BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478129
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07900.1 | Symbols: | O-fucosyltransferase family protein |... 2843 0.0
> AT3G07900.1 | Symbols: | O-fucosyltransferase family protein
| chr3:2520774-2523108 FORWARD LENGTH=1892
Length=1892
Score = 2843 bits (1539), Expect = 0.0
Identities = 1733/1823 (95%), Gaps = 28/1823 (2%)
Strand=Plus/Plus
Query 1 GCCGTAACTAATTTTCTCAAAAATCTCTCATTTCGTCTGTTTGAAAGTTGTGATGGGAAC 60
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GCCGTAACTAATTGTCTCCAAAATCTCTCATTTCGTCTGTTTAAAAGTTGTGATGGGAAC 60
Query 61 ATGGAAG-ACGAAAAACAGTAATAAGAAGAAGAAAGTTAGCTACATTTCAGTCCCAGCTC 119
||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 61 ATGGAAGAAC-AAAAACAGTAATAAGAAGAACAGAGTTAGCTACATTTCAGTCCCAGCTC 119
Query 120 AGATCATAAACTCAGTTTCATCATCATCTTTACA-AAGTTTTCTCGATAACAAATCTTC- 177
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 120 AGATCATAAACTCAGTTTCATCATCATCTTTACACAA-ATTTCTCGATAATAAATCTTCA 178
Query 178 ---AAG----C-A--AA-TTCTTCTTCAATCTCAGAAACCCAAAGCTCTGGGCTTTCTCT 226
||| | | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGAAGAACACAAGCAAGTTCTTCTTCAATCTCAGAAACCCAAAGCTCTGGGCTTTCTCT 238
Query 227 CTCTTCTTACTTTCTATTTTGGGAATATCATTAAGACTCGGTCTTTGTC-TT-TC--TTC 282
||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||
Sbjct 239 CTCTTCTTACTTTCTATTTTGGGGATATCATTAAGACTCGGTCTTTGTCTTTCTCATTTC 298
Query 283 ----C-GGCGTTCACGAAAGTCAACTTCAGAGCTCGGATTCTAATGGGTCACCCAAATCC 337
| |||| ||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 299 GGTTCTGGCGATCACGAAAGTCAACTTCAGAGTTCAGATTCTAATGGCTCGCCCAAATCC 358
Query 338 CATCTGGGTTTTGCGTATAGCCGATCAAACACCACTCAAGTTGAGATTTCGAACGCCAAG 397
||| ||||||||||||||| |||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 359 CATATGGGTTTTGCGTATATCCGATCAAGCACTACTCAAGTTGAGATTTCAAACGCAAAG 418
Query 398 GATCGATCTTTAGATACGGGTGTGGAGAAAAATGAAACCTTTGGTGGTGATCAGTCACAT 457
|||||||||||||||| ||| ||||||||||||||||||||||||||| | || ||||||
Sbjct 419 GATCGATCTTTAGATATGGGAGTGGAGAAAAATGAAACCTTTGGTGGTCACCAATCACAT 478
Query 458 TTGATCA-CCTCTAGTGGAAATGTACATGATGATAAGAATTATGAGTTCTGGAAACAGCC 516
||||||| || ||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 479 TTGATCATCC-CTAATGGAAATGGACATGATGATAAGAATTATGACTTCTGGAAACAGCC 537
Query 517 TGATGGATTAGGTTACAAGCCATGCTTAGATTTCAGCATTGAATACAGAAGAGAGAGTAA 576
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGATGGATTAGGTTACAAGCCTTGCTTAGATTTCAGCATTGAATACAGAAGAGAGAGTAA 597
Query 577 GAAGATTGTTGCAGAGAGGAGAAAGTATCTGATGGTGGTAGTTTCTGGTGGGTTGAATCA 636
||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 598 GAAGATTCTTGTAGAGAGGAGAAAGTATCTGATGGTGGTTGTCTCTGGTGGGTTGAATCA 657
Query 637 GCAGAAGATTCAGATTGTTGATGCAGTTGTGATTGCGAGGATTCTAGGTGCTGTTCTTGT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCAGAAGATTCAGATTGTTGATGCAGTTGTGATTGCGAGGATTCTAGGTGCTGTTCTTGT 717
Query 697 TGTCCCAATATTGCAAATCAATCTCATTTGGGGTGACGAGAGTGAGTTTTCAGATATTTT 756
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 718 TGTCCCAATATTGCAAATCAATCTCATTTGGGGTGACGAGAGCGAGTTTTCAGATATATT 777
Query 757 TGATTTAGAGCAATTCAAGAGTGTTTTAGTAAATGATGTGAAGATTGTTTCGTTGCTTCC 816
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 TGATTTAGAGCAATTCAAGAGTGTTTTAGCAAATGATGTGAAGATTGTTTCGTTGCTTCC 837
Query 817 CGCAAGTAAAGTAATGACTAGACCATCAGAAGATGGTAGTATGCCCTTTAATGCCTCCCC 876
