BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478116
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07790.1 | Symbols: | DGCR14-related | chr3:2487369-2489220... 2693 0.0
> AT3G07790.1 | Symbols: | DGCR14-related | chr3:2487369-2489220
FORWARD LENGTH=1852
Length=1852
Score = 2693 bits (1458), Expect = 0.0
Identities = 1663/1759 (95%), Gaps = 25/1759 (1%)
Strand=Plus/Plus
Query 53 CTTTTTGAATTCGCCG-GCTTCTGATTCAAGATGTTTCTATCGCCTGGTCATTCTCCGCG 111
||||||||||||| || ||||||||||||||||||||| || |||||||||||||| ||
Sbjct 93 CTTTTTGAATTCG-CGTTCTTCTGATTCAAGATGTTTCTTTCACCTGGTCATTCTCCTCG 151
Query 112 GCAGATTTCTTCTCCATCGCCGTCGTCTTATTCCGATGATACCATCCGATCGACGCCTCG 171
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 152 TCAGATTTCTTCTCCATCGCCGTCTTCTTATTCCGATGATACCCTCCGATCAACGCCTCG 211
Query 172 CAGTTCTTCCTCGGAGATCATTCCTCGGAACCCTAGAAAACGGATGAGAGTTCTTGATGA 231
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 212 CAGTTCTTCCTCGGAGATCATTCCTCGAAACCCTAGAAAACGGATGAGAGTTCTCGATGA 271
Query 232 AGATGCGTATGTTGAAGCAATCGAGAAGATCATCGAGCGTGATTATTTTCCGGATATAAC 291
|| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 272 GGACGCTTATGTTGAAGCAATCGAGAAGATCATCGAGCGTGATTACTTTCCAGATATAAC 331
Query 292 TAAGCTTAGGGATCGGCTCGATTGGATCCAAGCGGTTAAAACCCGTGACCCGATTCAAAT 351
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 332 TAAGCTTAGGGATCGGCTCGATTGGATCCAAGCGGTGAAAACCCGTGACCCGATTCAAAT 391
Query 352 CCGAGATGCCCAGTTGAAGATTATCGAGAGGCGTGGAAAGAAGGCGAATCATCATGTTGG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CCGAGATGCCCAGTTGAAGATTATCGAGAGGCGTGGAAAGAAGGCGAATCATCATGTTGG 451
Query 412 GGACACCGAGGGTAAAACTCAAACTCCTGGATCTACTTTTCTCAGAAATTTTACTCCTTT 471
|| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 452 AGATACCGAGGGTAAAACTCAAACTCCTGGATCTACTTTTCTGAGAAATTTCACTCCTTT 511
Query 472 AGATGAATTCGATGGTAAAACCCCTAGAACTCCTGGAGTATCTGGTAGAGAATTTCATGG 531
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 AGATGAATTTGATGGTAAAACCCCTAGAACTCCTGGAGTATCTGGTAGAGAATTTCATGG 571
Query 532 TGGTGAAGTAGATGCTGATGCTGGAGATGGAGATATAGATCTTAATTTGTCCTTAGATGA 591
|| |||||||||||||| || |||||||| |||||||||||||||||||||| |||||||
Sbjct 572 TGTTGAAGTAGATGCTGGTGATGGAGATGAAGATATAGATCTTAATTTGTCCCTAGATGA 631
Query 592 GTTCTTTAGGAGATATACAAGTGAGGATAACGATAGCTTTTCGAAGATTCTTGAGAAGGT 651
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 632 GTTCTTTAGGAGATATACTAGTGAGGATAACGAGAGCTTTTCGAAGATTCTTGAGAAGGT 691
Query 652 AAATAGGAAGAAGAAGGAGAAGTATGGCTTTCTCCTTGAAGGTGAAAAGGAGGATGGGAA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 692 AAATAGGAAGAAGAAGGAGAAGTATGGCTTTCTCCTTGAAGGTGAAAAGGAGGATGGTAA 751
Query 712 ATCGATTGAGGATTTAAAGAGAGATAGGATTACAGATGGGTATGGTACATCTGATCAGCC 771
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 ATCTATTGAGGATGTGAAGAGAGATAGGATTACAGATGGGTATGGTACATCTGATCAGCC 811
Query 772 ACCAAGCACTTTAGAAGGATGGAAATATACTGCGAAGAATCTTCTGATGTACCATCCAGC 831
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 812 ACCGAGTACTTTAGAAGGATGGAAATATACGGCGAAGAATCTTCTGATGTACCATCCAGC 871
Query 832 TGATCGGGGTGAGGCGCCTTTAACTGAGGCGGAAAGGGCTGTGAGATTACTTGGATTGAC 891
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 872 TGATCGGGGTGAGGCGCCTTTAACTGAGGCGGAAAGGGCAGTGAGATTACTTGGATTGAC 931
Query 892 AAAGGAGATTGTTAAAGGGAACACTCGTTTTCATGGGAAGACTATGGATTCTAGGCCAAG 951
