BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478103
Length=2482
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07700.3 | Symbols: | Protein kinase superfamily protein | ... 2798 0.0
> AT3G07700.3 | Symbols: | Protein kinase superfamily protein
| chr3:2459497-2463965 REVERSE LENGTH=2677
Length=2677
Score = 2798 bits (1515), Expect = 0.0
Identities = 1663/1733 (96%), Gaps = 15/1733 (1%)
Strand=Plus/Plus
Query 1 AAGGACGACACCATTACGCAACTTAGTCCTCTT---TCTCTCTCTGTGGACTCTGTTCCA 57
||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 128 AAGGACGACACCATTACGCAACTTAGTCCTCTTACCTCTCTCTCTCTCGACTCTGTTCCA 187
Query 58 AGAAAATCATCTACTTAATAATAGCTGATTTTACAGATTCCTGCAACGAAATTTCTGGGT 117
||||| || |||||||||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 188 AGAAATTCCTCTACTTAAT-ACAGCTGATTCTACAGATTCCTGCTACGAAATTTCTGGGT 246
Query 118 CTGGGTTGATCTCTGTCTCACCAGTCAACCCAATTCAGGACTCTAATAAAGGTGGAAATG 177
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 247 CTGGGTTGATCTTTGTCTCACCAGTCAACCCAATTCAGGACTTTGATAAAGGTGGAAATG 306
Query 178 GCGGCGTTATTAGCTTCTCAGAGCTGCTGCTATGGTGGTGAGACCGCAAGAATCACCAAA 237
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 307 GCGGCTTTATTAGCTTCTCAGAGCTGCTGCTATGGCGGTGAGACCGCAAGAGTCACCAAA 366
Query 238 GCTATTGGTTTCAGTGGCTCTGTAGAGAACCCTTTCACTGGGGAAGCTACTCAGTGTTAT 297
||||||||||||||| ||||| | ||||| | ||||||||||||||| ||||||||||||
Sbjct 367 GCTATTGGTTTCAGTAGCTCTTTGGAGAATCATTTCACTGGGGAAGCCACTCAGTGTTAT 426
Query 298 GGCAGCAAGTCCAAGAGATTTCGTATTGAGATGAGACAGTCGGAACCCCCCTCAAAGGTT 357
||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 427 GGCAGCAAGTCTAAGAGATTTCGTATTGAGATGAGACAGTCGGAATTGCCCTCTAAGGTT 486
Query 358 GGAATCAATGGACGTTCAGTCAAAATGGTTCCTGCGACTGAGGTGGTGAAAAGGAAAGAT 417
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 487 GGAATCAATGGACGTTCAGTCAAAATGGTTCCTGCGAGTGAGGTGGTGAAGAGGAAAGAT 546
Query 418 GGTGTGAATAATGTAAATGGATCAGC-GGTGAAAGGTGTTAATGGAGCGAGTTTGGTTAG 476
| ||| || |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 547 -G-GTG-----TG--AATGGATCGGCTGG-GAAAGGTGTTAATGGAGCGAGTTTGGTTAG 596
Query 477 TAGTAGAAACATTAATGGTGCGCCGTCAACTTTGGTTAAGGCACCAAAGAAAACAACAGG 536
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 TAGTAGAAACATTAATGGTGCGGCGTCAACTTTGGTTAAGGCACCAAAGAAAACAACAGA 656
Query 537 ATCTTACCTTCCTCCACCGGTTGAAGGAGTTAGGGTTCTTCCTTCTGATGAAGGATTTAG 596
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 ATCGTACCTTCCTCCACCGGTTGAAGGAGTTAGGGTTCTTCCTTCTGATGAAGGTTTTAG 716
Query 597 CTGGGCTGATGAGAATTACAGCTCACTTCAACGGAGTATTGATGTTTGGTCGTTTGTTAT 656
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 717 CTGGGCTGATGAGAATTATAGCTCACTTCAACGCAGTATTGATGTTTGGTCATTTGTTAT 776
Query 657 TTCCCTGAGGATTCGTGTCTTGTTCGACAATGCAAAATGGGCTTATGTTGGAGGATTCAC 716
|||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 777 TTCCCTGAGGATTCGTATCTTGTTCGATAATTCGAAATGGGCTTATGTTGGAGGATTCAC 836
Query 717 AGAAGAAAAACAGAAAAGCCGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATT 776
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGAAGAAAAACAGAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATT 896
