BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478119
Length=2365
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3738 0.0
> AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492293-2495750 FORWARD LENGTH=2451
Length=2451
Score = 3738 bits (2024), Expect = 0.0
Identities = 2291/2411 (95%), Gaps = 53/2411 (2%)
Strand=Plus/Plus
Query 1 TCTCTATCTCTAGAGCGCGTCCCTGCGCGTCGTCAGTATGTTTTTATTGACGCCATTGAA 60
||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 28 TCTATATCTCTAGAGCGCGTTACTGCGCGTCGTGAGTATGTTTTTATTGACGCCATTGAA 87
Query 61 ATTGGGTTAAATCGGATTGAACaaaaaaaaaaaaaaaaaaaCTGTATTAATAATAATTCC 120
||||||||||||||| ||| || | || |||||||||||||||||||||||
Sbjct 88 ATTGGGTTAAATCGGTTTG----AATCGGATTGAACAAAAACTGTATTAATAATAATTCT 143
Query 121 TACT-T--TTCTCTCTTCTGATTGATTCCAATCTTGTTTCA--------TT-TTCTTCTT 168
| || | || |||| ||||||||||||||||||| ||||| || ||||||||
Sbjct 144 TCCTCTACTTTTCTC-TCTGATTGATTCCAATCTTCTTTCATTTTCTTCTTCTTCTTCTT 202
Query 169 CTGGGGAAGGGGCAGGTT-AAATTATGCCCTCTATTCAAA---T--C-ATCCTCAGATCT 221
|||||||||||||||||| |||||||||| |||||||||| | | ||||||||||||
Sbjct 203 CTGGGGAAGGGGCAGGTTAAAATTATGCCATCTATTCAAATCGTGCCTATCCTCAGATCT 262
Query 222 T-AGTGTTTTCTCGACGAGATTCGGCATCTGGGTTTTATTCTTATTGAGCAAAATGCAAT 280
| | | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 263 TAACTCTTTTCTCTACGAGATTCGGCATCTGGGTTTTATTCTTCTTGAGCAAAATGCAAT 322
Query 281 CGGATAATGGAAAGCTTTTCATCGGTGGGATATCTTGGGACACCAATGAGGAACGTCTCA 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CGGATAATGGAAAGCTTTTCATCGGTGGGATATCTTGGGACACCAATGAGGAACGTCTCA 382
Query 341 AGGAGTATTTCAGCAGTTTTGGAGAAGTGATCGAGGCTGTCATCTTGAAAGATCGCACCA 400
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 383 AGGAGTATTTCAGCAGTTTTGGAGAAGTGATCGAAGCTGTCATCTTGAAAGATCGTACCA 442
Query 401 CTGGTCGTGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAGATTG 460
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 443 CTGGTCGTGCTCGTGGTTTCGGTTTTGTTGTTTTTGCTGATCCTGCTGTTGCTGAGATTG 502
Query 461 TTATCACGGAGAAACATAATATTGATGGGAGATTGGTTGAAGCCAAGAAAGCTGTTCCCA 520
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 503 TTATCACCGAAAAACATAATATTGATGGCAGATTGGTTGAAGCCAAGAAAGCTGTTCCCA 562
Query 521 GAGATGACCAAAACATGGTAAATAGAAGCAACAGCAGCAGCATCCAAGGTTCTCCCGGGG 580
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 563 GAGATGACCAAAACATGGTAAATAGAAGCAACAGCAGTAGCATCCAAGGTTCTCCCGGTG 622
Query 581 GTCCAGGTCGCACAAGGAAGATATTTGTTGGAGGATTACCTTCCTCTGTTACAGAGAGCG 640
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 623 GTCCAGGTCGCACAAGGAAGATATTTGTTGGAGGATTACCTTCTTCGGTTACAGAGAGTG 682
Query 641 ATTTCAAGACGTATTTTGAGCAGTTTGGAACAACTACGGATGTGGTTGTTATGTATGATC 700
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 683 ATTTCAAGACGTATTTTGAGCAGTTTGGTACAACTACGGATGTGGTTGTCATGTATGATC 742
Query 701 ACAACACACAAAGGCCTAGAGGTTTCGGATTTATAACCTACGATTCCGAGGAGGCAGTTG 760
