BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478124
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07860.1 | Symbols: | Ubiquitin-like superfamily protein | ... 955 0.0
> AT3G07860.1 | Symbols: | Ubiquitin-like superfamily protein
| chr3:2507880-2509509 FORWARD LENGTH=884
Length=884
Score = 955 bits (517), Expect = 0.0
Identities = 604/645 (94%), Gaps = 10/645 (2%)
Strand=Plus/Plus
Query 1 CCTAAACCCTAGGGAATGGAGAGCGGCGATTACGACGTTGAGACGAAAAGAGAGAAGCTT 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CCTAAACCCTACGGAATGGAGAGCGGCGATTACGATGTTGAGACGAAAAGAGAGAAGCTT 60
Query 61 AAATCGGTTCTCTCTCATCTCCTCGCCGATCCGATTCTCGCCGACGTTCCGAGGAATCCA 120
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 AAATCGGTTCTCTCTCAGCTCCTTGCTGATCCGATTCTCGCCGACGTTCCGAGGAATCCA 120
Query 121 ACACTCTCTGATGTCGTCACTCTTGTCAGTCTTGAAAAGGGAAGCGCTATGCGTCTCTCC 180
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 121 ACACTTTCTGATGTCGTCACTCTTGTCAGCCTTGAGAAGGGAAGCGCTATGCGTCTCTCC 180
Query 181 GTCGTCAAGCTCGACGGCTCCTCCCTGGATGTGGCGGTCATGAATTCAGCTACTTTGAAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GTCGTCAAGCTCGACGGCTCCTCCCTTGATGTGGCGGTCATGAATTCAGCTACTTTGAAA 240
Query 241 GATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAACGGAGCAAGCAAACATGGGTCAT 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAATGGAGCAAGCAAACATGGGTCAT 300
Query 301 CGCCACATTTCTTGGAAACATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAG 360
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCCATATTTCTTGGAAGCATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAG 360
Query 361 TTGCTTGACGATAATGCTCTTCTTCAAGATGTAGGAATCCGGAACAATTCTCAGGTGACC 420
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 361 TTGCTTGACGATAATGCTGTTCTTCAGGATGTTGGAATCCGGAACAATTCTCAGGTGACT 420
Query 421 TTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCAAAGAGGAAGAAGCATCGT 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAGCATCGT 480
Query 481 CTCTTTCGTTCACTCCACAAGACTTCTTCTTGAATCCTTTT-ATA-TGTTGGTA--AGTT 536
||||||||||| |||||||||||||||||||||| |||||| ||| | ||||| |||
Sbjct 481 CTCTTTCGTTCTCTCCACAAGACTTCTTCTTGAAGCCTTTTTATAAT-TTGGTTGGAGTG 539
Query 537 GACAGTCGTCTCGTCTCAGCATGGATGAAATCAAA-CTAATAGATTACGTCTGTGGTT-A 594
|||| ||| ||||||||| ||||||||||||| |||| ||||| ||||||||||| |
Sbjct 540 GACAAA-GTC--GTCTCAGCACGGATGAAATCAAAACTAACAGATTCCGTCTGTGGTTTA 596
Query 595 TTGCACCTTAGAATTCACCAGCAGCACAACACGCAGCAGAAACTA 639
| |||||| |||| |||||||||||||||||||||||| |||||
Sbjct 597 TCCCACCTTGGAATACACCAGCAGCACAACACGCAGCAGCAACTA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5