BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478076
Length=2812
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07540.1 | Symbols: | Actin-binding FH2 (formin homology 2)... 4170 0.0
> AT3G07540.1 | Symbols: | Actin-binding FH2 (formin homology
2) family protein | chr3:2404509-2407541 REVERSE LENGTH=2857
Length=2857
Score = 4170 bits (2258), Expect = 0.0
Identities = 2669/2859 (93%), Gaps = 61/2859 (2%)
Strand=Plus/Plus
Query 1 TAGCATTAAGTCACTCTTTCATCCTCAGATAGTGCGCATTGCAGAACACAAAA-CTCTCC 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 3 TAGCATTAAGTCACTCTTTCGTCCTCAGATAGTGCGCATTGCAGAACACAAAATCTCTAC 62
Query 60 AAGAAAACCCCAAAAATGGACGGACTTTGCTACG---------TCATCTTCTCCCTACTA 110
|||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 63 AAGAAAACCCCAAAAATGGACGGACTTTGCTACGTCATCTTCATCATCTTCTCCCTGCTA 122
Query 111 TCTTGCGCTTCCTCTCCCTTATCATACGCTTCTCCGGCCACTTTCAGTCGCCGTCACCTT 170
|| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 123 TCCTGCGCTTTCTCTCCCTTATCATACGCCTCTCCGGCCACTTTCAGTCGCCGTCACCTT 182
Query 171 CTACAAGCTCCTCCT-ACTGATCCTTCCACATTCTCGCCGCCATTCTTCCCACTTTACAG 229
|| ||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 183 CTTCAAGCTCCT-GTAACTGATCCTTCCACATTCTCACCGCCGTTCTTCCCACTTTACAG 241
Query 230 ctcc-tc-ct-ctcctcctcct-c-T-TCCACCGCA---------GCCTCCCGCCCCCAC 274
|||| | || ||||||||||| | | ||| ||||| |||||||||||||||
Sbjct 242 CTCCACCTCTCCTCCTCCTCCTCCTTCTCCGCCGCAGCCTCTTCCGCCTCCCGCCCCCAC 301
Query 275 TTTTGCGACATTCCCGGCGAACATATCCGCCCTTGTCCTCCCTCGCTCCCCTAAACCGCA 334
|||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 302 TTTTGCGACATTTCCGGCGAACATCTCCGCTCTCGTCCTCCCTCGCTCCCCTAAACCGCA 361
Query 335 AACTTCTTCCCGTACACTCCTTGTCCCTGCTATCTCCGCCGTGCTCGCCGTCGCAACACT 394
|||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
Sbjct 362 AACTCCTTCCCGTACACTCCTTATTCCTGCTATCTCCGCCGTGCTCGCCGCCGCAACATT 421
Query 395 AATCGCCTTGGCCTTCTTTC-TCTACGGACGGTGGCGAGGACAAATCC-GTCATTTCAAA 452
||||||||||||||| |||| ||||||||||||||||||| |||| || |||||||||||
Sbjct 422 AATCGCCTTGGCCTT-TTTCTTCTACGGACGGTGGCGAGGGCAAA-CCAGTCATTTCAAA 479
Query 453 GACGAATCCAAGAGCTTAGCTTCAG-----A-CCAATCCCAACAACAAACTCTTCCATGT 506
|| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 480 GATGAATCCAAGAGCTTAGCTTCAGACATTAGCCAATCCCAACAACAAACTCTTCCATGT 539
Query 507 CCCCCTCCAAGAAACAACACCGCTGAAAACAAACTCTCTGTGGCTCCTTCTACCTCCGAT 566
||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||
Sbjct 540 CCCCCTCCAAGAAACAACAACACTCAAAACAAACTCTCTGTAGCTCCTTCTACCTCCGAT 599
Query 567 GTTCTCTACCTCGGCAACGTCGTCACTTCCTCCGGGTCGGGTTTCGTCAAACCGGAGTCA 626