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 743 ACAACACACAAAGGCCTAGAGGTTTCGGGTTTATAACCTACGATTCCGAGGAGGCGGTTG 802
Query 761 AAAAGGTATTGCTCAAGACATTCCATGAACTAAATGGTAAAATGGTTGAGGTTAAGCGAG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AAAAGGTATTGCTCAAGACATTCCATGAACTAAATGGTAAAATGGTTGAGGTTAAGCGAG 862
Query 821 CTGTTCCAAAGGAGTTATCTCCAGGTCCAAGTCGCAGCCCTCTTGGTGCAGGTTACAGCT 880
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 863 CTGTTCCAAAGGAGTTATCTCCAGGTCCAAGTCGCAGTCCTCTTGGTGCAGGTTACAGCT 922
Query 881 ATGGAGTTAATAGGGTCAATAACCTTCTTAATGGATATGCTCAAGGGTTTAATCCCGCTG 940
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 923 ATGGAGTTAATAGGGTCAATAACCTCCTTAATGGGTATGCTCAAGGGTTTAATCCCGCTG 982
Query 941 CAGTTGGAGGCTACGGACTTAGGATGGATGGTCGGTTCAGTCCGGTTGGTGCTGGAAGAA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CAGTTGGAGGCTACGGACTTAGGATGGATGGTCGGTTCAGTCCGGTTGGTGCTGGAAGAA 1042
Query 1001 GCGGGTTTGCAAATTTCAGTTCTGGCTACGGGATGAATGTGAACTTTGAGCAGGGGTTGC 1060
||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1043 GCGGGTTTGCAAATTACAGTTCTGGATACGGGATGAATGTGAACTTTGATCAGGGATTGC 1102
Query 1061 CCACAGGGTTCACGGGAGGTACGAATTTCAATGGAAATGTTGACTATGGCCGAGGAATGA 1120
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1103 CCACAGGGTTCACGGGAGGTACAAATTACAATGGAAATGTTGACTATGGCCGAGGAATGA 1162
Query 1121 GCCCGTACTACATTGGTAACACAAACAGGTTTGGTCCTGCGGTTGGCTATGAAGGGGGCA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GCCCGTACTACATTGGTAACACAAACAGGTTTGGTCCTGCGGTTGGCTATGAAGGGGGCA 1222
Query 1181 ATGGAGGAGGAAACTCATCCTTCTTCAGTTCGGTTACACGAAACCTATGGGGAAACAACG 1240
| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 1223 ACGGAGGAGGAAACTCATCCTTCTTCAGTTCGGTTACACGGAACTTATGGGGAAACAATG 1282
Query 1241 GCGGTCTTAACTATAACAACAACACTACAAACTCAAATTCCAATACATACATGGGAGGAT 1300
| |||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||
Sbjct 1283 GTGGTCTTAACTATAACAACAATAATACAAACTCAAACTCCAATACATATATGGGAGGAT 1342
Query 1301 CATCAAGTGGGAACAACACACTTAGTGGTCCATTTGGAAATTCTGGAGTCAATTGGGGTG 1360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1343 CATCAAGTGGGAACAACACACTTAGTGGTCCATTTGGAAATTCAGGAGTCAATTGGGGTG 1402
Query 1361 CTCCTGGAGGAGGAAACAATGCTGTTAGTAACGAGAACGTGAAGTTTGGTTATGGAGGAA 1420
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1403 CTCCTGGAGGAGGAAACAATGCTGTGAGTAACGAGAATGTGAAGTTTGGTTATGGAGGAA 1462
Query 1421 ACGGTGAATCTGGTTTTGGGTTGGGAACAGGTGGTTATGCAGCAAGAAACCCAGGGGCTA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 ACGGTGAATCTGGTTTTGGGTTGGGAACAGGTGGTTATGCAGCAAGAAACCCAGGGGCTA 1522
Query 1481 GCAAGGCAGCACCATCGTCTTCATTCTCTTCTGCCTCGGCAACCAACAACACGGGTTATG 1540
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1523 ACAAGGCAGCACCATCCTCTTCATTCTCTTCTGCCTCAGCAACCAACAACACGGGTTATG 1582
Query 1541 ATACAGCAGGACTTGCAGAGTTTTACGGGAATGGTGCAGTTTATAGTGATCCC-ACATGG 1599
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1583 ATACAGCAGGACTTGCAGAGTTTTACGGGAATGGTGCAGTTTATAGTGA-CCCTACATGG 1641
