BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478120
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07820.1 | Symbols: | Pectin lyase-like superfamily protein... 2037 0.0
AT3G07840.1 | Symbols: | Pectin lyase-like superfamily protein... 1081 0.0
AT3G07830.1 | Symbols: | Pectin lyase-like superfamily protein... 1014 0.0
AT5G48140.1 | Symbols: | Pectin lyase-like superfamily protein... 922 0.0
> AT3G07820.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2496440-2498095 REVERSE LENGTH=1400
Length=1400
Score = 2037 bits (1103), Expect = 0.0
Identities = 1280/1364 (94%), Gaps = 17/1364 (1%)
Strand=Plus/Plus
Query 3 AAAATAGAATAACAAATAGTAATAGTAGTAAT-ATTTTAtt-ttttttt-GGG-AAAAAT 58
|||||||||||||||||||||||| ||||| | ||||| || ||||||| ||| ||||||
Sbjct 10 AAAATAGAATAACAAATAGTAATATTAGTAGTAATTTTTTTATTTTTTTGGGGAAAAAAT 69
Query 59 GGGTGCATATTTTGGAGTTTCTACCATATTAATTATCTGTTTGTTGGGAATTTCAGCCAA 118
||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 70 GGGTGGATATTTTGGAGTTTCTACAATTTTTATTATCTGTTTGTTGGGAATTTCAGCCAA 129
Query 119 TGCTGAGGTATTCACCATTGGTTCGTCATCAGGTTCTGATATTACTCAGGCCCTTCTGAA 178
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 130 TGCTGAGGTATTCACCATTGGTTCTTCATCAGGTTCTGATATTACTCAGGCACTTCTGAA 189
Query 179 AGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTGATCCCAAAAGGAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTGATCCCAAAAGGAGA 249
Query 239 GTTCAAGCTTGGTGAGATCGAGATGAGGGGTCCATGCAAAGCTCCCGTTGAGGTCACCCT 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 250 GTTCAAGCTTGGTGAGATCGAGATGAGGGGTCCATGCAAAGCTCCCATTGAGGTCACCCT 309
Query 299 TCAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGAAAGGAGAAATGGGTCGTCTT 358
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 310 TCAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGGAAGGAAAAATGGGTCGTCTT 369
Query 359 CGGCAACATTGATGGCTTTAAGTTGAACGGAGGTGGAGCCTTCGACGGTGAAGGAAACT- 417
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 370 CGGCAACATTGATGGCTTTAAGTTGAACGGAGGAGGAGCCTTCGACGGTGAAGGCAA-TG 428
Query 418 CTGCGTGGAGGGTCAACAACTGCCACAAGACCTTCAACTGCAAGAAACTTCCCATCAGTA 477
| || ||||| ||||| ||||| |||||||| ||| | ||||||||||||||||||||||
Sbjct 429 CAGCTTGGAGAGTCAATAACTGTCACAAGACTTTCGAGTGCAAGAAACTTCCCATCAGTA 488
Query 478 TAAGGTTTGACTTCGTGTTGAACTCTGAGATCAGAGACATATCCTCGATCGATGCAAAGA 537
