BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478085

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07580.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   606    7e-173


> AT3G07580.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant 
structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G48335.1). 
| chr3:2420961-2422825 REVERSE LENGTH=757
Length=757

 Score =  606 bits (328),  Expect = 7e-173
 Identities = 399/433 (92%), Gaps = 6/433 (1%)
 Strand=Plus/Plus

Query  120  TCAAAGGAAGCCTCCTGGGAATCGTCGGAAGTCGGGAGATCGAACAAGTAGCCAACAGAA  179
            ||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  154  TCACAGGAAGGCTTCTGGGAATCGCCGGAAGTCGGGAGATCGAACAAGTAGCCAACAGAA  213

Query  180  CAACGATCCTGAGAGAAATCAACCTCCTGTTACTAGTCTTCAGATGGAAAACAAACCCCA  239
            |||||||  |||||||||||| ||||||| |||| |||||||||||||||||| | ||||
Sbjct  214  CAACGATAATGAGAGAAATCAGCCTCCTGCTACTGGTCTTCAGATGGAAAACATATCCCA  273

Query  240  GACCCAGAGGATAATAACAGTAAAGGATTGCTCTAGGAGTGAAGCTTATCAGCTCATGAG  299
            ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||
Sbjct  274  GACCCAGAGGATAATAACAATAAAGGACTGCTCCAGGAGTGCAGCTTATCAGCTCATGAG  333

Query  300  CCAACGATGGGCAGCTGCAATGCATCAATACAACGACCCTACTGTGGATCTATCTGAGCG  359
            ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||
Sbjct  334  CCAACGATGGGCAGCTGAAATGCATCAATACGACGACCCAACTGTGGATCTATCTGTGCG  393

Query  360  ACCAATTATGTTCTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGATCCTGGCTGC  419
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  394  ACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGATCCTGGCTGC  453

Query  420  AGCAAACAAGACATTGCCTCCTCCATCGATATCGCCAACGGATTACATGACTGAAGTGCG  479
            ||||||||||||||| ||||||||||||    | | ||||||||||||||||||||||||
Sbjct  454  AGCAAACAAGACATTACCTCCTCCATCG----C-C-AACGGATTACATGACTGAAGTGCG  507

Query  480  CCGAGGATTGCTGATGCCAAAATTCAACAACTGAATGGTTTTTGTCCAGATGATGGAGCC  539
             |||||||||||||||||||||  |||||| ||||||||| |||| ||||||||||||||
Sbjct  508  GCGAGGATTGCTGATGCCAAAAGCCAACAATTGAATGGTTCTTGTTCAGATGATGGAGCC  567

Query  540  CATATAGACTAGT  552
            |||||||||||||
Sbjct  568  CATATAGACTAGT  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34762029724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5