BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478110
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07740.4 | Symbols: ADA2A | homolog of yeast ADA2 2A | chr3:... 2656 0.0
> AT3G07740.4 | Symbols: ADA2A | homolog of yeast ADA2 2A | chr3:2469831-2473095
REVERSE LENGTH=1884
Length=1884
Score = 2656 bits (1438), Expect = 0.0
Identities = 1733/1868 (93%), Gaps = 49/1868 (3%)
Strand=Plus/Plus
Query 1 AAGTGCGAGCTTGGTGCCGATGGGTCGTTCGAAATTAGCTTCTCGTCCTGCTGAGGAAGA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 15 AAGTGCGAGCTTGGTGCCGATGGGTCGTTCGAAACTAGCTTCTCGTCCTGCTGAGGAAGA 74
Query 61 CCTGAATCAAGGAAAATCGAAAAGGAAAAAGATATC-TTCGGGTCCTGAGAATGCAGGGG 119
|||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| | ||
Sbjct 75 CCTGAATCCAGGAAAATCAAAAAGGAAAAAGATATCATT-GGGTCCTGAGAATGCTGCGG 133
Query 120 CTTCAGTTTCCACCGGAAGTGAAGCTGGGAATGAGAGGAAAGCTGGCTTTTACTGTTGTA 179
| ||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 134 CATCAATTTCCACCGGAATTGAAGCTGGGAATGAGAGGAAACCTGGCCTTTACTGTTGTA 193
Query 180 ACTATTGCGACAAAGATCTGTCTGGTTTGGTTCGTTTTAAATGTGCTGTTTGTATGGACT 239
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 194 ACTATTGCGATAAAGATCTGTCTGGTTTGGTTCGTTTCAAATGTGCTGTTTGTATGGACT 253
Query 240 TTGATCTTTGTGTGGAATGCTTTTCTGTCGGCGTTGAACTTAATCGTCACAAGAACAGTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TTGATCTTTGTGTGGAATGCTTTTCTGTCGGCGTTGAACTTAATCGTCACAAGAACAGTC 313
Query 300 ACCCATATC--G----GGTTA---T----------G--GACAATTTGTCTTTTCCTCTTG 338
||||||||| | ||||| | | ||||||||||||||| | ||||
Sbjct 314 ACCCATATCGTGTTATGGTTAGTTTCCAACGCCGAGCAGACAATTTGTCTTTTTCGCTTG 373
Query 339 TTACTTCTGATTGGAACGCCGATGAAGAGATACTCCTTCTTGAGGCCATTGCCACATACG 398
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 374 TTACTTCTGATTGGAATGCCGATGAAGAGATACTCCTTCTTGAGGCCATTGCGACATACG 433
Query 399 GGTTTGGCAATTGGAAAGAAGTTGCAGACCATGTTGGCAGTAAGACAAATACAGAATGTA 458
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 434 GGTTTGGCAATTGGAAAGAAGTTGCAGACCATGTTGGTAGTAAGACAACGACAGAATGTA 493
Query 459 TTGATCACTTCAATTCTGCTTACATGCAGTCACCATGCTTTCCACTTCCGGACTTGTCCC 518
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TTAAACACTTCAATTCTGCTTACATGCAGTCACCATGCTTTCCACTTCCGGACTTGTCCC 553
Query 519 ATACAATTGGAAAGAGCAAAGAGGAGCTGCTTGCTATGAGTAAAGAGATTGCAGTCAAAA 578
|||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 554 ATACTATTGGAAAGAGCAAAGATGAGCTGCTTGCTATGAGTAAAGATAGTGCAGTCAAAA 613
Query 579 CAGAATTACCTGCACTTGTGAGGCTATCTCCAAAAGAAGAGTTGCCTATGTCAGCTGAAA 638
||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 614 CAGAAATACCTGCATTTGTGAGGCTATCTCCAAAAGAAGAGTTACCTGTGTCAGCTGAAA 673
Query 639 TCAAACACGAAGCTTCAGGGAAGGACAATGCAATAGATCCACCTTTGCCTGCCTTAGCTG 698
|||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 674 TCAAACACGAAGCTTCAGGGAAGGTCAATGAAATAGATCCACCTTTGTCTGCCTTAGCTG 733
Query 699 GAGTCAAGAAGAAAGTCAATGTACCGCAGGCTAAGG--A-CATCAAGTTGGAAGCTGCAA 755
||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 734 GAGTCAAGAAGAAAGGCAATGTACCGCAGGCTAAGGACATCATCAAGTTGGAAGCTGCAA 793
Query 756 AACAACAATCTGACAGGAGTGTCGGGGAGAAGAAACTTAGACTTCCTGGAGAGAAAGTTC 815
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 794 AACAACAATCTGACAGGAGTGTCGGGGAGAAGAAACTCAGACTTCCTGGAGAGAAAGTTC 853
Query 816 CATTAGTAACAGAGTTATATGGTTACAATCTAAAGAGGGAAGAATTTGAGATCGAACATG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CATTAGTAACAGAGTTATATGGTTACAATCTAAAGAGGGAAGAATTTGAGATCGAACATG 913