Query 777 GCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCGGACTTGTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 GCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAGACTTGTT 956
Query 837 TCCACGCGAATTCGTGGATGAGCTTTCCAAATTGCAGGACAGAGTCCCGGCTTTTTCTCC 896
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 957 TCCGCGCGAATTCGTGGATGAGCTTTCCAAGTTGCAGGACAGAGTCCCCGCTTTTTCTCC 1016
Query 897 AGAGAAAGCAAAGCGCTTCATTGAGGCTGAACTTGGGGCTCCTATTAGTGTAATGTTTAA 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 AGAGAAAGCAAAGCGCTTCATTGAGGCTGAACTTGGGGCTCCTATTAGTGTAATGTATAA 1076
Query 957 AGAATTTGAAGAGCAACCCATAGCTGCAGCTAGCCTTGGTCAGGTACACAGAGCTGTGTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 AGAATTTGAAGAGCAACCCATAGCTGCAGCTAGCCTTGGTCAGGTACACAGAGCTGTTTT 1136
Query 1017 GCACAATGGCGAGAAAGTGGTAGTAAAAGTACAAAGACCCGGACTAAAGAAACTTTTCGA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCACAATGGCGAGAAAGTGGTAGTAAAAGTACAAAGACCCGGACTAAAGAAACTTTTCGA 1196
Query 1077 TATCGATTTACGAAATCTGAAGCTGATTGCCGAGTATTTCCAGAAAAGTGAATCATTTGG 1136
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TATTGATCTACGAAATCTGAAGCTGATTGCCGAGTATTTCCAGAAAAGTGAATCATTTGG 1256
Query 1137 TACAAACGATTGGGTTGGTATTTATGAAGAATGTGCCTCAATTTTGTATAAAGAGATTGA 1196
||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1257 TACAAACGATTGGGTTGGTATCTATGAAGAATGTGCCTTAATTTTGTATCAAGAGATTGA 1316
Query 1197 CTACATAAACGAAGCTAAGAACGCTGACAGATTCCGGAGAGACTTCCGGAATATAAACTG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CTACATAAACGAAGCTAAGAACGCTGACAGATTCCGGAGAGACTTCCGGAATATAAACTG 1376
Query 1257 GGTCCGCGTACCTTTGGTTTATTGGGATTACTCTGCCATGAAGGTCTTGACTTTGGAGTA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGTCCGCGTACCTTTGGTTTATTGGGATTACTCTGCCATGAAGGTCTTGACTTTGGAGTA 1436
Query 1317 TGTACCAGGTGTTAAGATCAACAACTTGGACGCCTTAGCTGCACGGGGTTTTAACCGTTC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGTACCAGGTGTTAAGATCAACAACTTGGACGCCTTAGCTGCACGGGGTTTTAACCGTTC 1496
Query 1377 TAGAATCGCATCACGGGCCATTGAAGCTTATCTTATCCAGATACTCAAAACCGGCTTCTT 1436
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1497 TAGAATCGCATCACGGGCCATTGAAGCTTATCTTATACAGATACTCAAAACCGGCTTCTT 1556
Query 1437 TCATGCGGATCCGCACCCAGGAAACCTTGCAATTGATGTAGATGAATCGATCATCTACTA 1496
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1557 TCATGCGGATCCGCACCCAGGAAACCTTGCAATTGATGTAGATGAATCAATCATCTACTA 1616
Query 1497 TGACTTTGGCATGATGGGAGAGATCAAAACATTTACTCGGAAGAGATTGCTTGATCTCTT 1556
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1617 TGACTTCGGCATGATGGGAGAGATCAAAACATTTACTCGGAAGAGATTACTTGATCTCTT 1676
Query 1557 CTATTCTGTTTATGAAAAAGATGCAAAAAAGGTCATGCAAAACCTTATAGACCTTGAAGC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CTATTCTGTTTATGAAAAAGATGCAAAAAAGGTCATGCAAAACCTTATAGACCTTGAAGC 1736
Query 1617 ACTTCAACCCACTGGAGATCTTTCTTCGGTAAGGAGATCTGTTCAGTTTTTCTTGGACAA 1676
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1737 ACTTCAACCCACTGGAGATCTTTCATCGGTAAGGAGATCTGTTCAGTTTTTCTTGGACAA 1796