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 600 GTTCTCTACCTCGGCAACGTCGTCACTTCCTCCGGGTCGGGTTTTGTTAAACCGGAGTCA 659
Query 627 CCGGAGATCTCTCCTCTCCCGCCATTACCTGCTCGTAGCTTCCTCCTGCAACATAACTCT 686
|| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 660 CCAGATATCTCTCCTCTCCCGCCATTACCTGCCCGTAGCTTCCTCCTGCAACATCACTCT 719
Query 687 GAAGCTAATCTTGATgaagaagaagaagaagaCGACGACTTTTACTCGCCTCTCGCGTCT 746
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGCTAATCTTGAT---GAAGAAGAAGAAGACGACGACTTTTACTCGCCTCTCGCGTCT 776
Query 747 GTAGCTGGTCAAGAATCACGAGACCGAAGAATTAATCCGTACAGTAACTGCTCTTGCTCT 806
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 777 ATAGCTGGTCAAGAATCACGAGACCGGAGAATCAATCCGTACAGTAACTGTTCTTGCTCT 836
Query 807 ATCTCTTCACACTCGGATTCTCCGGCAATGTCACCGTCCGCTACGATTTCTCCGCCGATG 866
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||
Sbjct 837 ATCTCTTCACACTCGGATTCTCCGGCAATGTCACCGTCAGCTGCGATGTCTCCACCGATG 896
Query 867 AACTCTACGGCTCCTCATTGGTCAACT-ACTCAAAACCCTCAATCTCCGTCGTCGCCGGA 925
||||| |||||||| |||||||||||| || |||||| |||| |||||||||||||||||
Sbjct 897 AACTCGACGGCTCCACATTGGTCAACTAAC-CAAAACACTCACTCTCCGTCGTCGCCGGA 955
Query 926 GAGAACAGTAAGGAACAACAAGAGATATGGTGGGGC-GTCTCTGAGAATGTTTAGCCTCT 984
|||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||
Sbjct 956 GAGAACAGTAAGGAACAATAAGAGATATGGT-GGGCAGTCGCTGAGAATGTTTAGCCTCT 1014
Query 985 GGAATCAAAATCTAGGGTTTCCAAGAATTTCCTCTGCTTCTACTTCACCAGAGAGAGGTA 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GGAATCAAAATCTAGGGTTTCCAAGAATTTCCTCTGCTTCTACTTCACCAGAGAGAGGTA 1074
Query 1045 TGATTAGAACTCCTGACGCATACGCTCGTTCTTCTATGTACTCTTCAGTTTCCACTACGC 1104
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1075 TGATTAGAACTCCAGACGCATATGCTCGTTCTTCTATGTACTCTTCAGTTTCCACCACGC 1134
Query 1105 CGGATCGGTTTTTCCGGAAGGTTCTTGATAGTTCGCCGCCGAGATGGAACGATTTCAGTC 1164
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CGGATCGGTTTTTCCGCAAGGTTCTTGATAGTTCGCCGCCGAGATGGAACGATTTCAGTC 1194
Query 1165 GAAATGTCAAGTCTTTGTTTCTTTCTTCCACTTCTGCGTCACCTGCTAGAGATTTTTGTA 1224
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1195 GAAATGTCAAGTCTTTGTTTCTTTCTTCAACTTCTGCATCACCTGCTAGAGATTTTTGTA 1254
Query 1225 TCAACATCTCTGAGTCTTCAAGAAGTTTGAAATCTTCTTGGGAAAATCCTGAGCTTGATA 1284
||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1255 TCAACATCTCTGAATCTTCTAGAAGTTTGAAATCTTCTTGGGAAAAACCAGAGCTTGATA 1314
Query 1285 CAACTGAACAGAGAGAATCGTC---TGCTGCTGTTACTCTTCCTCCTCCACAACGGCCAC 1341
||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 1315 CAACTCAACAGAGAGAATCGGCCGCTGCTGCTGTTACTCTTCCTCCTCCACAACGACCAC 1374
Query 1342 CGCCGGCAATGCCGGAGCCGCCTCCTCTTGTGCCACCGTCACAGTCTTTTATGGTTCAGA 1401
