BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478100
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07680.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1500 0.0
> AT3G07680.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr3:2455290-2456879 FORWARD LENGTH=1033
Length=1033
Score = 1500 bits (812), Expect = 0.0
Identities = 932/989 (94%), Gaps = 12/989 (1%)
Strand=Plus/Plus
Query 24 GGCTTCTTCGTGTCCGATTCTGAACGAGCTCGCTCTTTCTCATCTAATTCTCTCCACCGT 83
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 18 GGCTTCTTCGTGTCCGATTCTGAACGAGCTCGCTCTTTCTCATCCAATTCTCTCCACCGT 77
Query 84 CATCTTCTCCGATCAATCTCCGAATTTTCTTAACACTCATCGACCAGATCGAGTTTCCAT 143
| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 78 CTTCTACTCCGATCAATCTTCAAATTTTCTTAACACTCATCGACCAGATCGAGTTTCCAT 137
Query 144 CGATCTAATCTATCATTC-TCTGATTTTAAATTATTGTGGCAGATGAGCTTGAAGGCTAC 202
|||||||||| |||| || || ||||| | || | | ||||||||||||||| |||
Sbjct 138 CGATCTAATCAATCAATCATCAGATTTGATCTT-CTCAAGAAGATGAGCTTGAAGGGTAC 196
Query 203 GATCGTATTGTTAGGGCTCTTATGGAGCTTCCAGGCTACGTTAGGGATTAGATTCGTAAT 262
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 197 GATCGTATTACTAGGGCTCTTATGGAGCTTCCAGGCTACGTTAGGGATTAGATTCGTGAT 256
Query 263 AGACCGAGAAGAATGTTTCTCCCACAAGGCTGAATATGAAGGCGATACGCTTCATGTCTC 322
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 257 AGACCGTGAAGAATGTTTCTCCCACAAGGCTGAATATGAAGGTGATACGCTTCATGTCTC 316
Query 323 TTTCGTCGTCATCAAGTCTGACTCTCAATGGCACTTTAACGAGGATGGTGTAGATCTTGT 382
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 317 TTTCGTCGTCATCAAGTCTGACTCTCAATGGCATTTTAACGAGGATGGTGTAGATCTTGT 376
Query 383 GATACATGGCCCAACAGGCGAACAAATTCATGACTTCAGGGAACAGATAAGCGCAAAGCA 442
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 377 GATACATGGCCCAACAGGCGAACAAATTCATGACTTCAGGGAGCAGATAAGCGCAAAGCA 436
Query 443 TGATTTTGTTGTCCAAAAGAAAGGGGTTTACCGATTCTGTTTCACAAACAAGTCTCCTTA 502
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 437 TGATTTTGTTGTCCAAAAAAAAGGGGTTTACAGATTCTGTTTCACAAACAAGTCTCCTTA 496
Query 503 TCACGAAACCATCGACTTCGATGTACAGCTTGGTCACTTTGCATATTACGATCAACATGC 562
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 497 TCATGAAACCATTGACTTCGATGTACAGCTTGGTCACTTTGCATACTACGATCAACACGC 556
Query 563 AAAGGACGAGCATTTCACTCCCTTGATGGAGCAAATATCAAAGTTAGAGGAGGCTCTTTA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AAAGGACGAGCATTTCACTCCCTTGATGGAGCAAATATCAAAGTTAGAGGAGGCTCTTTA 616
Query 623 CAACATCCAATTTGAACAACATTGGTTAGAGGCTCAGACTGATCGTCAAGCCATCGTGAA 682
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 617 CAACATCCAATTTGAACAACATTGGTTAGAAGCTCAGACCGATCGTCAAGCTATCGTGAA 676
Query 683 CGAGAACATGAGCAAAAGAGCAGTACACAAAGCTTTGTTCGAGTCGTTTGCACTGATTGG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CGAGAACATGAGCAAAAGAGCAGTACACAAAGCTTTGTTCGAGTCGTTTGCACTGATTGG 736
Query 743 GGCAAGTCTTCTCCAAGTGTATCTTCTGCGTCGCTTGTTTGAACGCAAACTCGGCATGTC 802
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GGCAAGTTTTCTCCAAGTTTATCTTCTGCGTCGCTTGTTTGAACGCAAACTCGGCATGTC 796
Query 803 TCGTGTCTAAAAGTATTGAGTTTTATTATGACTTTGAAACTTATTTTGCCTTAAAATGTA 862
|||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 797 TCGTGTCTAAAAGTATCGAGTTT-ATTATGACTTTGAA-CTTATTTTGCCTTAAAATGTA 854
Query 863 CCAGGGAAAGGAATATTTACTTAAAATCTTTTTACAGACAGATCGTAGTTCATTGGAAGA 922
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 855 CCAGGGAA-----TCTTTACTTAAAACCTTTTTACAGACAGATCGTAGTTCATTGGAAGA 909
Query 923 TTTGCTTTCTCCCATGTTCAAGAAATTATCCACTCGTGATTATAAtt-ttttttct-t-t 979
|||||||||||||||||||||||| | |||| |||||||| |||||| |||||| | | |
Sbjct 910 TTTGCTTTCTCCCATGTTCAAGAACTAATCCTCTCGTGATGATAATTCTTTTTTTTCTCT 969
Query 980 ttATTAACAAACAACTTTTCCATAAGCTA 1008
||||||||| |||||||||||| ||||||
Sbjct 970 TTATTAACAGACAACTTTTCCACAAGCTA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5