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 932 TAAGGAGATAGTTAAAGGGAACACTCGTTTTCATGGTAAGACTATGGATTCTAGGCCAAG 991
Query 952 AGAAGATGGCTCAGTTGAGATTCTCTACACTCCAATCGCAGGTTCTTCCCCGATGCATAT 1011
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGAAGATGGTTCTGTTGAGATTCTCTACACTCCAATCGCAGGTTCTTCCCCGATGCATAT 1051
Query 1012 CTCAGGTAGGGACAGAGACAAATCTAAGAGGTATGATCTTGATGATCTAAGGAAAACCCC 1071
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1052 CTCAGGTAGGGACAGAGACAAGTCTAAAAGGTATGATCTTGATGATCTAAGGAAAACACC 1111
Query 1072 GAATCCTTTCTATGTGGAATCAGATAAGAGGGCAGAGAATGGGTATAGTTTTGTTAGAAC 1131
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1112 GAATCCTTTCTATGTGGAATCAGATAAGAGGGCAGACAATGGGTATAGTTTTGTTAGAAC 1171
Query 1132 GCCTTCTCCTGCTCCAGGTCTTGATGAATCACCCTTTATAACATGGGGTGAGATTGATGG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GCCTTCTCCTGCTCCAGGTCTTGATGAATCACCCTTTATAACATGGGGTGAGATTGATGG 1231
Query 1192 GACACCAATGCGATTAGATCCTGAGGATACACCCATTGATATTGGTGGTAGTGCTGATGG 1251
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1232 GACACCAATGCGATTAGATCTTGAGGATACACCTATTGATATTGGTGGTAGTGCTGATGG 1291
Query 1252 ACCGCACTACAACATTCCATCTGCACCTCCTAGAGATGTAAGGGCACATTCATTATCAAG 1311
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 ACCGCACTATAACATTCCATCTGCACCTCCTAGAGATGTAAGGGCACATTCATTATCAAG 1351
Query 1312 GGATGCATCGCGAAAAATTAGAGAGAGATCAAATAGTATGTTTAAGAAACCTCCGTTGCC 1371
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1352 GGATGCATCGCGAAAACTTAGAGAGAGATCGAATAGTATGTTTAAGAAACCTCCGTTGCC 1411
Query 1372 ATCTCCTCATCGAAGTGGAAGTGCAAGTCCAAATGTTAGGACACTTTCACCCGCTGCTCA 1431
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1412 ATCTCCTCATCGAAGTGGAAGTGCAAGTCCGAATGTTAGGACTCTTTCACCCGCTGCTCA 1471
Query 1432 GAAGTTTTTTAGACGGGCAATAGCTAAATCATCTTCTACTGTTGATGAGAGCCTTCGTGC 1491
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 GAAGTTTTTCAGAAAGGCAATAGCTAAATCATCTTCTACTGTTGATGAGAGCCTTCGTGC 1531
Query 1492 AAGTTATCGTGGAGCAAGTCCT-G-G-------T---G---CTGTGACTCCTAAGAGTGT 1536
|||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct 1532 AAGTTATCGTGGAGCAAGTCCTCGTGGAGCAAGTCCTGGTGCTGTGACTCCTAAGAGTGT 1591
Query 1537 GAGAAGTGTTTCAAGATTTGGCAAAGATGGGACAAGCTCAGAGACAAGGTCGCCTTGATG 1596
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1592 GAGAAGTATTTCAAGATTTGGCAAAGATGGGACCAGCTCAGAGACAAGGTCGCCTTGATG 1651
Query 1597 GCGCAAATGTTATGATTATCTGTTGTTGAATGCTTTGGTGCTCACAGAGGCAACAAAGAG 1656
| || ||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1652 GTGCCAATGTTATGGTTATCTGTTGTTGAATGCTTTGGTGCTCACATAGGCAACAAAGTT 1711
Query 1657 GCTTCTTCTTGTACTACATGTGCTT-T-TGACTT-TCTTTAAATGGAATGCTATCTATCT 1713
||||||||||||| | || | || | |||| | |||||||||||||||||||||||
Sbjct 1712 ACTTCTTCTTGTACCA-AT-TACTGATATGACAGAT-TTTAAATGGAATGCTATCTATCT 1768
Query 1714 TC-CAATTTGTAATTTTGACTTCCACCTCTTCTCTTTTCTCCTAGCTCCCAGGCTACGCA 1772
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1769 TCGCA-TTTGTAATTTTGACTTCCACATCTTCTCTTTTCTCTTAGCTCCCAGGCTACGCA 1827
Query 1773 CTTCAATATTACAACATCA 1791
|||||||||||||||||||
Sbjct 1828 CTTCAATATTACAACATCA 1846
Score = 91.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 TTTTCCTGTCTACCCAAAAACAAACCCTAGTGTCCGAATTCTCGACAAA 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 TTTTCCTGTCTACCCAAAAACAAACCCTAGTGTCCGAATTCTCGACAAA 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5