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CACCGGCAATGCCTGAGCCACCTCCTCTTGTGCCACCGTCACAGTCTTTTATGGTTCAGA 1434
Query 1402 AATCTGGaaaaaaaCTATCTTTCTCGGAGTTACCACAGAGTTGTTGGGAAGGAACAACAG 1461
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1435 AATCTGGAAAAAAGCTATCTTTCTCGGAGTTACCACAGAGTTGTGGGGAAGGAACAACAG 1494
Query 1462 AGCGACCAAAGCCAAAGCTGAAACCTCTGCCTTGGGACAAAGTCCGACCAAGTTCTCGCC 1521
| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1495 ATCGACCTAAGCCAAAGCTGAAACCTTTGCCTTGGGACAAAGTCCGACCAAGTTCTCGTC 1554
Query 1522 GGGCAACTACTTGGGACCGTCTTCCGTACAACTCTTCAAATGCTAACTCAAAACAGAGAA 1581
|| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1555 GGACAAATACTTGGGACCGTCTTCCATACAACTCTTCAAATGCTAACTCTAAACAGAGAA 1614
Query 1582 GTCTTAGCTGTGATCTTCCAATGCTAAATCAAGAGAGCAAAGTTTTGGATCCAAGGAAGA 1641
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GTCTTAGCTGTGATCTTCCGATGCTAAATCAAGAGAGCAAAGTTTTGGATCCAAGGAAGA 1674
Query 1642 GTCAAAATGTTGCTATTCTGCTTACAACACTCAAGCTTACCACAAATGATGTTTGTCAGG 1701
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1675 GTCAAAATGTTGCTGTTCTGCTTACAACACTTAAGCTCACCACAAATGATGTTTGTCAGG 1734
Query 1702 CCCTTCGAGATGGTCACTATGATGCACTTGGAGTTGAGCTTCTTGAGAGTTTAGCAAGAG 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CCCTTCGAGATGGTCACTATGATGCACTTGGAGTTGAGCTTCTTGAGAGTTTAGCAAGAG 1794
Query 1762 TGGCACCAAGCgaagaagaagagaagaagttgaagaGCTATAATGATGATTCAGTGATCA 1821
||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1795 TGGCACCGAGCGAAGAAGAAGAGAAGAAGTTGATTAGCTATAGTGATGATTCAGTGATCA 1854
Query 1822 AGCTTGCCCCATCAGAGAGGTTTCTCAAGGAATTGCTTAATGTGCCTTTCGTGTTCAAAA 1881
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1855 AGCTTGCTCCATCAGAGAGGTTTCTCAAGGAATTGCTTAATGTTCCTTTCGTGTTCAAAC 1914
Query 1882 GGGTTGATGCATTACTCTCTGTTGCTAGTTTTGACTCAAAAGTCAA-CTACTTGAATAGA 1940
||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |||
Sbjct 1915 GGGTTGATGCATTGCTCTCTGTTGCTAGTTTTGACTCCAAAGTCAAAC-ACTTGAAAAGA 1973
Query 1941 TCATTCGGCGTTATACAGGCTGCTTGTGAGGCACTGCGAAATAGCAGAATGTTATTGAGA 2000
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TCATTCAGCGTTATACAGGCTGCTTGTGAGGCACTGCGAAATAGCAGAATGTTATTGAGA 2033
Query 2001 CTTGTTGGAGCTACCTTGGAGACAGGAATGAAGAGCGGGAATGCTCATGACTTCAAACTT 2060
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2034 CTTGTTGGAGCTACCTTGGAGGCTGGAATGAAGAGCGGGAATGCTCATGACTTCAAACTT 2093
Query 2061 GAGGTGCTCCTCAAGC-TTGTCAATATCAAATCGTTAGATGGAAGAACCAGTATCTTGGA 2119
|||| ||||||| || ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2094 GAGGCGCTCCTCG-GCCTTGTCGATATCAAATCGTCAGATGGAAGAACCAGTATCTTGGA 2152
