BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478122 Length=1675 Score E Sequences producing significant alignments: (Bits) Value AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein... 2398 0.0 AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein... 2311 0.0 > AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:2505547-2507528 REVERSE LENGTH=1691 Length=1691 Score = 2398 bits (1298), Expect = 0.0 Identities = 1563/1685 (93%), Gaps = 41/1685 (2%) Strand=Plus/Plus Query 5 AATaaacacaaa-aacaaaaagaaga-gaat-aaacaaaa-gaaaaaaaaaatcaataaa 60 |||||||| ||| || ||||| || | ||| |||||||| || ||||| | |||||| Sbjct 33 AATAAACA-AAAGAAGAAAAA-AA-ACTAATAAAACAAAATCAATAAAAAGA-GAATAAA 88 Query 61 aaaTGGTGGGTTTTCGA-AGAGCAAGCGGAGTGCTTCTAGTGCTTCTAGTGGTTATGGCC 119 |||||||||||| || | | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 89 AAATGGTGGGTTCTC-ACAAAGCAAGCGGAGTGCTTCTTGTGCTACTAGTGGTTATGGCC 147 Query 120 ACCACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCTGA-ATCAGT 178 ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 148 ACCACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCT-ACAGCAGT 206 Query 179 TGGTGATAAAGTCAGTGAA-GCAGCTACAACAGTTGGCGATAAAGCAAAAGATGCAGCTG 237 || |||| || || || ||||||||| |||||||| | | |||||||| Sbjct 207 TGAAGATACAG-CAAAAAATGCAGCTACAGCAGTTGGC------G-----G-TGCAGCTG 253 Query 238 CATCAGTTGGCGCTAAAGTACCAGGAGCCAAAGCAGGCGGTGCATCACTTGATGTTAAAG 297 |||||||||| ||||||||| |||| |||||| ||||| ||| || |||||||||||| Sbjct 254 CATCAGTTGGTGCTAAAGTATCAGGTGCCAAACCAGGC---GCAGCAGTTGATGTTAAAG 310 Query 298 CATCAGGAGCCAAAGGAGATGGCAAAACTGATGACAGTGCGGCATTTATGGCTGCATGGA 357 ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| Sbjct 311 CATCAGGAGCCAAAGGAGACAGCAAAACTGATGATAGTGCGGCATTTGCGGCTGCATGGA 370 Query 358 AAGAAGCGTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAGGTGAGTATTTGGTAGAGA 417 ||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||| Sbjct 371 AAGAAGCTTGTGCAGCAGGGAGCACAATTACAGTGCCAAAAGGTGAGTATATGGTAGAGA 430 Query 418 GCCTAGAGTTTAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATCTAA 477 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 431 GCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATTTCA 490 Query 478 AGGCTCCGGCTACGGTCAAGACCACTAAACCTCATGCCGGATGGATTGATTTCGAAAATC 537 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 491 AGGCTCCGGCTACGGTCAAGACCACTAAGCCACATGCCGGATGGATTGATTTCGAAAATA 550 Query 538 TCGCTGATTTCACTTTGAATGGAAACAAAGCTATATTTGACGGTCAAGGGTCCCTCGCTT 597 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 551 TAGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACGGTCAAGGGTCCCTCGCTT 610 Query 598 GGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCCATCAACATCCGAT 657 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 611 GGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCTATCAACATCCGAT 670 Query 658 TCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCAACAAACAGCAAACTTTTC 716 |||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| Sbjct 671 TCACTGGTCTAACAAACTC-AAAGATTAATAGTATTACATCAACAAACAGCAAACTTTTC 729 Query 717 CACATGAACATCCTTAACTGCAAAAACATAACTCTTGAGGATATTGGTATTGATGCACCT 776 ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| Sbjct 730 CACATGAACATCCTTAACTGCAAGAACATTACTCTTTCGGATATTGGTATTGATGCACCT 789 Query 777 CCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGCGTCAACTTAATA 836 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 790 CCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGAGTCAACTTAATT 849 Query 837 GGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTC 896 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 GGGGCAAAGATCAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTC 909 Query 897 ATTGTCGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAGA 956 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 ATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAGA 969 Query 957 TACCCTAACGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACACT 1016 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 970 TACCCTAATGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACACT 1029 Query 1017 GATAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACATT 1076 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1030 GACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGCATCGCCTCCAACATT 1089 Query 1077 CTTTTCGAAGATATCACAATGGACAATGTTAGCAC-CCCCGTTCTCATCGACCAAGAGTA 1135 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1090 CTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCGTTCTCATCGACCAAGAGTA 1148 Query 1136 CTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCGGACGTGAC 1195 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1149 CTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGCAAGTGAAGTTGTCAGACGTGAC 1208 Query 1196 TATCAAGAACATTAAGGGGACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCAA 1255 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 TATCAAGGGCATTAAGGGTACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCAA 1268 Query 1256 AGGAGTGCCTTGCACCAATATTGCTCTTTCTGACATCAACTTGGTCCACAACGGCAAAGA 1315 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1269 AGGAGTGCCTTGCACCAATATTGCTCTCTCTGACATCAACTTGGTCCACAACGGCAAAGA 1328 Query 1316 GGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCTCCGGCAAGTTGGTTCC 1375 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1329 GGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCAGCGGAAAGTTGGTTCC 1388 Query 1376 AGCAGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAATTAAAGTCGCTTGTCCACCATA 1435 ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1389 AGCGGCTTGCACTGAAGTTGCTAAACCGGGTCCATAAATTAAAGTCGCTTGTCCACCATA 1448 Query 1436 AATCCATCCAATCTCGTGAAGACGCTTTGATTAGGGTGCGATaaaaaaaGTTTTGCAATA 1495 |||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1449 AATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGTGCGATGAAAAAA-TTTTGCAATA 1507 Query 1496 tttttttGACATATAAAATATATGGATATTT-AGTAGATAAAACGGAGTCCCTTCAGGCT 1554 ||||||||||||||||| ||||||||||||| | ||||||| ||||||||| |||||| | Sbjct 1508 TTTTTTTGACATATAAATTATATGGATATTTTA-TAGATAAGACGGAGTCCATTCAGGAT 1566 Query 1555 TGGAGTTTATCACCTGAAGAGTGACTCGTGA-TTGGGTAGTAATCGTTGTGTGC-TTCGC 1612 |||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||| Sbjct 1567 TGGAGTTTATAACCTGAAGAGTGACTCGTGAATTGGGTAGTAATTGTTGTGTGGATTCGC 1626 Query 1613 AAT-ATGCGAGAGTGTTTTAATAATTATTCAATAAA-TAATAATATCATTGAAATTTTTA 1670 | | |||||||| ||||||||||||||||| | ||| ||||||||||||||||||||| | Sbjct 1627 ATTTATGCGAGAATGTTTTAATAATTATTCGA-AAAGTAATAATATCATTGAAATTTTGA 1685 Query 1671 AGTTT 1675 ||||| Sbjct 1686 AGTTT 1690 > AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:4648348-4650319 REVERSE LENGTH=1690 Length=1690 Score = 2311 bits (1251), Expect = 0.0 Identities = 1514/1634 (93%), Gaps = 45/1634 (3%) Strand=Plus/Plus Query 5 AATaaacacaaa-aacaaaaagaagag-aat-aaacaaaa-gaaaaaaaaaatcaataaa 60 |||||||| ||| || ||||| || || | | |||||||| || ||||| | |||||| Sbjct 35 AATAAACA-AAAGAAGAAAAA-AAAAGTATTAAAACAAAATCAATAAAAAGA-GAATAAA 91 Query 61 aaaTGGTGGGTTTTCGA-AGAGCAAGCGGAGTGCTTCTAGTGCTTCTAGTGGTTATGGCC 119 |||||||||||| || | | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 92 AAATGGTGGGTTCTC-ACAAAGCAAGCGGAGTGCTTCTTGTGCTACTAGTGGTTATGGCC 150 Query 120 ACCACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCTGA-ATCAGT 178 ||||||||||||||||||||||| |||||||||| |||||||||||||||| | | |||| Sbjct 151 ACCACAATAGCAAACGGGACACCTGTTGTCGATACAGCAAAAAATGCAGCT-ACAGCAGT 209 Query 179 TGGTGATAAAGTCAGTGAA-GCAGCTACAACAGTTGGCGATAAAGCAAAAGATGCAGCTG 237 || |||| || || || ||||||||| |||||||| | | |||||||| Sbjct 210 TGAAGATACAG-CAAAAAATGCAGCTACAGCAGTTGGC------G-----G-TGCAGCTG 256 Query 238 CATCAGTTGGCGCTAAAGTACCAGGAGCCAAAGCAGGCGGTGCATCACTTGATGTTAAAG 297 |||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||| Sbjct 257 CATCAGTTGGTGCTAAAGTAACAGGTGCCAAACCAGGCGGTGCATCACTTGATGTTAAAG 316 Query 298 CATCAGGAGCCAAAGGAGATGGCAAAACTGATGACAGTGCGGCATTTATGGCTGCATGGA 357 ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 317 CATCAGGAGCCAAAGGAGACGGCAAAACTGATGATAGTGCGGCATTTGCGGCTGCATGGA 376 Query 358 AAGAAGCGTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAGGTGAGTATTTGGTAGAGA 417 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 377 AAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCAAAAGGTGAGTATTTGGTAGAGA 436 Query 418 GCCTAGAGTTTAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATCTAA 477 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 437 GCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATTTTA 496 Query 478 