BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478087
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07600.1 | Symbols: | Heavy metal transport/detoxification ... 442 2e-123
> AT3G07600.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:2424117-2425022 REVERSE LENGTH=725
Length=725
Score = 442 bits (239), Expect = 2e-123
Identities = 277/295 (94%), Gaps = 3/295 (1%)
Strand=Plus/Plus
Query 1 AGCAAAAGATCCTGCTAAGAGTTGCTATGACTGATGACACAACTAGAGCAAAAGCAATGA 60
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 73 AGCAAAAGATCCTGATAAGAATTGCTATGACTGATGACACAACTCGAGCAAAGGCAATGA 132
Query 61 AAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAAGGGAGATCACAGGAACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AAACTGCGGTTCAGTTTAAAGGCGTGAACGCTGTGGAAATAAAGGGAGATCACAGGAACC 192
Query 121 AGATTGAGGTGACCGGTGTTGAAGTTGATATGATCGCTCTAATCAACGCACTCAGGAAAA 180
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 193 AGATTGAGGTGACCGGTGTTGAAGTCGATATGATTGCTCTAATCAACACACTCAGGAAAA 252
Query 181 AAGTTGCATTTGCAGAGCTTGTTAGCGTAACTAAAGTTGAACCACCCAAGGATGGTGACa 240
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 253 AAGTTGCATTTGCGGAGCTTGTTAGCGTAGCTAAAGTTGAACCACCTAAGGATGGTGACA 312
Query 241 aagagcc-g--gaagaaaagaaacccgaagagaaaaaacctgaggagaaaaaaCC 292
|| |||| | ||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 313 AAAAGCCAGAAGAAGAAAAGAAACCCGAAGAGAAGAAACCCGAAGAGAAGAAACC 367
Score = 420 bits (227), Expect = 9e-117
Identities = 291/321 (91%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 286 aaaaaCCCGAGCCATGTTGTCAACCATGG---C---ATGGATATGGTGTGCCATCTTCCT 339
||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 406 AAAAACCTGAGCCATGTTATCAACCATGGCCTCATGATGGATATGGTGTGCCATCTTCCT 465
Query 340 ATCCCTATCCGTGTGATCCCTACCATCAGATCGGGGAACCTGTCTACAACCAAGATCCCA 399
||||||| ||||||||||||||| |||||||||||||||| || ||||| ||||||||||
Sbjct 466 ATCCCTACCCGTGTGATCCCTACAATCAGATCGGGGAACCCGTTTACAATCAAGATCCCA 525
Query 400 ATTGCAGAATCATGTGAGATAGGTTTCAAGTGGAAGACTAACGGAGGAGATAGCA-TTTT 458
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 526 ATTGCAGGATCATGTGAGATAGGTTTCATGTGGAAGATTAACGGAGGAGATAGCAGTTTT 585
Query 459 TCTATACTAAGATTGTCAACAAGTTAATGCACTTTGATAGTCAGATTTTTTACATGAATA 518
||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||
Sbjct 586 TCTATACTAAGATTGTCAACATGTTAATGCAATTTGATAGTCAGATTTGTTAAATGAATA 645
Query 519 AAAAAGCCTTGAGCTCTCAAAACCACACAAATTCTCTACTTGTAGATGCGATTATAACAT 578
|||| | |||||||| ||| | |||||||||||||||||||||||||| |||||||||
Sbjct 646 AAAA-GTCTTGAGCTATCAGTATCACACAAATTCTCTACTTGTAGATGCTCTTATAACAT 704
Query 579 GTAAAGCTAAATCTTGTTATC 599
||||||| |||||||||||||
Sbjct 705 GTAAAGCCAAATCTTGTTATC 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28834400378
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5