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 489 TAAGGTTTGACTTCATATTGAACTCTGAGATCAGAGACATATCCTCGATCGATGCCAAGA 548
Query 538 ATTTCCACATCAACGTGTTGGGAGCCAAGAACATGACCATGGATAACATCAAGATCATCG 597
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 549 ACTTCCACATCAACGTGTTGGGAGCCAAGAACATGACCATGAATAACATCAAGATCGTCG 608
Query 598 CTCCAGAGGAGAGTCCCAACACTGATGGGATCCATTTGGGAAGAAGTGACGGAGTCAAGA 657
| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 609 CCCCAGAAGACAGTCCCAACACTGATGGAATCCATTTGGGAAGAAGTGACGGAGTCAAGA 668
Query 658 TCCTTAACTCTTTCATCTCCACCGGAGACGATTGCATCTCCGTTGGAGATGGGATGAAGA 717
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 669 TCCTTAACTCTTTCATCTCCACCGGAGACGATTGTATCTCCGTCGGAGATGGGATGAAGA 728
Query 718 ACCTTCACGTGGAGAAAGTTACATGCGGTCCAGGACACGGAATCAGTGTCGGAAGCCTTG 777
|||||||||||||||| || ||||||||||| |||||||||||||||||||| || ||||
Sbjct 729 ACCTTCACGTGGAGAAGGTCACATGCGGTCCGGGACACGGAATCAGTGTCGGGAGTCTTG 788
Query 778 GAAGGTACGGACACGAGCAAGACGTCAGCGGCATTAAGATCATCAACTGCACTCTCCAAG 837
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 789 GAAGGTACGGACACGAGCAAGATGTCAGCGGCATTAAGGTCATCAACTGCACTCTTCAAG 848
Query 838 AGACTGACAACGGGTTGAGAATCAAGACATGGCCCTCTGCAGCTTGCTCCACCACCGCCT 897
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 849 AGACTGACAACGGGTTGAGGATCAAGACATGGCCCTCTGCAGCTTGCTCCACCACCGCAT 908
Query 898 CGGATATCCATTTCGAGGATATCATCGTCAAGAACGTTAGCAACCCAATCCTCATCGACC 957
| ||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 909 CCGATATTCATTTCGAGGATATTATCCTCAAGGACGTTAGCAACCCAATCCTCATCGACC 968
Query 958 AAGAGTACTGCCCTTGGAACCAATGCAACAAGCAAAAAGCATCAACAATTAAGTTGGTGA 1017
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 969 AAGAGTACTGCCCTTGGAACCAGTGCAACAAGCAAAAAGCATCAACAATTAAGTTGGTGA 1028
Query 1018 ACATAAGCTTCAAGAATATCAGAGGAACATCAGGGAACAAGGACGCGGTGAAGCTACTTT 1077
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 ACATTAGCTTCAAGAACATCAGAGGAACATCAGGGAACAAGGACGCGGTGAAGCTACTTT 1088
Query 1078 GCAGCAAGGGATATCCGTGCCAGAACGTGGAGATTGGAGACATTGATATTAAGTACAATG 1137
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1089 GCAGCAAGGGGTATCCGTGCCAGAACGTGGAGATTGGAGACATTGATATCAAGTACAATG 1148
Query 1138 GAGCCGATGGTCCAGCGACTTTCCAATGTTCAAATGTCAGTCCCAAACTCTTGGGATCTC 1197
|||| ||||||||||| |||||||| || ||||| |||||||||||| ||||||||||||