Query 1600 AGATCACCAACTCCTGAGACAGAAGGGCCTGCTTCTTTTAGCTATGGGATTGGAGGAGGA 1659
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1642 AGATCACCAACTCCTGAGACAGAAGGGCCTGCTCCTTTTAGCTATGGGATTGGAGGAGG- 1700
Query 1660 GG-TCCTTCTTCAGATGTTTCAGCTAGAAGTTCATCTCCAGGTTATGTTGGCAGTTACAG 1718
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 GGTTCCTTCTTCAGATGTTTCAGCTAGAAGTTCATCTCCAGGTTATGTTGGCAGTTACAG 1760
Query 1719 TGTGAACAAGAGACAACCAAACAGAGGCGAGCCATCACGGTGAACGATCTGTGTCTTTTG 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 TGTGAACAAGAGACAACCAAACAGAGGCGAGCCATCACGGTGAACGATCTGTGTCTTTTG 1820
Query 1779 GCGAATCTTTTAGATTATCTTCTTTTCC-TTCATACAAAGCCAGTGAGGACGAAACTTGA 1837
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1821 GCGAATCTTTTAGATTATCTTCTTTTCCCTTCATACAAAGCCAGTGAGGACGAAACTTGA 1880
Query 1838 TCATATCATCACCTAGAGCTAACCAGAGAATCCCGCAGACTTTTCTGTCATGGTTTGGTT 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 TCATATCATCACCTAGAGCTAACCAGAGAATCCCGCAGACTTTTCTGTCATGGTTTGGTT 1940
Query 1898 TTCTAAATTCATTGTTCCTCCTAGGcttttttctgctttcttttttt--ctatttttgtt 1955
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1941 TTCTAAATTCATTGTTCCTCCTAGGCTTTTTTCTGCTTTCTTTTTTTTTCTATTTTTGTT 2000
Query 1956 ttcttttcttctttcAATGAGGGACAGAAGAAACTGTATCAGTCTCCGGCGAGGCGGTAA 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 TTCTTTTCTTCTTTCAATGAGGGACAGAAGAAACTGTATCAGTCTCCGGCGAGGCGGTAA 2060
Query 2016 TACATAAGAAGAGTTCaaaacaaaaacc-aaaaaaaaaaaaaa-----t--tc-ttcttc 2066
|||||||| ||||||||||||||||||| |||||||||||||| | || ||||||
Sbjct 2061 TACATAAGGAGAGTTCAAAACAAAAACCCAAAAAAAAAAAAAAAAAGATGATCCTTCTTC 2120
Query 2067 ctctgttttcttcttcattgtcatgtaatggttcttcttctt--cttcttcttGGGGGTT 2124
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2121 CTCAGTTTTCTTCTTCATTGTCATGTAATGGTTCTTCTTCTTTTCTTCTTCTTGGGGGTT 2180
Query 2125 ATGGTTAAGGTTTGTGTTTTGAGGCAGATTGTATTAGAgttttt---c-t----cttttg 2176
||||||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 2181 ATGGTTAAGGTTTGTGTTTTGAGGCAGATTGTACTAGAGTTTTTTTTCATGTTTCTTTTG 2240
Query 2177 ttttgtcgtttt-aagtccttt-gttttgtttttgATAGTGTGAGATATGGAAAGAGGAT 2234
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2241 TTTTGTCGTTTTTAAGTCCTTTTGTTTTGTTTTTGATAGTGTGAGATATGGAAAGAGTAT 2300
Query 2235 TTAGCCATGTAGGGCTTTCGAGAATAAGTCTTTTTATCACTATGAGATTATTTTGTTCTC 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2301 TTAGCCATGTAGGGCTTTCGAGAATAAGTCTTTTTATCACTATGAGATTATTTTGTTCTC 2360
Query 2295 AAGCTGTTTGTATGTCTTATGCGAACGCAAGCAAACTCGTTTCTGTTGATGTACTTCTAT 2354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2361 AAGCTGTTTGTATGTCTTATGCGAACGCAAGCAAACTCGTTTCTGTTGATGTACTTTTAT 2420
Query 2355 TTTATAGAAAA 2365
|||||||||||
Sbjct 2421 TTTATAGAAAA 2431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117419074755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5