Query 876 ACAACGATGCTGAGCAACTGCTCGCAGACATGGAATTTAAGGATTCTGACACGGATGCTG 935
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 914 ACAACGATGCTGAGCAACTGCTTGCTGACATGGAATTTAAGGATTCTGACACAGATGCTG 973
Query 936 AGCGTGAGCAGAAGCTGCAGGTTCTTCATATTTACTCGAAAAGGCTAGATGAGAGGAAGC 995
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 974 AGCGTGAGCAGAAACTGCAGGTTCTTCGTATTTACTCGAAAAGGCTTGATGAGAGGAAGC 1033
Query 996 GGAGGAAGGAATTCGTTCTAGAAAGAAACTTGCTGTACCCTGATCAATATGAGATGAGCC 1055
||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1034 GGAGGAAGGAATTTGTTCTGGAAAGAAACTTGTTGTACCCTGATCAATATGAGATGAGCC 1093
Query 1056 TTTCCGCAGAGGAGAGAAAATTATATAAGAGTTGTAAAGTCTTTGCGCGGTTCCACTCCA 1115
|||| ||||||||||||||| ||||||| || |||||||| |||||||||||||| ||||
Sbjct 1094 TTTCAGCAGAGGAGAGAAAAATATATAAAAGCTGTAAAGTGTTTGCGCGGTTCCAATCCA 1153
Query 1116 AAGAAGAGCACAAGGAACTGATTAAGAAAGTTATTGAGGAGCACCAAATTCTCAGAAGAA 1175
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1154 AAGAAGAGCACAAGGAACTGATTAAGAAAGTCATTGAAGAGCACCAAATTCTCAGAAGAA 1213
Query 1176 TCCAGGATCTTCAGGAAGCTAGAAATGCTGGTTGTAGGACAACTTCAGAAGCAAATAGAT 1235
|| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1214 TCGAGGATCTTCAGGAAGCTAGAACTGCTGGTTGCAGGACAACTTCAGACGCAAATAGAT 1273
Query 1236 TTATagaagagaagagaaagaaggaagctgaagaaagTGTGCTGCTGCGACTTAACCACG 1295
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1274 TTATAGAAGAGAAGAGAAAGAAGGAAGCTGAAGAAAGTATGCTGCTGCGGCTTAACCACG 1333
Query 1296 GTGCACCAGGCAGTATAGCCGGTAAAACATTAAAAAGTCCAAGAGGGTTACCCAGAAATT 1355
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1334 GTGCACCAGGCAGTATAGCCGGTAAAACACTAAAAAGTCCAAGAGGGTTACCCAGAAATT 1393
Query 1356 TGCAGCCCTTTGGTTCCGATTCACTGCCAAAGGTCACTCCTCCAATAATATATAGCGGTT 1415
|||| ||||||||||| || ||||||||||||||||| ||||||| |||||| |||||||
Sbjct 1394 TGCATCCCTTTGGTTCTGACTCACTGCCAAAGGTCACACCTCCAAGAATATACAGCGGTT 1453
Query 1416 TGGACACTTGGGATGTTGATGGTCTCCTTGGAGCTGACTTGCTCTCTGAGACTGaaaaaa 1475
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 1454 TGGACACTTGGGATGTTGATGGTCTCCTTGGAGCTGACTTACTCTCAGAGACCGAAAAGA 1513
Query 1476 aGATGTGCAATGAGACCAGAATACTGCCTGTACACTATTTGAAGATGTTGGATATCTTAA 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AGATGTGCAATGAGACCAGAATACTGCCTGTACACTATTTGAAGATGTTGGATATCTTAA 1573
Query 1536 CAAGCGAAATAATGAAGGGGCAGATAAAGAAAAAGTCTGATGCTTATAGCTTCTTCAAAG 1595
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 CAAGAGAAATAAAGAAGGGGCAGATAAAGAAAAAGTCTGATGCTTATAGCTTCTTCAAAG 1633
Query 1596 TAGAGCCGAGTAAAGTAGACAGAGTATATGATATGCTGATTCAGAAGGGAATAGGTGAGT 1655
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 1634 TAGAGCCGAGTAAAGTAGACAGAGTATATGATATGCTGGTTCATAAGGGAATAGGTGACT 1693
Query 1656 CAACATGACTCATTAGCTTCATGGTCCTAACAT--A-T-----A---T-TA---GCCATG 1700
||||||||||||| ||||||||||||||||||| | | | | || ||||||
Sbjct 1694 CAACATGACTCAT-AGCTTCATGGTCCTAACATGTACTTCTCGAACATATATTAGCCATG 1752
Query 1701 TACATATATAGGAAGGTGATGTTGGTTTTGGTTCCACATCTTATTA---GTT--TT--GA 1753
|| ||||| |||||||||||| || |||||||| |||||||| || ||| || ||
Sbjct 1753 TAAATATAAAGGAAGGTGATGCTGATTTTGGTTACACATCTTGTTCTCTGTTAGTTTCGA 1812
Query 1754 CAACTTGACATTGTCTGATTGTTATCTCCTTCGAAGGCTGTTTCAGATCTTTTGATACAA 1813
|||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1813 CAACTTGACAATGTCTGATTGTTATGACCTTCAAAGGCTGTTTCAGATTTTTTGATACAA 1872
Query 1814 CGCTTAAA 1821
|| |||||
Sbjct 1873 CGTTTAAA 1880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5