Sbjct 1149 GAGCAGATGGTCCAGCCACTTTCCATTGCTCAAACGTCAGTCCCAAAATCTTGGGATCTC 1208
Query 1198 AGAGCCCTAAAGCATGCAGCGCTCAAGCAGCCTAAATGTAGAAGCTCTAAAACAATTAAT 1257
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1209 AGAGCCCTAAAGCATGCAGCGCTCCAGCAGCCTAAATGTAGAAGCTCTAAAACAATTAAT 1268
Query 1258 TAATCAAACACCCATTCA-TT---TTTTATATGT-A-TTTCTTCTATACATTAACTATAT 1311
||||||||||| |||||| || |||||||| | | ||||||||| ||| |||||||||
Sbjct 1269 TAATCAAACACTCATTCAATTCAATTTTATATATGAATTTCTTCTACACAGTAACTATAT 1328
Query 1312 TTGATGTATGCTCTCATTCTATTTAATTCAACAATGAATGCATC 1355
|||||||||||||||| || | ||||||||||||||||||
Sbjct 1329 ACGATGTATGCTCTCATT-TA---A-TTCAACAATGAATGCATC 1367
> AT3G07840.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2501893-2503565 REVERSE LENGTH=1296
Length=1296
Score = 1081 bits (585), Expect = 0.0
Identities = 966/1145 (84%), Gaps = 46/1145 (4%)
Strand=Plus/Plus
Query 98 TTTGTTGGGAATTTCAGCCAATGCTGAGGTATTCACCATTGGTTCG-TCAT-CAGGTTCT 155
|||| ||||| ||||||||||||||||||| |||| | |||| | | || | ||||||||
Sbjct 135 TTTGCTGGGATTTTCAGCCAATGCTGAGGTGTTCAACGTTGG-TGGTTC-TCCAGGTTCT 192
Query 156 GATATTACTCAGGCCCTTCTGAAAGCATTCACATCGGCATGCCAATCTTCGTCACCAAGC 215
|||||||||||||| |||||||||||||||||||| ||||||||| || || || | |||
Sbjct 193 GATATTACTCAGGCACTTCTGAAAGCATTCACATCAGCATGCCAAGCTCCGACAGCGAGC 252
Query 216 AAAGTGGTGATCCCAAAAGGAGAGTTCAAGCTTGGTGAGATCGAGATGAGGGGTCCATGC 275
|| ||||||||| |||| || |||||||||||||||||||||||||||| ||| ||||||
Sbjct 253 AAGGTGGTGATCACAAAGGGTGAGTTCAAGCTTGGTGAGATCGAGATGACGGGCCCATGC 312
Query 276 AAAGCTCCCGTTGAGGTCACCCTTCAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAA 335
|||||||| || ||| ||| ||| ||||||||| |||||||||| || || ||||||||
Sbjct 313 AAAGCTCCAGTCGAGATCAACCTCCAAGGTACTCTCAAAGCTGATGGAAAAGCTATCCAG 372
Query 336 GGAAAGGAGAA-ATGGGTCGTCTTCGGC-AA-CATTGATGGCTTTAAGTTGAACGGAGGT 392
|| ||||| || ||||||||||||| | || ||| ||||||||||||| |||||||||
Sbjct 373 GGGAAGGA-AAGATGGGTCGTCTTC--CTAAGAATTAATGGCTTTAAGTTAAACGGAGGT 429
Query 393 GGAGCCTTCGACGGTGAAGGAAACT-CTGCGTGGAGGGTCAACAACTGCCACAAGACCTT 451
||| ||||||||||||||| || | | || ||||| ||||| ||||| |||||||| ||
Sbjct 430 GGAATCTTCGACGGTGAAGGCAA-TGCAGCTTGGAGAGTCAATAACTGTCACAAGACTTT 488
Query 452 CAACTGCAAGAAACTTCCCATCAGTATAAGGTTTGACTTCGTGTTGAACT-CTGAGATCA 510
