BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478089
Length=3048
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmj... 2891 0.0
> AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmjC)
domain-containing protein | chr3:2426069-2432913 FORWARD
LENGTH=3266
Length=3266
Score = 2891 bits (1565), Expect = 0.0
Identities = 1893/2045 (93%), Gaps = 47/2045 (2%)
Strand=Plus/Plus
Query 16 GAGAACGGACGCGGTGGTCTCCGTAGGCAGCGGAGGGTTTCTACGAAGCTGGCGAATTAC 75
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 122 GAGAACGGACGCGGTGGTCTCCGTAGGCATCGGAGGGTTTCTACGAAGCTGGCGAATTAC 181
Query 76 GTAGATCCTCCGACCGACGACGAAGAAGATGGAGGACCCAACAAGCGAAAGGGCAAAAGG 135
|||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 182 GTAGATCCTCCGACTGACGACGAAGAAGATGGAGGA-CC--CAAGCGAAAGGGCAAAAGG 238
Query 136 GGTGTATAT-GGGCCTCGGAAAAAGACAGCGAAGGAAGACGAGGAGAAGCAAAAGAACGA 194
|||| | || ||| ||| |||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 239 GGTGGAAATAGGG-CTCCGAAAAAGACACCGAAGAAAGACGAGGAGATGCAAAAGAACGA 297
Query 195 AATTGATGAAGCAAACGGAGTCACTGGTCTGGTCAAGGAAAAGAGAGCCGCTACTAAGAT 254
|||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 298 AATTGATGAAGCAAACCGAGTCACTGGTCTGGTGAAGGAAAAAAGAGCCGCGACTAAGAT 357
Query 255 TGTGAAAGGCAAAGA--CC-TCATT--ACT----GAAGCTTCTGGAAGCAAGCCCATGGT 305
| |||| ||||||| || | ||| | | |||||||||||||||| ||||| ||
Sbjct 358 TCTGAATCGCAAAGACTCCATTATTGAAGTAGGAGAAGCTTCTGGAAGCATGCCCAAGGA 417
Query 306 AGCAAAGGGAAAAAGGACT---AAGAAGG-A-GAATGAAATCGATGGTGAGATTCCAACT 360
|| |||||||| |||| | || |||| | | | ||||||||||||||||||||||||
Sbjct 418 AGTAAAGGGAATTAGGATTGGGAA-AAGGAAGGGA-GAAATCGATGGTGAGATTCCAACT 475
Query 361 AAGCCGGGCAAGAAGCCCAAGACTACAGTAGACGAGAGAATCATTGGTTACAGACCGGAC 420
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 AAGCCGGGCAAGAAGCCAAAGACTACAGTAGACCCGAGAATCATTGGTTACAGACCGGAC 535
Query 421 AATATGTGCCACCAATGTCAAAAGAGCGATAGGATTGTTGAACGGTGTCAGACCTGCAAG 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AATATGTGCCATCAATGTCAAAAGAGCGATAGGATTGTTGAACGGTGTCAGACCTGCAAT 595
Query 481 AGCAAGCGTTATTGTCACCCTTGCTTAGACACTTGGTATCCACTTATAGCAAAAGAAGAT 540
|| |||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||
Sbjct 596 AGTAAGCGTTATTGTCATCCATGCTTGGACACTTGGTACCCCCTTATAGCAAAAGAAGAT 655
Query 541 GTTGCCAAGAAATGCATGTTCTGCTCTAGTATTTGCAATTGCAGAGCATGCTTGCGTCTA 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 GTTGCCAAGAAATGCATGTTCTGCTCTAGTACTTGCAATTGCAGAGCATGCTTGCGTCTA 715
Query 601 GATACTAAATTGAAAGGGATAAATTCGAAGCTCATCCTCAATGAGGAAGAAAAGGTTCAA 660
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||
Sbjct 716 GATACTAAATTGAAAGGGATAAATTCGAACCTCATAGTCAGCGAGGAAGAAAAGGTCCAA 775
Query 661 TCCTCTAAGTTTATTTTGCGGAGTCTTCTCCCACATCTAAAAGGAATAAATGATGAACAA 720
|||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 776 GCCTCTAAGTTTATTCTGCAGAGCCTTCTCCCACATCTGAAAGGAATAAATGATGAACAA 835
Query 721 GTCGCAGAGAAGGAAGTTGAGGCCAAAATATCCGGACTGAAGTTTGAAGAGGTTAGGCCC 780
|| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 836 GTTGCTGAGAAGGAAGTTGAGGCCAAAATATACGGACTGAAGTTTGAAGAGGTGAGGCCC 895