Query 1677 CCTATTAAGCCAATCACCAGATCAGCAACAGACTTTGGCAGCTATTGGAGAGG 1729
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 CCTATTAAGCCAATCACCAGATCAGCAACAGACTTTGGCAGCTATTGGAGAGG 1849
Score = 1088 bits (589), Expect = 0.0
Identities = 709/762 (93%), Gaps = 27/762 (4%)
Strand=Plus/Plus
Query 1727 AGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCGTCAACTTTCACCTTTG 1786
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1934 AGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCATCAACTTTCACCTTTG 1993
Query 1787 TCATCAGAGCATTTTCCACACTTGAGGGTATTGGTTACATCCTTGATCCAGATTTTTCCT 1846
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1994 TCATCCGAGCATTTTCCACACTTGAGGGTATTGGTTACATCCTTGATCCAGAATTTTCCT 2053
Query 1847 TTGTGAAGGTTGCTGCTCCTTATGCACAGGAACTCCTGGATTTAAAACAAAGGCAGCGCT 1906
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 2054 TTGTGAAGGTTGCGGCTCCTTATGCGCAGGAACTCCTGGATCTAAAACAAAGGCAACGCT 2113
Query 1907 CGGGTACTCAGCTTGTCCAAGAAATAAGGAAGCAGGCTGACGATGCCAGGTCTTCTACTC 1966
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2114 CGGGAACTCAGCTTGTCCAAGAAATAAGAAAGCAGGCTGATGATGCCAGGTCTTCTACTC 2173
Query 1967 TGTCGATGCCATATCGAGTGCAGCGAATAGAAGAGTTTGTGAAAGAACTCGATTCAGGCG 2026
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2174 TGTCTATGCCATATCGAGTGCAGCGAATAGAAGAGTTTGTGAAAGAACTCGATTCAGGCG 2233
Query 2027 ATCTAAAACTCCGTGTTCGGGTTCTTGAGTCGGAAAGAGCAGCCCGGAAAGCGACAATTC 2086
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2234 ATCTGAAACTCCGTGTTCGGGTTCTTGAGTCGGAAAGAGCAGCCCGGAAAGCGACAATAC 2293
Query 2087 TGCAGATGGCGACAATGTATACAGTTCTTGGAGGAACTCTACTTAATATTGGGGTTACAT 2146
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 TGCAGATGGCGACGATGTATACAGTTCTTGGAGGAACTCTACTTAATATTGGGGTTACAT 2353
Query 2147 TTAGCAACCAAGGAAGTCAGCTTGTTGCCAATGGATCCTTCATTGGAGCAGGGATATTCA 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354 TTAGCAACCAAGGAAGTCAGCTTGTTGCCAATGGATCCTTCATTGGAGCAGGGATATTCA 2413
Query 2207 TGGCATTGGTACTGAGGTCTATGCAAAGAGTAAATAAGCTTGATAAGTTTGAGAAGATGA 2266
|| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2414 TGTTATTGGTACTGAGGTCTATGCAAAGGGTAAATAAGCTTGATAAATTTGAGAAGATGA 2473
Query 2267 TATGATGATGACTGGTGG--------ATAGTTTATTCTTTTGAAGCTCCAAATATCAGAT 2318
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2474 TATGATGATGACTGGTGGTCTGGTGGATAGTTTATTCTTTTAAAGCTCCAAATATCAGAT 2533
Query 2319 ATAGAATTGTGATGTATAGCCGTATAGATATAGCATGTATCTTTTAGCTCCCAGATTCAT 2378
|||||||| || || || | ||||| |||||||||||||||| |||||||| | ||
Sbjct 2534 ATAGAATT-TG-TG-AT-G---TATAGGTATAGCATGTATCTTT-AGCTCCCATA--CAC 2583
Query 2379 AATATTTATAAATTGTATAAAAACACTGTTATTCTCAACAATAAAAGGAAGGTCAAAGAT 2438
|||||||||||||||||||||||| |||| | || || | || |||| |||||||||
Sbjct 2584 AATATTTATAAATTGTATAAAAAC--TGTT-T-CT-AAGGA-AA--GGAAAGTCAAAGAT 2635
Query 2439 ATA-TATGAGACTGAGTTTCACTAGAAAGTACACAACTTTTA 2479
||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2636 ATAATATGAGACTGAGTTTCACTATAAAGTACACAACTTTTA 2677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123159845065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5