| | |||||||||||||||||||||||||||||||| |||||| ||| | ||||||| |
Sbjct 489 CGAGTGCAAGAAACTTCCCATCAGTATAAGGTTTGATTTCGTGGAGAA-TGCTGAGATTA 547
Query 511 GAGACATATCCTCGATCGATGCAAAGAATTTCCACATCAACGTGT-TGGGAGCCAAGAAC 569
|||||||||||||||| ||||| ||||| |||||||| ||||| | | || |||||||||
Sbjct 548 GAGACATATCCTCGATAGATGCTAAGAACTTCCACATAAACGT-TCTCGGCGCCAAGAAC 606
Query 570 ATGACCATGGATAACATCAAGATCATCGCTCCAG-AGGAGAGTCCCAACACTGATGGGAT 628
|||||| | |||||| ||||| |||||||||| | || |||| ||||||||||| || ||
Sbjct 607 ATGACCTTTGATAACGTCAAGGTCATCGCTCCGGCAG-AGAGCCCCAACACTGACGGTAT 665
Query 629 CCATTTGGGAAGAAGTGACGGAGTCAAGATCCTTAACTCTTTCATCTCCACCGGAGACGA 688
|||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||
Sbjct 666 CCATTTGGGAAGAAGTGAAGGAGTCAAGATCCTCAACTCTAAGATAGCCACCGGAGATGA 725
Query 689 TTGCATCTCCGTTGGAGATGGGATGAAGAACCTTCACGTGGAGAAAGTTACATGCGGTCC 748
|||||||| ||||| ||||||||||||||||| ||||| ||||| |||| ||||||||
Sbjct 726 CTGCATCTCTGTTGGGGATGGGATGAAGAACCTCCACGTCGAGAACGTTATGTGCGGTCC 785
Query 749 AGGACACGGAATCAGTGTCGGAAGCCTTGGAAGGTACG-GACACGAGCAAGACGTCAGC- 806
|||||||||||||||||||| || ||||||||||||| | || |||||||| |||| |
Sbjct 786 TGGACACGGAATCAGTGTCGGGAGTCTTGGAAGGTACGTG-CATGAGCAAGATGTCA-CA 843
Query 807 GGCATTAA-GATCATCAACTGCACTCTCCAAGAGA-CTGACAACGGGTTGAGAATCAAGA 864
||||||| | || | |||||||| || || | || ||||||| ||| | || |||||||
Sbjct 844 GGCATTACTG-TCGTGAACTGCACCCTTCAGG-GAACTGACAATGGGCTAAGGATCAAGA 901
Query 865 CATGGCCCTCTGCAGCTTGCTCCACCACCGCCTC-GGATATCCATTTCGAGGATATCATC 923
||||||| ||||| |||||| ||||||||||||| || ||| ||||| ||| | ||||||
Sbjct 902 CATGGCCATCTGCGGCTTGCGCCACCACCGCCTCTGG-TATTCATTTTGAGAACATCATC 960
Query 924 GTCAAGAACGTTAGCAACCCAATCCTCATCGACCAAGAGTACTGCCCTTGGAACCAATGC 983
| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 961 CTTAACAACGTTAGCAACCCAATCCTCATTGACCAGGAGTACTGCCCTTGGAACCAGTGC 1020
Query 984 AACAAGCAAAAAGCATCAACAATTAAGTTGGTGAACATAAGCTTCAAGAATATCAGAGGA 1043
|||||||| ||| |||| || |||||| ||||| ||||||||||||||||||| ||||||
Sbjct 1021 AACAAGCAGAAACCATCGACGATTAAGCTGGTGGACATAAGCTTCAAGAATATTAGAGGA 1080
Query 1044 ACATCAGGGAACAAGGACGCGGTGAAGCTACTT-TGCAGCAAGG-GATATCC--GTGCCA 1099
|||||||||||||||||||| ||||||||| || |||||||||| | |||| ||||
Sbjct 1081 ACATCAGGGAACAAGGACGCAGTGAAGCTA-TTGTGCAGCAAGGCGC-ATCCATGTGC-- 1136
Query 1100 GAACGTGGAGATTGGAGACATTGATATTAAGTACAATGGAGCCGATGGTCCAGCGACTTT 1159