Query 781 CAAGACGCTGAAGCTTTCCCCGATGAAAGACTATACTGTGATATCTGCAAGACTTCTATC 840
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 896 CAAGACGCTAAAGCTTTCCCTGATGAAAGACTATACTGTGATATCTGCAAGACTTCTATC 955
Query 841 TATGATCTCCATAGGAATTGCAAGGCATGTAATTGTGATATCTGCCTTAGCTGTTGCCTT 900
|||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||
Sbjct 956 TATGATCTCCATAGGAATTGCAAGTCCTGTAGTTTTGATATCTGCCTTAGCTGTTGCCTT 1015
Query 901 GAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGTGTCTTGGAATTATATTAAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGTGTCTTGGAATTATATTAAC 1075
Query 961 CGAGGTTTAGAGTATGAACATGGAGAAGAAGGAGAAGTTATTGAAAAGGCGGAGAATACG 1020
|||||||||||||||||||||||| |||||||| |||| ||||||||| ||| ||||| |
Sbjct 1076 CGAGGTTTAGAGTATGAACATGGACAAGAAGGAAAAGTGATTGAAAAGCCGGCGAATAAG 1135
Query 1021 CTAGATGATAAGCTGAAAGATAAGCCGAAAGATAAGCCGGATGATAAGCTGGATGATAAG 1080
|||||||||||| | | ||||||||||| ||||| ||||| ||||||||||
Sbjct 1136 CTAGATGATAAG-T------T-----GAAAGATAAGCTGGATGGTAAGCCGGATGATAAG 1183
Query 1081 CCGAAGGGTAAGCCAAAGGTTAAACCGAAGGGTAGGCCGGATGATAAGCCGAAGGGTAAG 1140
||||||||||||||||||| || || ||||||| ||||||||||||||| |
Sbjct 1184 CCGAAGGGTAAGCCAAAGGGTAGGCCAAAGGGTAAGCCGGATGATAAGCC---------G 1234
Query 1141 CCAAAGGGTAAACTGAAGGGTAAGCAGGATGATAAACCGGATGTTAAGCC-GAAGGGTAA 1199
|||||||||||||||||||||||||||||||||||||||| |||||| || | | ||
Sbjct 1235 ---AAGGGTAAACTGAAGGGTAAGCAGGATGATAAACCGGATGATAAGCCAGATGAG-AA 1290
Query 1200 GCCGATTAATACAGACCATATGAAGTACCCTTCTATGTGGAAAGCAAATGAAGCTGGGAT 1259
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1291 GCCGGTTAATACAGACCATATGAAGTACCCTTCTCTGTGGAAAGCAAATGAAGCTGGGAT 1350
Query 1260 CATTACTTGTTATTGTGGTGCTGGGGAGTTAGCGTTGAAACGACTACTTCCGGATGGTTG 1319
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1351 CATTACTTGTTGTTGTGGTGCTGGGGAGTTAGTGCTGAAACGACTACTTCCGGATGGTTG 1410
Query 1320 GATATCTGAGTTGGTCAACAGAGTAGAAAAAACTGCTGAAGCTAGTGAGCTTTTGAATTT 1379
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 1411 GATATCTGAGTTGGTCAACAGAGTTGAAAAAACTGCTGAAGCTGGCGAGCTTTTGAATTT 1470
Query 1380 ACCTGAAACGGTTTTGGAGCAATGCCCTTGTTCTAACTCTGACAGTCATATTGACATAGA 1439
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1471 ACCTGAAACGGTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACATATTGACATAGA 1530
Query 1440 CAGCTCTAATTTGTTGAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTATACTC 1499
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1531 CAGCTGTAATTTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTTTACTC 1590
Query 1500 TCCAAGTGTATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TCCAAGTGTATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAA 1650
Query 1560 AGGCGAGCCTGTGATTGTGAGAAATGTGCTTGAAGCAACATCTGGTTTAAGCTGGGAACC 1619
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1651 AGGCGAGCCTGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTAAGCTGGGAACC 1710
Query 1620 AATGGTAATGTTTCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGAAACACTTACGGA 1679
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 1711 AATGGTAATGCATCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGGATCACTTAAGGA 1770
