 799 CTTCTGTAATTCGTTCTCAGATTAGGCCGGGGACTGAACCGAGGAGAGAATCTGTGGTTT 858
Query 817 TGAAAAGATGCTAAAGGGATGGCCCAGATTTTGTTGAAGTGATGATAACTGTGAGGTGAT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TGAAAAGATGCTAAAGGGATGGCCCAGATTTTGTTGAAGTGATGATAACTGTGAGGTGAT 918
Query 877 GAATGTTTTGTGTTGTATTCTTGTGTCATGTCTAAAACAGATATAATAAATCCTATATTT 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAATGTTTTGTGTTGTATTCTTGTGTCATGTCTAAAACAGATATAATAAATCCTATATTT 978
Query 937 TGCCAAATAAGTGTTATAGAAATTTGGCAATTTGCAATCATTTCCCTTT 985
||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 979 AGCCAAATAAGTGTTATAGAAAATTGGCAATTTGCAATCATTTCTCTTT 1027
> AT3G07460.2 | Symbols: | Protein of unknown function, DUF538
| chr3:2384418-2385713 REVERSE LENGTH=1038
Length=1038
Score = 508 bits (275), Expect = 3e-143
Identities = 603/752 (80%), Gaps = 59/752 (8%)
Strand=Plus/Plus
Query 107 ATGCTTCGTATTGTTCAAATCGCGTTTCTGTGTCTCGTTCTCGTCGCCGGGATCTCGATC 166
||||||||||| ||||||||| || |||| ||| ||||||||| ||||||||||||||||
Sbjct 97 ATGCTTCGTATAGTTCAAATCACGCTTCTTTGTTTCGTTCTCGCCGCCGGGATCTCGATC 156
Query 167 TCCTCGGCGATATCAGAGACCGAGA-CTATATACGAGATCC-TCACGGCTAACGGATTGC 224
||| | | ||| | |||| || | ||||| ||||||||| || || || ||||| |
Sbjct 157 TCCGCCGTGATCGCCGAGAATGA-ATCTATAGACGAGATCCTTC-TAGCGAATGGATTAC 214
Query 225 CGTCGGGGATATTCCCGAAAGGCGTCAGAGAATTCAAC-TTCGACGTCGAAACGGGACGG 283
| | |||| |||| || |||||||| | || ||| | | || | | |||||||||||||
Sbjct 215 CTTTGGGGCTATTTCCTAAAGGCGTGAAAGGATTTACCGTT-AATGGCGAAACGGGACGG 273
Query 284 TTCTCGGTTTATTTGAATCAGTCATGCGAGGCCAAATACGAGACTGAGCTACATTACGAC 343
||||||||||||||||||||||||||| |||| || || ||||| ||||| ||||||||
Sbjct 274 TTCTCGGTTTATTTGAATCAGTCATGCCAGGCTAAGTATGAGACAGAGCTGCATTACGAT 333
Query 344 GCCAATATTACAGGGA-CTATAGGGTCTTCTCAAATCTCGGATTTGTCTGGAATCTCGGC 402
| | | || | |||| | ||||| | | |||||||| |||||| || |||||||| ||
Sbjct 334 GAGATTGTTTC-GGGAACGATAGGTTATGCTCAAATCAGGGATTTATCGGGAATCTCAGC 392
Query 403 GCAAGAGCTGTTCTTGTGGTTTCCGGTTAAAGGAATCCGAGTCGACGTGCCGAGTTCTGG 462
||||||||||||||||||||| | ||| ||||||||||||||||||||||| || |||||
Sbjct 393 GCAAGAGCTGTTCTTGTGGTTACAGGTGAAAGGAATCCGAGTCGACGTGCCTAGCTCTGG 452
Query 463 TCTTATATACTTCGACGTTGGTGTTGTTCGAAAGCAGTACTCTTTGTCTTTGTTCGAGAC 522
|||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 453 TCTTATATTCTTCGACGTTGGTGTTCTTCGCAAGCAATACTCTTTGTCTTTGTTCGAGAC 512
Query 523 ACCGAGAGATTGCGTTC-CGGTTCGTGA-GATTCAC-A----A--GGTTCAGT-T--G-- 568
||| |||||||| || | ||||||||| ||| | | | | |||||||| | |
Sbjct 513 ACCAAGAGATTGTGT-CGCGGTTCGTGGCGATGC-CGAGTTTATTGGTTCAGTCTTCGAT 570
Query 569 ----CCATTGTATCGAGTAGATCAAAATCTTGGGAGAAGCA-TCATTTAGCA--AG---A 618
|||||||||| ||||||||||| |||||| |||| || | ||||||| || |
Sbjct 571 GTTGCCATTGTATCAAGTAGATCAAACTCTTGGAAGAAACACTG-TTTAGCAGGAGTTGA 629
Query 619 -G---T-TT-T-ATACCATACCAGAAAGA---AAG-GA-AGATAGATGTTCTCATCAATT 666
| | || | |||| |||| ||||||| || || ||||||||| ||||||| |||
Sbjct 630 AGAAATGTTGTTATACTATACGAGAAAGATGGAAAAGATAGATAGATGCTCTCATCTATT 689
Query 667 CTTGAAGATACTT-CAACTGTTTTGGTCTCAAATCTTAGGCATGATTCAAAATCAAATTG 725
||||||||||||| | ||||||||| ||||||||||||||||||||||| ||| || |
Sbjct 690 CTTGAAGATACTTTCTACTGTTTTGATCTCAAATCTTAGGCATGATTCATGGTCAGAT-G 748
Query 726 CTTCATTCTTTCCCT-CCCC-ATTCCAGTTTTGTTTCTGTATTTCGTTCTC-AGATTAG- 781
||||||||||||||| |||| || ||||| ||||||||| ||| | ||||| ||||| |
Sbjct 749 CTTCATTCTTTCCCTTCCCCCATCCCAGTGTTGTTTCTGCATTGCTTTCTCCAGATT-GC 807
Query 782 GCCGGG-GACTGAACCGTGGAGAGAATCTGTG 812
| ||| ||| |||||| ||||||||||||
Sbjct 808 GA-GGGTGACAGAACCG---AGAGAATCTGTG 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5