||| || ||||||||| ||||| | || ||||||| ||||||||||||||| |||||||
Sbjct 1137 GAATGTTGAGATTGGAAACATTAACCTTGAGTACAAGGGAGCCGATGGTCCACCGACTTT 1196
Query 1160 CCAATGT--TCAAATGTCAGTCCCA-AA-CTCT-TGGGATCTCAGAGCCCTAAAGCATGC 1214
| | ||| ||||| || |||| || || | ||||| |||||| ||| || || ||
Sbjct 1197 C-A-TGTGCTCAAACGTT--TCCCCTAAGCT-TGTGGGAACTCAGAACCCGAAGGCTTGT 1251
Query 1215 AGCGC 1219
|||||
Sbjct 1252 AGCGC 1256
> AT3G07830.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2499243-2501021 REVERSE LENGTH=1460
Length=1460
Score = 1014 bits (549), Expect = 0.0
Identities = 975/1178 (83%), Gaps = 39/1178 (3%)
Strand=Plus/Plus
Query 53 AAA-AATGGGTGCATATTTTGGAGTTTCTACCATATTAATTATCTGTTTGTTGGGAATTT 111
||| ||||||| ||||||||||| ||||||| || || | || |||||| ||||| |||
Sbjct 51 AAATAATGGGTTCATATTTTGGAATTTCTACAATTTTCGTGATATGTTTGCTGGGATTTT 110
Query 112 CAGCCAATG--C-TGAGGT-ATTCACCA-TT-GGTTCGTCAT-CAGGTTCTGATATTACT 164
||||||||| | |||||| || | | || | || || | ||||||||||||||||
Sbjct 111 CAGCCAATGCTCATGAGGTGCTT-A-GACTTACG-TCTTC-TCCAGGTTCTGATATTACG 166
Query 165 CAGGCCCTTCTGAAAGCATTCACATCGGCATGCCAATCTTCGTCACCAAGCAAAGTGGTG 224
||||| ||||||| |||||||||| |||||||||||||| || |||| || || ||||||
Sbjct 167 CAGGCGCTTCTGAGAGCATTCACAACGGCATGCCAATCTCCGACACCGAGGAAGGTGGTG 226
Query 225 ATCCCAAAAGGAGAGTTCAAGCTTGGTGAGATCGA-GATGAGGGGTCCATGCAAAGCTCC 283
|||||||||||| |||||||||||||||||||| | |||| ||||||||||||| ||||
Sbjct 227 ATCCCAAAAGGACAGTTCAAGCTTGGTGAGATC-ATGATGTCGGGTCCATGCAAATCTCC 285
Query 284 CGTTGAGGTCACCCTT-CAAGGTACTGTCAAAGCTGACGGTAACGCTATCCAAGGAAAGG 342
|| ||| ||| |||| | ||| |||||| |||||||| ||| | ||||| ||||| |
Sbjct 286 AGTCGAGATCA-CCTTGCTAGGCACTGTCCTCGCTGACGGAAACTCGATCCATGGAAAAG 344
Query 343 AGAAATGGGTCGTCTTCGGC-AA-CATTGATGGCTTTAAGTTGAACGGAGGTGGAGCCTT 400
| ||||||||||| ||| | || || ||||| || | |||||||||||||||| | ||
Sbjct 345 AAAAATGGGTCGTGTTC--CAAAGAATGGATGGGTTCAGGTTGAACGGAGGTGGAACTTT 402
Query 401 CGACGGTGAAGGAAACTCTGCGTGGAGGGTCAACAACTGCCACAAGACCTTCAACTGCAA 460
|||||||||||| ||| | || ||||||||||| ||||| |||||||| ||| | |||||
Sbjct 403 CGACGGTGAAGGTAACGCAGCTTGGAGGGTCAATAACTGTCACAAGACTTTCGAGTGCAA 462
Query 461 GAAACTTCCCATCAGTATAAGGTTTGACTTCGTGTTGAACTCTGAGATCAGAGACATATC 520
||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 463 GAAACTTCCCATCAGTATAAGGTTTGATTTCGTGACGAACGCTGAGATCAGAGACATATC 522