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 CGCAAGTAAAGTAATGACTAGACCATCGGAAGATGGTAGTATGCCCTTTAATGCCTCCCC 897
Query 877 TCAATGGATCCGTTCGCACTATCTAAAGCGTTTCAATAGGGAAGGAGTTCTGCTTTTAAG 936
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 898 TCAATGGATCCGTTCGCACTATCCAAAGCGTTTCAATAGGGAAGGTGTTCTGCTTTTAAG 957
Query 937 GAGATTTGATTCAAGATTGTCTAAAGACTTACCCTCTGATCTCCAGAAGCTCCGTTGTAA 996
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAGATTGGATTCAAGATTGTCTAAAGACTTACCCTCTGATCTCCAGAAGCTCCGTTGTAA 1017
Query 997 GGTAGCATTTGAAGCACTAAAATTTTCGCCACGGGTTTTGGATATGGGGACGAAGCTTGC 1056
||||||||||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||
Sbjct 1018 GGTAGCATTTGAAGCTCTAAAGTTTTCGCCACGAGTTATGGAAATGGGGACGAAGCTTGC 1077
Query 1057 AGAGAGGATGAGGAGCAAAGGACCTTACATTGCGTTGCATCTTCGGATGGAGAAAGATGT 1116
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGAGAGGATGAGGAGCAAAGGGCCTTACATTGCGTTGCATCTTCGGATGGAGAAAGATGT 1137
Query 1117 GTGGGTGAGAACAGGCTGCCTTTCTGGTTTGAGCTCAAAGTATGATGAGATTGTTAACAT 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 GTGGGTGAGAACAGGCTGCCTTTCTGGTTTGAGCTCAAAGTATGATGAGATTGTGAACAT 1197
Query 1177 TGAAAGGATTAAGCGGCCTGAGCTCTTAACAGCCAAATCTAGTATGACATCTAACGAGAG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGAAAGGATTAAGCGGCCTGAGCTCTTAACAGCCAAATCTAGTATGACATCTAACGAGAG 1257
Query 1237 GAAACTCGCGGGTCTCTGTCCATTAAATGCCAAGGAAGTAACAAGACTGCTTAGAGCTCT 1296
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1258 AAAACTCGCGGGTCTCTGTCCGTTAAATGCCAAGGAAGTAACAAGGCTGCTTAGAGCTCT 1317
Query 1297 TGGAGCACCAAGAGATGCGAGGATCTATTGGGCGGGAGGTGAACCGCTTGGCGGAAAGGA 1356
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1318 TGGAGCACCAAGAGATGCGAGGATCTATTGGGCGGGAGGGGAACCGCTCGGTGGAAAGGA 1377
Query 1357 AGCTTTGAAACCGTTAACAAGTGAATTCCCACATCTCTACAACAAATATGATATTGCGTT 1416
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1378 AGCTTTGAAACCGTTAACAAGTGAATTCCCACATCTCTACAACAAGTACGATATTGCGTT 1437
Query 1417 GCCTCTTGAACTCAAACCTTTCGCAAAACGAGCTTCGATAATGGCAGCAATCGACTATAT 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GCCTCTTGAACTCAAACCTTTCGCAAAACGAGCTTCGATAATGGCAGCAATCGACTATAT 1497
Query 1477 AGTGTGTAAGGAGAGTGATGTGTTTATGGCATCTCATGGAGGGAACATGGGCCACGCAAT 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGTGTGTAAGGAGAGTGATGTGTTTATGGCATCTCATGGAGGGAACATGGGCCACGCAAT 1557
Query 1537 TCAGGGGCACAGGGCTTATGAAGGACACAAGAAGATTATAACACCAAACAAAAGGCATAT 1596
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1558 TCAGGGGCACAGGGCTTATGAAGGACACAAGAAGATTATAACGCCAAACAAAAGACATAT 1617
Query 1597 GCTCCCATACTTTGTGAACTCATCAATGACTAAAACAGAGTTTGAGAAGATGATAAAGAA 1656
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1618 GCTACCATACTTTGTGAACTCATCATTGACTGAAACAGAGTTTGAGAAGATGATAAAGAA 1677
Query 1657 ATTACACAGACAATCTCTAGGACAGCCAGAACTAAGGATTAGCAAAGCTGGAAGAGATGT 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATTACACAGACAATCTCTAGGACAGCCAGAACTAAGGATTAGCAAAGCTGGAAGAGATGT 1737
Query 1717 TACAAAGTATCCTGTTCCTGAGTGTATGTGCAATCAATCCAACACCACTATTTAGAGCTT 1776
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1738 TACAAAGTACCCTGTTCCTGAGTGTATGTGCAATCAATCCAACACCACTATTTAGAACTT 1797
Query 1777 Ctt-ttttttGAACATATGGTTT 1798
||| ||||||| |||||||||||
Sbjct 1798 CTTCTTTTTTGCACATATGGTTT 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5