BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478070
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1448 0.0
AT3G07500.1 | Symbols: | Far-red impaired responsive (FAR1) fa... 117 2e-25
> AT3G07510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G01580.1);
Has 133 Blast hits to 133 proteins in 14 species: Archae -
0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2393691-2394675
REVERSE LENGTH=898
Length=898
Score = 1448 bits (784), Expect = 0.0
Identities = 857/892 (96%), Gaps = 6/892 (1%)
Strand=Plus/Plus
Query 2 TTTCCGACAAGCTCTCTTTTTAAGACAATCAATCTCTTTCTTCAAACTAAGCCCCGACCA 61
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct 8 TTTCCGACAAGCTCTCTCTTTAAGACAATCCATCTCTTTCTTCAAGCTAAGCCCCGACGG 67
Query 62 AAAGCT-AACACATTGCTTAATTAGATTCCCTCATATCTGAGCCGAAGGTTAACTACATG 120
|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 68 AAAGCTAAACTCATTGCTTAAATAGATTCCCTCATATCTGAGCCGAAGGTTAACTACATG 127
Query 121 ACCGGCGTTGAAAACGGCGTGAGAATGACGTCACCAGAGACGTCTTCAACATCCTCCCTC 180
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 128 ACCGGCGCTGAGAACGGCGTGAGAATGACGTCACCAGAGGCGTCTTCAACATCCTCCCTC 187
Query 181 GCCACCACAAGTGTCCACGTAAGCGCTCTCGACGGACTCGTGAACGTGAACTCTCTCTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GCCACCACAAGTGTCCACGTAAGCGCTCTCGACGGACTCGTGAACGTGAACTCTCTCTTC 247
Query 241 ACCATCGCCGTCTTCGTTGGTCTTTCCTTAGCGACTCCAGGACAACACAGCCTCGAACAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ACCATCGCCGTCTTCGTTGGTCTTTCCTTAGCGACTCCAGGACAACACAGCCTCGAACAA 307
Query 301 CGATCCAGCTGCGATGCAAGTGCTGACGTGGCCAAGAAGCTACTCGTCTTCGAAGTCGTC 360
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 308 CGATCCAGCTGCGACGCAAGTGCTGACGTCGCCAAGAAGCTACTGGTCTTCGAAGTCGTC 367
Query 361 TCCTTCAGCTTCTTCCTCTTCTCCTCTCTCGTAGCTCAGGGTCTTAAGCTTGCCTTAAAC 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 368 TCCTTCAGCTTCTTCCTCTTCTCCTCTCTTGTAGCTCAGGGTCTTAAGCTTGCCTTAAAC 427
Query 421 CTTCTTAATAGCAAAGACGTCAACGAGATTTTCAGAGCTCACATCAATATCAAGGTTTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CTTCTTAATAGCAAAGACGTCAACGAGATTTTCAGAGCTCACATCAATATCAAGGTTTTG 487
Query 481 AGATGGGGAATGATGGCTTCTGCTGTCGGATCTGTCATGGGCTGTCTCTTCTTGATGCTC 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 488 AGATGGGGAATGATGGCTTCTGCTGTCGGATCTGTAATGGGCTGTCTCTTCTTGATGCTC 547
Query 541 TCTATGGTTAATGTGATTCAGATCCGTCTTGGTTTGCTCTCTTGCGGCAGCAAATCGGCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCTATGGTTAATGTGATTCAGATCCGTCTTGGTTTGCTCTCTTGCGGCAGCAAATCGGCG 607
Query 601 GCTCAAGCGGTTGCAACGCTCGTCACTCTGGTTTCCTCTGCTCTGCTGATTTACATCTCT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCTCAAGCTGTTGCAACGCTCGTCACTCTGGTTTCCTCTGCTCTGCTGATTTACATCTCT 667
Query 661 ACCGCCATTTACGCTTTCTGGCATTGATACTGCTCTGTCAAAATTGGATAATGTCCATGG 720
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 668 ACCGCCATTTACGCTTTCTGGCATTGAT---GCTATGTCAAAATTGGATAATGTCCATGG 724
Query 721 CTTTATTTTGATTAGCCAGTGTGTAATTTCATCATCAATGCCTTTCAATCTTGTTTTCTT 780
|||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 725 CTTTGTTTTGATTAGCCAATGTGTAATTTCATCATCAATGCCTTCCAATCTAGTTTT-TT 783
Query 781 CTTTGTTTGTTTCGGAGAATGAAGAATCAATCACAAGAGaaaaaaaCATTGGATTAAGAA 840
||| ||||||||||||||||||||||||||||||||| | | || |||||||||| ||
Sbjct 784 GTTTTTTTGTTTCGGAGAATGAAGAATCAATCACAAGATACAGAA-CATTGGATTATGAG 842
Query 841 AATTTGATGTTAAGCTTTTATGAACAGAAATGAAGCATTATGTTTGCTGTTT 892
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 843 AATTTGATGTTAAGCTTTTATGAACAGAAATGAAGCATTATGTTTGTTGTTT 894
> AT3G07500.1 | Symbols: | Far-red impaired responsive (FAR1)
family protein | chr3:2392287-2393778 FORWARD LENGTH=823
Length=823
Score = 117 bits (63), Expect = 2e-25
Identities = 78/85 (92%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 808 CAATCACAAGAGaaaaaaaCATTGGATTAAGAAAATTTGATGTTAAGCTTTTATGAACAG 867
||||||||||| | | |||||||||||| || |||||||||||||||||||||||||||
Sbjct 823 CAATCACAAGA-TACAGAACATTGGATTATGAGAATTTGATGTTAAGCTTTTATGAACAG 765
Query 868 AAATGAAGCATTATGTTTGCTGTTT 892
||||||||||||||||||| |||||
Sbjct 764 AAATGAAGCATTATGTTTGTTGTTT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5