Query 521 CTCGATCGATGCAAAGAA-TTTCCACATCAACGTG-TTGGGAGCCAAGAACATGACCATG 578
||| |||||||| ||||| |||| ||||||||||| |||| ||||||||||||||| |
Sbjct 523 CTCAATCGATGCCAAGAACTTTC-ACATCAACGTGATTGGC-GCCAAGAACATGACCTTT 580
Query 579 GATAACATCAAGATCATCGCTCCAG-AGGAGAGTCCCAACACTGATGGGATCCATTTGGG 637
|| ||| |||||||||| ||||||| || |||| ||||||||||| |||||||| |||||
Sbjct 581 GACAACGTCAAGATCATGGCTCCAGCAG-AGAGCCCCAACACTGACGGGATCCACTTGGG 639
Query 638 AAGAAGTGACGGAGTCAAGATCCTTAACTCTTTCATCTCCACCGGAGACGATTGCATCTC 697
|||||||| ||| ||| || | |||||| |||||||||||||| || || ||||
Sbjct 640 AAGAAGTGTCGGGGTCTCCATTATCAACTCTAGGATCTCCACCGGAGATGACTGTGTCTC 699
Query 698 CGTTGGAGATGGGATGAAGAACCTTC-ACGTGGAGAAAGTTACATGCGGTCCAGGACACG 756
|| || || |||||| ||| |||| | || |||| || || ||||| |||||||
Sbjct 700 TGTCGGGGACGGGATGGTGAATCTTCTA-GTTAAGAACGTCGTGTGTGGTCCTGGACACG 758
Query 757 GAATCAGTGTCGGAAGCCTTGGAAGGTACGGACACGAGCAAGACGTCAGCGGCATTAAGA 816
| |||||||| ||||||||||||||||||||||| || || |||||||||||||||| |
Sbjct 759 GGATCAGTGTTGGAAGCCTTGGAAGGTACGGACATGAACAGGACGTCAGCGGCATTAGGG 818
Query 817 TCATCAACTGCACTCTCCAAGAGACTGACAACGGGTTGAGAATCAAGACATGGCCCTCTG 876
||||||| ||||| ||||| ||||||||||| || | || |||||||| ||||||||||
Sbjct 819 TCATCAATTGCACCCTCCAGGAGACTGACAATGGCCTCAGGATCAAGACTTGGCCCTCTG 878
Query 877 CAGCTTGCTCCACCACCGCCTCGGATATCCATTTCGAGGATATCATCGTCAAGAA-CGTT 935
|||||||||||||||| ||||| |||| ||||| ||| |||||||| | | ||| ||||
Sbjct 879 CAGCTTGCTCCACCACTGCCTCCAATATTCATTTTGAGAATATCATCCTTA-GAAACGTT 937
Query 936 AGCAACCCAATCCTCATCGACCAAGAGTACTGCCCTTGGAACCAATGCAACAAGCAAAAA 995
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 938 AGTAACCCAATCCTCATCGACCAAGAGTACTGTCCTTGGAACCAGTGCAACAAGCAGAAA 997
Query 996 GCATCAACAATTAAGTTGGTGAACATAAGCTTCAAGAATATCAGAGGAACATCAGGGAAC 1055
||||| | |||||| ||| ||||||||||||| || || ||||| ||||||||||||
Sbjct 998 TCATCATCCATTAAGCTGGCAAACATAAGCTTCAGGAGGATTAGAGGGACATCAGGGAAC 1057
Query 1056 AAGGACGCGGTGAAGCTACTT-TGCAGCAAGGGATATCCGTGCCAGAACGTGGAGATTGG 1114
|| ||||| ||||||||| || |||||||||||||||||||| ||||||| || ||||
Sbjct 1058 AAAGACGCAGTGAAGCTA-TTGTGCAGCAAGGGATATCCGTGTGAGAACGTTCAGGTTGG 1116
Query 1115 AGACATTGATATTAAGTACAATGGAGCCGATGGTCCAGCGACTTTCCAATGT--TCAAAT 1172
||||||| ||||| |||||| |||||||||||||||||| || ||| | ||| |||||
