BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478122
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein... 2398 0.0
AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein... 2311 0.0
> AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2505547-2507528 REVERSE LENGTH=1691
Length=1691
Score = 2398 bits (1298), Expect = 0.0
Identities = 1563/1685 (93%), Gaps = 41/1685 (2%)
Strand=Plus/Plus
Query 5 AATaaacacaaa-aacaaaaagaaga-gaat-aaacaaaa-gaaaaaaaaaatcaataaa 60
|||||||| ||| || ||||| || | ||| |||||||| || ||||| | ||||||
Sbjct 33 AATAAACA-AAAGAAGAAAAA-AA-ACTAATAAAACAAAATCAATAAAAAGA-GAATAAA 88
Query 61 aaaTGGTGGGTTTTCGA-AGAGCAAGCGGAGTGCTTCTAGTGCTTCTAGTGGTTATGGCC 119
|||||||||||| || | | |||||||||||||||||| ||||| |||||||||||||||
Sbjct 89 AAATGGTGGGTTCTC-ACAAAGCAAGCGGAGTGCTTCTTGTGCTACTAGTGGTTATGGCC 147
Query 120 ACCACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCTGA-ATCAGT 178
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 148 ACCACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCT-ACAGCAGT 206
Query 179 TGGTGATAAAGTCAGTGAA-GCAGCTACAACAGTTGGCGATAAAGCAAAAGATGCAGCTG 237
|| |||| || || || ||||||||| |||||||| | | ||||||||
Sbjct 207 TGAAGATACAG-CAAAAAATGCAGCTACAGCAGTTGGC------G-----G-TGCAGCTG 253
Query 238 CATCAGTTGGCGCTAAAGTACCAGGAGCCAAAGCAGGCGGTGCATCACTTGATGTTAAAG 297
|||||||||| ||||||||| |||| |||||| ||||| ||| || ||||||||||||
Sbjct 254 CATCAGTTGGTGCTAAAGTATCAGGTGCCAAACCAGGC---GCAGCAGTTGATGTTAAAG 310
Query 298 CATCAGGAGCCAAAGGAGATGGCAAAACTGATGACAGTGCGGCATTTATGGCTGCATGGA 357
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 311 CATCAGGAGCCAAAGGAGACAGCAAAACTGATGATAGTGCGGCATTTGCGGCTGCATGGA 370
Query 358 AAGAAGCGTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAGGTGAGTATTTGGTAGAGA 417
||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 371 AAGAAGCTTGTGCAGCAGGGAGCACAATTACAGTGCCAAAAGGTGAGTATATGGTAGAGA 430
Query 418 GCCTAGAGTTTAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATCTAA 477
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 431 GCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATTTCA 490
Query 478 AGGCTCCGGCTACGGTCAAGACCACTAAACCTCATGCCGGATGGATTGATTTCGAAAATC 537
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 491 AGGCTCCGGCTACGGTCAAGACCACTAAGCCACATGCCGGATGGATTGATTTCGAAAATA 550
Query 538 TCGCTGATTTCACTTTGAATGGAAACAAAGCTATATTTGACGGTCAAGGGTCCCTCGCTT 597
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 551 TAGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACGGTCAAGGGTCCCTCGCTT 610
Query 598 GGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCCATCAACATCCGAT 657
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 611 GGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCTATCAACATCCGAT 670
Query 658 TCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCAACAAACAGCAAACTTTTC 716
|||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 671 TCACTGGTCTAACAAACTC-AAAGATTAATAGTATTACATCAACAAACAGCAAACTTTTC 729
Query 717 CACATGAACATCCTTAACTGCAAAAACATAACTCTTGAGGATATTGGTATTGATGCACCT 776
||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 730 CACATGAACATCCTTAACTGCAAGAACATTACTCTTTCGGATATTGGTATTGATGCACCT 789
Query 777 CCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGCGTCAACTTAATA 836
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 790 CCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGAGTCAACTTAATT 849
Query 837 GGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTC 896
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGGGCAAAGATCAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCTC 909
Query 897 ATTGTCGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAGA 956
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAGA 969
Query 957 TACCCTAACGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACACT 1016
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TACCCTAATGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACACT 1029
Query 1017 GATAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACATT 1076
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1030 GACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGCATCGCCTCCAACATT 1089
Query 1077 CTTTTCGAAGATATCACAATGGACAATGTTAGCAC-CCCCGTTCTCATCGACCAAGAGTA 1135
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1090 CTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCGTTCTCATCGACCAAGAGTA 1148
Query 1136 CTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCGGACGTGAC 1195
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1149 CTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGCAAGTGAAGTTGTCAGACGTGAC 1208
Query 1196 TATCAAGAACATTAAGGGGACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCAA 1255
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TATCAAGGGCATTAAGGGTACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCAA 1268
Query 1256 AGGAGTGCCTTGCACCAATATTGCTCTTTCTGACATCAACTTGGTCCACAACGGCAAAGA 1315
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1269 AGGAGTGCCTTGCACCAATATTGCTCTCTCTGACATCAACTTGGTCCACAACGGCAAAGA 1328
Query 1316 GGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCTCCGGCAAGTTGGTTCC 1375
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1329 GGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCAGCGGAAAGTTGGTTCC 1388
Query 1376 AGCAGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAATTAAAGTCGCTTGTCCACCATA 1435
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1389 AGCGGCTTGCACTGAAGTTGCTAAACCGGGTCCATAAATTAAAGTCGCTTGTCCACCATA 1448
Query 1436 AATCCATCCAATCTCGTGAAGACGCTTTGATTAGGGTGCGATaaaaaaaGTTTTGCAATA 1495
|||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1449 AATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGTGCGATGAAAAAA-TTTTGCAATA 1507
Query 1496 tttttttGACATATAAAATATATGGATATTT-AGTAGATAAAACGGAGTCCCTTCAGGCT 1554
||||||||||||||||| ||||||||||||| | ||||||| ||||||||| |||||| |
Sbjct 1508 TTTTTTTGACATATAAATTATATGGATATTTTA-TAGATAAGACGGAGTCCATTCAGGAT 1566
Query 1555 TGGAGTTTATCACCTGAAGAGTGACTCGTGA-TTGGGTAGTAATCGTTGTGTGC-TTCGC 1612
|||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 1567 TGGAGTTTATAACCTGAAGAGTGACTCGTGAATTGGGTAGTAATTGTTGTGTGGATTCGC 1626
Query 1613 AAT-ATGCGAGAGTGTTTTAATAATTATTCAATAAA-TAATAATATCATTGAAATTTTTA 1670
| | |||||||| ||||||||||||||||| | ||| ||||||||||||||||||||| |
Sbjct 1627 ATTTATGCGAGAATGTTTTAATAATTATTCGA-AAAGTAATAATATCATTGAAATTTTGA 1685
Query 1671 AGTTT 1675
|||||
Sbjct 1686 AGTTT 1690
> AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:4648348-4650319 REVERSE LENGTH=1690
Length=1690
Score = 2311 bits (1251), Expect = 0.0
Identities = 1514/1634 (93%), Gaps = 45/1634 (3%)
Strand=Plus/Plus
Query 5 AATaaacacaaa-aacaaaaagaagag-aat-aaacaaaa-gaaaaaaaaaatcaataaa 60
|||||||| ||| || ||||| || || | | |||||||| || ||||| | ||||||
Sbjct 35 AATAAACA-AAAGAAGAAAAA-AAAAGTATTAAAACAAAATCAATAAAAAGA-GAATAAA 91
Query 61 aaaTGGTGGGTTTTCGA-AGAGCAAGCGGAGTGCTTCTAGTGCTTCTAGTGGTTATGGCC 119
|||||||||||| || | | |||||||||||||||||| ||||| |||||||||||||||
Sbjct 92 AAATGGTGGGTTCTC-ACAAAGCAAGCGGAGTGCTTCTTGTGCTACTAGTGGTTATGGCC 150
Query 120 ACCACAATAGCAAACGGGACACCGGTTGTCGATAAAGCAAAAAATGCAGCTGA-ATCAGT 178
||||||||||||||||||||||| |||||||||| |||||||||||||||| | | ||||
Sbjct 151 ACCACAATAGCAAACGGGACACCTGTTGTCGATACAGCAAAAAATGCAGCT-ACAGCAGT 209
Query 179 TGGTGATAAAGTCAGTGAA-GCAGCTACAACAGTTGGCGATAAAGCAAAAGATGCAGCTG 237
|| |||| || || || ||||||||| |||||||| | | ||||||||
Sbjct 210 TGAAGATACAG-CAAAAAATGCAGCTACAGCAGTTGGC------G-----G-TGCAGCTG 256
Query 238 CATCAGTTGGCGCTAAAGTACCAGGAGCCAAAGCAGGCGGTGCATCACTTGATGTTAAAG 297
|||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||
Sbjct 257 CATCAGTTGGTGCTAAAGTAACAGGTGCCAAACCAGGCGGTGCATCACTTGATGTTAAAG 316
Query 298 CATCAGGAGCCAAAGGAGATGGCAAAACTGATGACAGTGCGGCATTTATGGCTGCATGGA 357
||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 317 CATCAGGAGCCAAAGGAGACGGCAAAACTGATGATAGTGCGGCATTTGCGGCTGCATGGA 376
Query 358 AAGAAGCGTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAGGTGAGTATTTGGTAGAGA 417
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 377 AAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCAAAAGGTGAGTATTTGGTAGAGA 436
Query 418 GCCTAGAGTTTAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATCTAA 477
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 437 GCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGAATTGAATGGCAATTTTA 496
Query 478 AGGCTCCGGCTACGGTCAAGACCACTAAACCTCATGCCGGATGGATTGATTTCGAAAATC 537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 497 AGGCTCCGGCTACGGTCAAGACCACTAAGCCTCATGCCGGATGGATTGATTTCGAAAATC 556
Query 538 TCGCTGATTTCACTTTGAATGGAAACAAAGCTATATTTGACGGTCAAGGGTCCCTCGCTT 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 557 TCGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACGGTCAAGGGTCCCTCGCTT 616
Query 598 GGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTCTCCCCATCAACATCCGAT 657
||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 617 GGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTCTCCCTATCAACATCCGAT 676
Query 658 TCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCAACAAACAGCAAACTTTTC 716
|||| |||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 677 TCACTGGTCTAACAAACTC-AAAGATTAACAGTATTACATCAACAAACAGCAAGCTTTTC 735
Query 717 CACATGAACATCCTTAACTGCAAAAACATAACTCTTGA-GGATATTGGTATTGATGCACC 775
||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||
Sbjct 736 CACATGAACATCCTTAACTGCAAGAACATAACTCTT-ACGGATATCGGTATTGATGCACC 794
Query 776 TCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGCGTCAACTTAAT 835
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 795 TCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCCAATGGAGTCAACTTAAT 854
Query 836 AGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCT 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGGAGATGGTACCGAAAATCT 914
Query 896 CATTGTCGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAG 955
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTCCATTGGAAGTCTTGGAAG 974
Query 956 ATACCCTAACGAGCAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACAC 1015
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 ATACCCTAATGAACAACCAGTAAAAGGAGTCACCGTGAGGAAATGCCTCATCAAGAACAC 1034
Query 1016 TGATAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACAT 1075
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCCCGGTATCGCCTCCAACAT 1094
Query 1076 TCTTTTCGAAGATATCACAATGGACAATGTTAGCACC-CCCGTTCTCATCGACCAAGAGT 1134
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1095 TCTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCGTTCTCATCGACCAAGAGT 1153
Query 1135 ACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCGGACGTGA 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1154 ACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAGTGAAGTTGTCAGACGTGA 1213
Query 1195 CTATCAAGAACATTAAGGGGACATCAGCAACAAAGGTGGCTGTGAAGCTAATGTGCAGCA 1254
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 1214 CTATCAAGAACATTAAGGGAACATCAGCAACAAAGGTAGCAGTGAAGCTAATGTGCAGCA 1273
Query 1255 AAGGAGTGCCTTGCACCAATATTGCTCTTTCTGACATCAACTTGGTCCACAACGGCAAAG 1314
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1274 AAGGCGTTCCTTGCACCAATATTGCTCTCTCTGACATCAACTTGGTCCACAACGGCAAAG 1333
Query 1315 AGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTCTCTCCGGCAAGTTGGTTC 1374
|||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1334 AGGGACCAGCTGTCTCAGCATGTTCTAACATCAAGCCTATTCTCAGCGGAAAGTTGGTTC 1393
Query 1375 CAGCAGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAATTAAAGTCGCTTGTCCACCAT 1434
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1394 CAGCGGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAATTAAAGTTGCATGTCCACCAT 1453
Query 1435 AAATCCATCCAATCTCGTGAAGACGCTTTGATTAGGGTGCGATaaaaaaaGTTTTGCAAT 1494
||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1454 AAATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGTGCGATGAAAAA--TTTTGCAAT 1511
Query 1495 Attttttt-GACATATAAAATATATGGATATTTAGTAGATAAAACGGAGTCCCTTCAGGC 1553
|||||||| || ||||||| | ||| ||| | |||||||||| |||||| ||||||
Sbjct 1512 ATTTTTTTTGAGATATAAA-T-TAT--ATA---A-TAGATAAAACAGAGTCCATTCAGGG 1563
Query 1554 TTGGAGTTTATCACCTGAAGAGTGACTCGTG--ATTGGGTAGTAATCGTTGTGTGCTTCG 1611
||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||| ||||
Sbjct 1564 TTGGAGTTTATCACCTGAAGAGTGACTTGTGTGATTGGGTAGTAAT-GTTATGTGATTCG 1622
Query 1612 CAATATGCGAGAGT 1625
||||||||||||||
Sbjct 1623 CAATATGCGAGAGT 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5