AGGCTCCGGCTACGGTCAAGACCACTAAACCTCATGCCGGATGGATTGATTTCGAAAATC 537 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 497 AGGCTCCGGCTACGGTCAAGACCACTAAGCCTCATGCCGGATGGATTGATTTCGAAAATC 556 Query 538 TCGCTGATTTCACTTTGAATGGAAACAAAGCTATATTTGACGGTCAAGGGTCCCTCGCTT 597 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 557 TCGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACGGTCAAGGGTCCCTCGCTT 616 Query 598 GGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCCATCAACATCCGAT 657 ||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 617 GGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTCTCCCTATCAACATCCGAT 676 Query 658 TCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCAACAAACAGCAAACTTTTC 716 |||| |||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct 677 TCACTGGTCTAACAAACTC-AAAGATTAACAGTATTACATCAACAAACAGCAAGCTTTTC 735 Query 717 CACATGAACATCCTTAACTGCAAAAACATAACTCTTGA-GGATATTGGTATTGATGCACC 775 ||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||| Sbjct 736 CACATGAACATCCTTAACTGCAAGAACATAACTCTT-ACGGATATCGGTATTGATGCACC 794 Query 776 TCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGCGTCAACTTAAT 835 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 795 TCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGAGTCAACTTAAT 854 Query 836 AGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCT 895 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 TGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCT 914 Query 896 CATTGTCGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAG 955 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 CATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAG 974 Query 956 ATACCCTAACGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACAC 1015 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 975 ATACCCTAATGAACAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACAC 1034 Query 1016 TGATAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACAT 1075 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 TGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACAT 1094 Query 1076 TCTTTTCGAAGATATCACAATGGACAATGTTAGCACC-CCCGTTCTCATCGACCAAGAGT 1134 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1095 TCTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCGTTCTCATCGACCAAGAGT 1153 Query 1135 ACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCGGACGTGA 1194 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1154 ACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCAGACGTGA 1213 Query 1195 CTATCAAGAACATTAAGGGGACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCA 1254 ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 1214 CTATCAAGAACATTAAGGGAACATCAGCAACAAAGGTAGCAGTGAAGCTAATGTGCAGCA 1273 Query 1255 AAGGAGTGCCTTGCACCAATATTGCTCTTTCTGACATCAACTTGGTCCACAACGGCAAAG 1314 |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1274 AAGGCGTTCCTTGCACCAATATTGCTCTCTCTGACATCAACTTGGTCCACAACGGCAAAG 1333 Query 1315 AGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCTCCGGCAAGTTGGTTC 1374 |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1334 AGGGACCAGCTGTCTCAGCATGTTCTAACATCAAGCCTATTCTCAGCGGAAAGTTGGTTC 1393 Query 1375 CAGCAGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAATTAAAGTCGCTTGTCCACCAT 1434 |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1394 CAGCGGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAATTAAAGTTGCATGTCCACCAT 1453 Query 1435 AAATCCATCCAATCTCGTGAAGACGCTTTGATTAGGGTGCGATaaaaaaaGTTTTGCAAT 1494 ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1454 AAATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGTGCGATGAAAAA--TTTTGCAAT 1511 Query 1495 Attttttt-GACATATAAAATATATGGATATTTAGTAGATAAAACGGAGTCCCTTCAGGC 1553 |||||||| || ||||||| | ||| ||| | |||||||||| |||||| |||||| Sbjct 1512 ATTTTTTTTGAGATATAAA-T-TAT--ATA---A-TAGATAAAACAGAGTCCATTCAGGG 1563 Query 1554 TTGGAGTTTATCACCTGAAGAGTGACTCGTG--ATTGGGTAGTAATCGTTGTGTGCTTCG 1611 ||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||| |||| Sbjct 1564 TTGGAGTTTATCACCTGAAGAGTGACTTGTGTGATTGGGTAGTAAT-GTTATGTGATTCG 1622 Query 1612 CAATATGCGAGAGT 1625 |||||||||||||| Sbjct 1623 CAATATGCGAGAGT 1636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82780698705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5