BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478117
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07800.1 | Symbols: | Thymidine kinase | chr3:2489387-24910... 1751 0.0
> AT3G07800.1 | Symbols: | Thymidine kinase | chr3:2489387-2491087
REVERSE LENGTH=1426
Length=1426
Score = 1751 bits (948), Expect = 0.0
Identities = 1178/1284 (92%), Gaps = 36/1284 (3%)
Strand=Plus/Plus
Query 107 TCTGCCATGGCGACTCTCAAAGCTTCGTTTTTGCTCAAAACCCTCGACAGTGACGTCGCC 166
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||
Sbjct 147 TCTGCCATGGCGACTCTCAAAGCTTCCTTTTTGATCAAAACCCTCGACAGTGACGTCACC 206
Query 167 GGGGATGTTCTCTCCGATCTGGAACGTCGTGGGTCAGGTGCTATTCATGTTATCATGGGT 226
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 207 GGAGATTTTCTCTCCGATCTGGAACGTCGTGGGTCAGGTGCTGTTCATGTTATCATGGGT 266
Query 227 CCTATGTTTTCTGGGAAATCGACCTCTCTCCTCCGCCGAATCAAGTCAGAGATTAGCGAC 286
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 267 CCTATGTTTTCTGGGAAATCGACCTCTCTCCTTCGCCGAATCAAGTCAGAGATCAGCGAC 326
Query 287 GGAAGAAGTGTTGCGATGCTGAAATCGAGTAAGGATACGAGATACGCCAAAGATTCAGTG 346
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 327 GGAAGAAGTGTTGCGATGCTGAAATCGAGTAAGGATACGAGATACGCAAAAGATTCGGTG 386
Query 347 GTGACACATGATGGAATTGGATTCCCTTGCTGGGCTCTTCCAGATCTCATGTCATTTCCT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTGACACATGATGGAATTGGATTCCCTTGCTGGGCTCTTCCAGATCTCATGTCATTTCCT 446
Query 407 GAGAAATTCGGACAAGATGCTTATAACAAGCTTGATGTGATTGGTATTGATGAGGCTCAG 466
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GAGAAATTCGGACTAGATGCTTATAACAAGCTTGATGTGATTGGTATTGATGAGGCTCAG 506
Query 467 TTCTTTGGAGATCTTTATGAGTTTTGCTGCAAAGTCGCTGATGATGATGGCAAAACTGTG 526
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 507 TTCTTTGGAGATCTTTATGAGTTTTGCTGCAAAGTCGCTGATGATGATGGTAAAATTGTG 566
Query 527 ATCGTTGCTGGCCTAGATGGTGACTATCTAAGGAGGAGCTTTGGCGCTGTACTTGACATT 586
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 567 ATCGTTGCTGGCCTAGATGGTGACTATTTAAGGAGGAGTTTTGGGGCTGTACTTGACATT 626
Query 587 ATACCAATAGCTGACTCTGTGACTAAGCTAACTGCAAGGTGTGAGGTTTGTGGACATAAA 646
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 627 ATACCAATAGCTGATTCTGTGACTAAGCTAACTGCAAGGTGTGAGGTCTGTGGACATAAA 686
Query 647 GCTTTCTTCACTCTAAGAAAGAATTGTGACACCAGAACTGAGCTTATTGGTGGAGCTGAT 706
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GCTTTCTTCACTTTAAGAAAGAATTGTGACACCAGAACTGAGCTTATTGGTGGAGCTGAT 746
Query 707 GTCTATATGCCTGTTTGTCGCAAGCATTACATCACTAATCACATT---A--AA-GCTTCT 760
||||||||||||||||||||||||||||||||||||||||| ||| | || || |||
Sbjct 747 GTCTATATGCCTGTTTGTCGCAAGCATTACATCACTAATCATATTGTTATTAAAGCCTCT 806
Query 761 AAGAAAGTGTTTGAAGATTCTGACAAGGCAAGACCTGAATCCTGTGTTGCTGCTACCATC 820
|||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 807 AAGAAAGTCTTGGAAGATTCTGACAAGGCTAGAGCTGAATCCTGTGTTGCTGCTACAATC 866
Query 821 TAACTATAAATGATATGGAACAAGTAACATCTGTTATAGTGAAAttttctt-cttttttg 879
|||||||||||||||||||||||| ||||| |||||| ||||| ||||||| ||||||||
Sbjct 867 TAACTATAAATGATATGGAACAAGCAACATATGTTATGGTGAAGTTTTCTTTCTTTTTTG 926
Query 880 cttgtttggtttttttACTGGTCTGGTTTATCCTCAATGTTGTCTTTGAAATACACTTGT 939
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 927 GTTGTTTGGTTTCTTTACTGGTCTGGTTTATCCTTAATGTTGTCTTTGAAATACACTTGT 986
Query 940 GATGTTCCTTGTATATAAATATAAGTTTGATGCTTTCTCTATATCATCTGGTCCATGTTT 999
||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 987 GATGTTCATTGTATATAAATATAAGTTTGATGCTTTCTCTACAGCCTCTGGTCCATGTTT 1046
Query 1000 TATGCT-TTCTACTGGCGAT-ATCCACTTGGTTTCTCGAGTTGGACTTACAATTTTACTT 1057
|| || ||| | | | | | |||||| |||| |||||||||||||||||| || | |
Sbjct 1047 CATACTCTTC-ATTTTCCAAGA-CCACTTAGTTTTTCGAGTTGGACTTACAATGTTGCGT 1104
Query 1058 ATGAGAGGTTGTTGTGTGACAGAAGCATTTCTTTCATCAGATCCTG-ATCTGATACTTGT 1116
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1105 ATGAGAGGTTGTTTTGTGACAGAAGCATTTCTTTCATCAGATCCTGGATTTGATACTTGT 1164
Query 1117 GGATTCGAATTCCTCCATTGTTGCATGGCTCTATCTGCTTTAAGAAACACTGtttttttG 1176
||||||| |||| ||||||||||||| ||||| | |||||||| ||||||||| |||
Sbjct 1165 GGATTCGCATTCTTCCATTGTTGCATTGCTCTG---G-TTTAAGAAGCACTGTTTTCTTG 1220
Query 1177 ATCCACCTTCATCACTGAAAGGGATCTCTAGGGAGCAA------G-T-CT--------C- 1219
|||||||||||||||||||||| ||||||||||||||| | | || |
Sbjct 1221 ATCCACCTTCATCACTGAAAGGTATCTCTAGGGAGCAAACTATTGATGCTAGAGGTGTCT 1280
Query 1220 C-ACTGTTGTGAATCTTGAATCACCCTTTGGACC-AGGACCATAGGTCTTGACATTTATG 1277
| |||||||||||||| ||||||| ||||||||| || ||||||| ||||||||| || |
Sbjct 1281 CCACTGTTGTGAATCTCGAATCACTCTTTGGACCGAG-ACCATAGATCTTGACATCTACG 1339
Query 1278 TCTACTTCATGCTGCAGTGAAGATTGAAACTCTTGTTGCAGTCGGTTCTGTCTCCTGATT 1337
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1340 TCTACTTCATGCTGCTGTGAATATTGAAACTCTTGTTGCAGTCGGTTCTGTCTCCAGATC 1399
Query 1338 TTATTGTAAAGATACACAAACATT 1361
||| ||||| |||||| |||||||
Sbjct 1400 TTAATGTAAGGATACATAAACATT 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5