BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478067
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07480.1 | Symbols: | 2Fe-2S ferredoxin-like superfamily pr... 1147 0.0
> AT3G07480.1 | Symbols: | 2Fe-2S ferredoxin-like superfamily
protein | chr3:2388952-2389811 FORWARD LENGTH=860
Length=860
Score = 1147 bits (621), Expect = 0.0
Identities = 701/739 (95%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 1 CTCCGACCAAAAATTGGGGAACGACGATGGCGACGACTCTCCAGAAACTCTCCTCTCAAA 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 49 CTCCGACCAAAAATTGGGGAACGACGATGGCGACGACTCTTCAGAAACTCTCCTCTCAAA 108
Query 61 TCCACCGCCTGTCTCCATTCACCAGATCCCTAATCGTTCGCACCTCCGCCACATCTGCTC 120
||||||| || ||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 109 TCCACCGACTCTCTCCATTCACCAGATCTCTAATCGTTCGCACATCCGCAACGTCTGCTC 168
Query 121 CTTCTCCGTCTCTGGGATCTAAGAAAGTCTCCGACCGAATCGTCAAGCTTTCTGCGATCG 180
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 169 CTTCTCCGTCTCTGGGATCGAAGAAAGTCTCTGACCGAATCGTCAAGCTTTCTGCGATCG 228
Query 181 ATCCCGATGGATACAAGCAGGACATCATTGGACTTTCCGGCCAGACTCTTCTGCGTGCGC 240
|||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||
Sbjct 229 ATCCCGATGGATACAAGCAGGACATCATTGGACTCTCTGGCCAGACTCTCCTTCGTGCGC 288
Query 241 TCACTCACACTGGTCTGATCGATCCAGCATCTCATAGATTGGATGACATCGAGGCTTGCT 300
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 289 TCACTCACACTGGTCTGATAGATCCAGCATCGCATAGATTGGATGACATCGAGGCTTGCT 348
Query 301 CAGCGGAGTGCGAGGTTCAGATCGCAGAGGAATGGCTCGAGAAGCTCCCGCCGCGTACCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 349 CAGCGGAGTGCGAGGTTCAGATCGCAGAGGAATGGCTCGAGAAGCTCCCGCCGCGTACTT 408
Query 361 ACGACGAGGAGTATGTGCTGAAGCGTAGCTCTAGATCCCGTATCCTGAACAAACACTCGC 420
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 409 ACGATGAGGAGTATGTGCTGAAGCGTAGCTCTAGATCCCGTATCTTGAACAAGCACTCGC 468
Query 421 GTCTTGGTTGCCAAGTTGTGTTAACGCAGGAGCTTCAAGGTATGGTCGTCGCTGTCCCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GTCTTGGTTGCCAAGTTGTGTTAACGCAGGAGCTTCAAGGTATGGTCGTCGCTGTCCCTG 528
Query 481 AAGCTAAGCCTTGGGATATTCCGTAAGtttttttttttCTTAAGGCTCTCATAAATGTTG 540
|||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||
Sbjct 529 AAGCTAAGCCTTGGGATATTCCGTAAGTTTTTGTT---CTTGAGGATCTCATAAATGTTG 585
Query 541 GGCTCGTTCTCAAATTGGCTAATAAATTTCTCTTTGGAAATTTCGGTACTCTGCAGATAA 600
|| |||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 586 GGTTCGTTCTCAATTTGGCTAATAAAATTCGCTTTGGAAATTTCGGTACTCTGAAGATAA 645
Query 601 CTCCATTTGAATCTGTAATTT-CGTTTCCTTAC-TTTAAATTTTTGTAATGTGGTAAAGA 658
||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||
Sbjct 646 CTCCATTTGAATCTGTAATTTTCGTTTGCTTACATTTAAATTTT-GTAATGTGGTAAAGA 704
Query 659 ACTTTGCTTGTTTAAACGATTTCCCTGCTTCAAGTATGGGTGAATGTTGCTTTCTTGATT 718
||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 705 ACTCTGCTTGTTTAAACGATT-CCCTGCTTCAAGTATGGGTGAATGTTGTTTTCTTGATT 763
Query 719 TCATTTTCATTGCTTCTTC 737
|||||||| ||||||||||
Sbjct 764 TCATTTTCGTTGCTTCTTC 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5