Query 2120 TTCTGTTGTACAGAAGATCACTGAATCAGAAGGCTTCAAAGGGCTACAAGTTGTCAGAAA 2179
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2153 TTCTGTTGTACAGAAGATCACTGAATCAGAAGGAATCAAAGGGCTACAAGTTGTCAGAAA 2212
Query 2180 TCTCAGTTCAGTTCTTGACGATGTCAAGAAATCTGCAGAAGT-GGACTATGGTGTTTTAA 2238
|||||||||||||||| |||||| ||||||||||||||| || |||||| |||||| |||
Sbjct 2213 TCTCAGTTCAGTTCTTAACGATGCCAAGAAATCTGCAGA-GTTGGACTACGGTGTTGTAA 2271
Query 2239 GAAGCGA-TGTCTCAAAGCTTTATGAAGAAGTTCAGAAAATTAGTGAGGTTCTACTACTG 2297
||| || ||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2272 GAAT-GAATGTGTCAAAGCTTTATGAAGAAGTTCAGAAAATTAGTGAGGTTCTGCGACTG 2330
Query 2298 TGTGAGGAGGCTGGACATAATGAGGAGCACCAATGGTGGAAATTCAGGGAGTCGATGACC 2357
||||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |||||
Sbjct 2331 TGTGAGGAGACTGGACACAGTGAGGAACACCAATGGTGGAAATTCAGGGAGTCGGTGACC 2390
Query 2358 CGATTCTTGGAAACTGCTGCAGAGGAGATTAAAAAGATTGAAAGAGAAGAAGGTTCCACG 2417
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2391 AGATTCTTGGAAACTGCTGCTGAGGAGATTAAAAAGATTGAAAGAGAAGAAGGTTCCACG 2450
Query 2418 CTCTTTGCAGTGAAAAAGATAACAGAGTATTTCCATGTTGATCCAGCAAAGGAAGAAGCT 2477
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2451 CTCTTTGCAGTGAAAAAGATAACAGAGTATTTCCATGTTGATCCTGCAAAGGAAGAAGCT 2510
Query 2478 CAACTATTGAAAGTATTCGTAATCGTGAGAGACTTTTTAAAAATTCTAGAGGGAGTATGC 2537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 CAGCTATTGAAAGTATTCGTAATCGTGAGAGACTTTTTAAAAATTCTAGAGGGAGTATGC 2570
Query 2538 AAGAATATGGAGGTGACTAGTACTCTGGCTTAGATTTCTTGTGTCATAAAGATCCTAGGA 2597
||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 2571 AAGAAGATGGAGGTGACTAGTTCTCTGGCTTAGATGTC--GTGTCATAAAGATCCTAGGA 2628
Query 2598 TCTGTCCAAGACTAATGTATTGTGTTACCT--ATAAGTTATGTACTTATATGTTTGTATG 2655
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2629 TCTGTCCAAGACTAATGTATTGTGTTACCTTTATAAGTTATGTACTTATATGTTTGTATG 2688
Query 2656 AATCGTTGGAG--CTACGTTGTATGTAGAGAGATGCAACTTTTATAAACATATAAATGGC 2713
||||||||||| |||||||||||||| | ||||||| |||||| |||||||||| ||||
Sbjct 2689 AATCGTTGGAGAGCTACGTTGTATGTAAATAGATGCAGCTTTTACAAACATATAAGTGGC 2748
Query 2714 TTGAAGGCCATATAATATCCCAAACTCAGATATCCAGTATATTCTTCTTCTTTGTTATAT 2773
|||||| |||||||||||| |||||||||| ||||| | ||||||||||||||||||| |
Sbjct 2749 TTGAAGACCATATAATATCTCAAACTCAGAGATCCACTTTATTCTTCTTCTTTGTTATTT 2808
Query 2774 ATTACATTTTCTTATTTTACTTGTTCTTTAAGAATCCTT 2812
|||||||||||||| |||||| |||||||||||||||||
Sbjct 2809 ATTACATTTTCTTAGTTTACTGGTTCTTTAAGAATCCTT 2847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139714936255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5