Sbjct 1117 AGACATTAATATTCAGTACACTGGAGCCGATGGTCCAGCCACCTTC-A-TGTGCTCAAAC 1174
Query 1173 GTCAGTCCCAAACTC-TTGGGATCTCAGAGCCCTAAAG 1209
|| || || || || |||| | ||||| ||| ||||
Sbjct 1175 GTAAGGCCTAAGCTAGTTGGAA-CTCAGTTCCC-AAAG 1210
> AT5G48140.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19518770-19520528 REVERSE LENGTH=1441
Length=1441
Score = 922 bits (499), Expect = 0.0
Identities = 941/1148 (82%), Gaps = 55/1148 (5%)
Strand=Plus/Plus
Query 96 TGTTTGTTGGGAATT-TCAGCCAATGCTGAGGTATTCACCATTGGTTCGTCAT-CAGGTT 153
|||||||| || || ||||| ||||| || | |||| ||| ||| || | ||||||
Sbjct 159 TGTTTGTTAGG-TTTATCAGCTAATGCAAAGATCTTCAATATTAATTC-TCCTCCAGGTT 216
Query 154 CTGATATTACTCAGGCCCTT-CTGAAAGCATTCACAT-CGGCATGCCAA-TCTTCGTCAC 210
||||||| ||| | | | || |||||||||||| || |||||||||| || || ||
Sbjct 217 CTGATATCACTAACG-CATTGTTGAAAGCATTCA-ATGAGGCATGCCAATTC-CCGACA- 272
Query 211 CA-AGCAAAGTGGTGATCCCAAAAGGAGAGTTCAAGCTTGGTGAGATCGAGATGAGGGGT 269
| |||| || ||||||||||||| || | ||||||||| ||||||| ||||| ||||
Sbjct 273 AAGAGCACCGTTATGATCCCAAAAGGTGAATACAAGCTTGGGGAGATCGTGATGATGGGT 332
Query 270 CCATGCAAAGCTCCCGT-TGAGG-TCACCCTTCAAGGTACTGTCAAAGCTGACGGTAACG 327
|||||||||||| || | | ||| | | |||| |||||| || ||||||||||||||||
Sbjct 333 CCATGCAAAGCT-CC-TATAAGGATTGCTCTTCTAGGTACCGTGAAAGCTGACGGTAACG 390
Query 328 CTATCCAAGGAAAGGAGAAATGGGTCGTC-TTCGGCAACATTGATGGCTTTAAGTTGAAC 386
||| | ||||||||||||||||||| | ||| |||||||| |||| ||||||||||||
Sbjct 391 CTA---ATGGAAAGGAGAAATGGGTCG-CTTTCCGCAACATTAATGGGTTTAAGTTGAAC 446
Query 387 GGAGGTGGAGCCTTCGACGGTGAAGGAAACTCTGCGTGGAGGGTCAACAACTGCCACAAG 446
|||||||| | |||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 447 GGAGGTGGTGTTTTCGACGGTGAAGGAAACGCAGCTTGGAGGGTCAACAACTGCCACAAG 506
Query 447 ACCTTCAACTGCAAGAAACTTCCCATCAGTATAAGGTTTGACTTCGT-GTTGAACTCTG- 504
|| |||||||||||||| || |||||||| || |||||||| ||||| | || | |
Sbjct 507 ACTTTCAACTGCAAGAAGCTCCCCATCAGCATTAGGTTTGATTTCGTCACCG-ACGC-GA 564
Query 505 AGATCAGAGACA-TATCCTCGATCGATGCAAAGAATTTCCACATCAACGT-GTTGGGAGC 562
| || |||| || || |||| | ||||||||| | |||||||| ||||| || |||||
Sbjct 565 AAATTAGAGGCATTA-CCTCCTTAGATGCAAAGCACTTCCACATTAACGTCATT-GGAGC 622
Query 563 CAAGAACATGACCA-TGGATA-ACATCAAGATCATCGCTCCAG-AGGAGAGTCCCAACAC 619
|||||| ||| || | || | || |||||||||| || || | | ||||||||||||||
Sbjct 623 AAAGAACGTGA-CATTCGA-AGACGTCAAGATCATTGCCCCTGCA-GAGAGTCCCAACAC 679