Query 1680 TGTTGAAGCTGTTGATTGTTTGGACTTCTGTGAGGTAAAAGTTACTCTTCATGAATTTTT 1739
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1771 TGTTGTTGCTGTTGATTGTTTGGACTTCTGTGAGGTAAAAGTTAATCTTCATGAATTTTT 1830
Query 1740 TACTGGATACACGGATGGCCGATATGATCGTATGGGTTGGCCTCTAGTTCTGAAACTGAA 1799
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1831 TACTGGATACACGGATGGCCGATATGATCGAATGGGTTGGCCACTAGTTCTGAAACTGAA 1890
Query 1800 AGATTGGCCTCCAGCTAAAGTCTTCAAAGATAGCTTGCCACGTCATGCTGAGGAGTTCTT 1859
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1891 AGATTGGCCTCCAGCTAAAGTCTTCAAAGATAACTTGCCACGTCATGCTGAGGAGTTCTT 1950
Query 1860 ATGTAGTTTGCCTTTGAAGCATTACACTCACCCGGTTAATGGACCTTTGAATCTTGCTGT 1919
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1951 ATGTAGTTTGCCTTTGAAGCATTACACTCATCCGGTTAATGGACCTTTGAATCTCGCTGT 2010
Query 1920 CAAGCTTCCCCAAAACTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGG 1979
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 CAAGCTTCCCCAAAATTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGG 2070
Query 1980 ATTTGCTCAAGAATTTGGCCGTGGAGATTCTGTTACTAAGCTCCATTGCGACATGTCTGA 2039
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2071 ATTTGCTCAAGAATTAGGCCGTGGAGATTCTGTTACTAAGCTCCACTGCGACATGTCTGA 2130
Query 2040 TGCGG 2044
|||||
Sbjct 2131 TGCGG 2135
Score = 1417 bits (767), Expect = 0.0
Identities = 907/972 (93%), Gaps = 19/972 (2%)
Strand=Plus/Plus
Query 2084 CCAAGATGCAAGATGGAATGGGGAAA-CTGAAAAAGAAGCATGCCGAACAAGATCTCAAG 2142
|||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2232 CCAATATGCAACCTGGAAT-TGGAAATCTGAAAAAGAAGCATGCCGAACAAGATCTCAAG 2290
Query 2143 GAGCTGTATAGCTCAGTAGCTAACCAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGA 2202
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2291 GAGCTGTATAGCTCAGTAGCTAACAAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGA 2350
Query 2203 CAACAAGTCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAA 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351 CAACAAGTCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAA 2410
Query 2263 GATATTCCTAAATTAGAAAGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTAC 2322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2411 GATATTCCTAAATTAGAAAGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTAC 2470
Query 2323 TGCTGTCCTGTGTCTCAGATTGCTCATCCTATACATGACCAGAATTTCTATCTGACGCGG 2382
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 2471 TGCTGTCCTGTGTCTCAGGTTGTTCATCCTATACATGACCAGAACTTCTATCTGACGCGG 2530
Query 2383 TATCATATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAG 2442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2531 TATCATATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAG 2590
Query 2443 CTTGGGGATGCTGTTTTAATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCC 2502
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CTTGGTGATGCTGTTTTGATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCC 2650
Query 2503 TGCACA-AAGGTAGCT-TGTGACTTTGTCTCACCTGAAAATGTCAGCGAGTGTTTACACT 2560