Query 620 TGATGGGATCCA-TTTGGGAAGAAGTGACGGAGTCAAGATCCTTAACTC-TTTCATCTCC 677
||||| ||||| || ||||||||||||||| |||||||| | || || ||| ||||||
Sbjct 680 CGATGGTATCCACGTT-GGAAGAAGTGACGGAATCAAGATCATCAATTCATTT-ATCTCC 737
Query 678 ACCGGAGACGATTGCATCTCCGTTGGAGATGGGATGAAGAACCTTCACGTGGAGAA-AGT 736
|| ||||| || || |||| ||||||||||||||||||||||||| || || || |||
Sbjct 738 ACAGGAGATGACTGTGTCTCTGTTGGAGATGGGATGAAGAACCTTCTTGTCGA-AAGAGT 796
Query 737 TACATGCGGTCCAGGACACGGAATCAGTGTCGGAAGCCTTGGAAGGTACGGACACGAGCA 796
|||||||||||| ||||| ||||||||| | ||||| |||||||||||| | |||||| |
Sbjct 797 TACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGAAGGTACAGCCACGAGGA 856
Query 797 AGACGTCAGCGGCATTAAGATCATCAACTGCACTCTCCAAGAGACTGACAACGGGT-TGA 855
| |||| || ||||| ||||||||||||||||||||||||||||||||||| || | | |
Sbjct 857 AAACGTTAGTGGCATCAAGATCATCAACTGCACTCTCCAAGAGACTGACAATGG-TCTAA 915
Query 856 GAATCAAGACATGGCCCTCTGCAGCTTGCT-CCACCACCGCCTCGGATATCCATTTCGAG 914
| |||||||||||||| ||||| ||||| | |||| |||||||| |||||||||||||||
Sbjct 916 GGATCAAGACATGGCCTTCTGCTGCTTG-TACCACAACCGCCTCCGATATCCATTTCGAG 974
Query 915 GATATCATCGTCAAGAACGTTAGCAACCCAATCCTCATCGACCAAGAGTACTGCCCTTGG 974
| ||| || |||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 975 AACATCCTCCTCAAGAACGTCAGCAACCCCATCCTCATCGACCAAGAGTACTGCCCATGG 1034
Query 975 AACCAATGCAACAAGCAAAAAGCATCAACAATTAAGTTGGTGAACATAAGCTTCAAGAAT 1034
||||||||||||||||| ||| ||||||| || ||||||| ||||| |||||||||||
Sbjct 1035 AACCAATGCAACAAGCAGAAACCATCAACGATCAAGTTGGCCAACATTAGCTTCAAGAAG 1094
Query 1035 ATCAGAGGAACATCAGGGAACAAGGACGCGGTGAAGCTACTT-TGCAGCAAGGGATATCC 1093
||||||||||||||||| ||||| ||||| |||||||| || || ||||||||||||||
Sbjct 1095 ATCAGAGGAACATCAGGAAACAAAGACGCAGTGAAGCTT-TTGTGTAGCAAGGGATATCC 1153
Query 1094 GTGCCAGAACGTGGAGATTGGAGACATTGAT-ATTAAGTACAATGGAGCCGATGGTCCAG 1152
|| |||||||| ||| |||| ||| | || || |||| | ||||| ||||||||||
Sbjct 1154 ATGTCAGAACGTTGAGGTTGGTGACGT-GAACATCCAGTATACCGGAGCAGATGGTCCAG 1212
Query 1153 CGACTTTCCAATGTTCAAATGTCAGTC-CCAAA-CTCT-TGGGATCTCAGAGCCCTAAAG 1209
||||||||||||| || || || | || ||||| || | ||||| |||||| || ||||
Sbjct 1213 CGACTTTCCAATGCTCTAACGT-A-TCACCAAAGCT-TGTGGGAACTCAGATTCCAAAAG 1269
Query 1210 CATGCAGC 1217
| || |||
Sbjct 1270 CGTGTAGC 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5