|||| | |||||||| | |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2651 TGCA-ATAAGGTAGCGCT-TGACTTCGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCT 2708
Query 2561 TGACAAAACAGTATCGTCTACTTCCACCAAATCATTTTGCTAAAGAAGACAAGTTAGCGG 2620
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2709 TGACAAAACAGTATCGTCTACTTCCACCAAATCATTTTGCAAAAGAAGACAAGTTAGGGG 2768
Query 2621 TTAAGAAGATGATAATCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGT 2680
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2769 TTAAGAAGATGATAGTCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGT 2828
Query 2681 CTCCAGAACCCAAAGAGAAGAAG-AGAAGTACGA-ATT-C--AAGGAAGACAACAGCCA- 2734
|||||||||| |||||||||| | || || || | | ||| ||| ||||||
Sbjct 2829 CTCCAGAACCTGAAGAGAAGAAACAAAA-TATGAGAGGGCCGAAG-AAGGGGGCAGCCAA 2886
Query 2735 GGACAGTTGTTAAGGCTCTCAAAGACTTACCTCCAAGTGAAAAGAAGTCTTCGGAAGCAG 2794
|| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2887 GG-CAGTTGCCAAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAG 2945
Query 2795 CTGAAGAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGCTCCCAAAGACTTCC 2854
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 2946 CTGAAGAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTCAAAGACTTAC 3005
Query 2855 CTCCAAGTGAACAGAAGTATTCCGAAGCCGAAGAGGAGATATCAAATGGGATAGTCAATG 2914
||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 3006 CTCCAAGTGAAGAGAAGTCTTCCGAAGCCAAAGTGGAGATATCAAATGGGATAGTCAGTG 3065
Query 2915 CAATGGATAAGGCTCTCGAAAACATATCTTCAAGCGAAAAGAAGTGT-CTGGAAGAGGAA 2973
|||||||||||| ||||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 3066 CAATGGATAAGGATCTCGAACACATATCTTCAAGCGAAAAGAAGTCTAC-GGAAGAGGAA 3124
Query 2974 GGGGTGAAAAGACCAAAGATTGTGAGGACATATGAGCGCAGAAAAAAGCAGAGAAGTGA- 3032
||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||
Sbjct 3125 GGGGTGAAAAGACCAAATATTGTGAGGACATATGAGCGGAGAAAAAAGCTGGGAAGTGAA 3184
Query 3033 GAAGACCAACGC 3044
| | ||||||||
Sbjct 3185 GTA-ACCAACGC 3195
Score = 132 bits (71), Expect = 2e-29
Identities = 110/128 (86%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 2836 AAGGCTCCCAAAGACTTCCCTCCAAGTGAACAGAAGTATTCCGAAGC--C-GAAGAGGAG 2892
||||||| ||||||||| ||||||||||| |||||| ||| ||||| | |||||||||
Sbjct 2897 AAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAGCTGAAGAGGAG 2956
Query 2893 ATATCAAATGGGATAGTCAATGCAATGGATAAGGCTCTCGAAA-ACATATCTTCAAGCGA 2951
|||||||||||||||||||||||||| ||||||| |||| ||| || || || |||| ||
Sbjct 2957 ATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTC-AAAGACTTACCTCCAAGTGA 3015
Query 2952 AAAGAAGT 2959
| ||||||
Sbjct 3016 AGAGAAGT 3023
Score = 102 bits (55), Expect = 2e-20
Identities = 79/91 (87%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1111 GGTAGGCCGGATGATAAGCCGAAGGGTAAGCCAAAGGGTAAACTGAAGGGTAAGCAGGAT 1170
|||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 1166 GGTAAGCCGGATGATAAGCCGAAGGGTAAGCCAAAGGGTAGGCCAAAGGGTAAGCCGGAT 1225
Query 1171 GATAAACCGGATGTTAAGCCGAAGGGTAAGC 1201
||||| ||| | | ||| | |||||||||||
Sbjct 1226 GATAAGCCGAAGGGTAAACTGAAGGGTAAGC 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151554334803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5