BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478135 Length=1550 Score E Sequences producing significant alignments: (Bits) Value AT3G07940.1 | Symbols: | Calcium-dependent ARF-type GTPase act... 2538 0.0 > AT3G07940.1 | Symbols: | Calcium-dependent ARF-type GTPase activating protein family | chr3:2529204-2531533 FORWARD LENGTH=1561 Length=1561 Score = 2538 bits (1374), Expect = 0.0 Identities = 1501/1561 (96%), Gaps = 14/1561 (1%) Strand=Plus/Plus Query 1 aaaaaa-aaaaTTCAACTGATCTTTAGAGTTTTTAGGTTCTTCCAAGAAATTGAATTTGG 59 |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 2 AAAAAATAAAATTCAACTCATCTCTAGAGTTTTTAGGTTCTTCCAAGAAATTGAATTTGG 61 Query 60 AAGGAGGCTTTGATGGGTTTGAATTTTCCATAATCGCCCCTTGTTTACGGTATTCTTGTT 119 |||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||| Sbjct 62 AAGGAGGCTTTGATGGGTTTGAATTTTCCATAATCGTCCCTTGTTTAC-G-ACTCTTGTT 119 Query 120 GTTTAAAAATGCTATGGCTCTTGAGGGGATGTTGTCTTGATTTTGGGAAAATCTTGTTTG 179 |||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 120 GTTTGAAAATGCTATGGCTCGTGAGGGGATGTTGTTTTGATTTTGGGAAAGTCTTGTTTG 179 Query 180 AATGGTCACGGCTTTTCTGAACATTCGCGTGTTCTTTATTGTCTCGGCTCTGGTTCGAAA 239 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 180 AATGGTCACGGCTTTTCTGAACATTCGCGTGTTCTTTCTTGTCTCGGCTCTGCTTCGAAA 239 Query 240 TGTCTCTAGGCCAAGAAAATGTCGAACCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTAT 299 ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 240 TGTCTCTCGGCCAAGAAAATGTTGATCCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTAT 299 Query 300 ATGAACTTTTATGTTCAGAGACACCCAAGTGGACTCCTCTTA------AGGATTTGCAAA 353 |||||||||||||||| ||||||||||| ||||||||||||| | |||||||||| Sbjct 300 ATGAACTTTTATGTTCTGAGACACCCAAATGGACTCCTCTTAGGGTTGAAGATTTGCAAA 359 Query 354 CATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAAT 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAAT 419 Query 414 ATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTCGGTGTATTTA 473 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 420 ATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTTGGTGTATTTA 479 Query 474 TCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTAT 539 Query 534 CAGTAAAGCTAGACGAGTGGACAGATGATCAAGTTGACATGCTTGCAGGGTACGGTGGAA 593 ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| Sbjct 540 CAGTAAAGCTAGACGAGTGGACAGATGATCAGGTTGACATGCTTGTAGGTTACGGTGGAA 599 Query 594 ACACGGCAGTGAACCAGAGATTCGAGGCTTGCAACATCGACCAGTCAAAGAAACCAAAAC 653 |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| Sbjct 600 ACACGGCAGTGAACGAAAGATTCGAAGCTTGCAACATCGACCAGTCAAAGAAACCAAAAC 659 Query 654 CAGATTCTACTAATGAGGAACGCAATGATTTCATCAGaaaaaaaTATGAGCAGCACCAGT 713 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 660 CAGATTCTACTAATGAGGAACGAAATGATTTCATTAGAAAAAAATATGAGCAGCACCAGT 719 Query 714 TTATGGATCCAAAGGATGGTGCTTTGTGCCCTTATCAGCAGCCTAGCAGAACAAATACTT 773 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 720 TTATGGATCCAAAGGATGGTGCTTTGTGCACTTATCAGCAGCCTAGCAGAACAAACACTT 779 Query 774 CACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCAT 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCAT 839 Query 834 TTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCA 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCA 899 Query 894 TGGCAGGTATGGTTGAGTTTGTGGGATTGATTAAGGTTAACGTGGTAAAAGGAACCAACC 953 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 900 TGGCAGGTATGGTTGAGTTTGTGGGGTTGATTAAGGTTAACGTGGTAAAAGGAACCAACC 959 Query 954 TTGCAGTTCGAGACGTGATGACCAGCGATCCTTATGTTATTCTTGCTCTTGGCCAGCAAT 1013 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 960 TTGCGGTTCGAGACGTGATGACCAGCGATCCTTATGTTATCCTTGCTCTTGGCCAACAAT 1019 Query 1014 CGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCGGTGTGGAATGAGACGCTAATGC 1073 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1020 CGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCTGTGTGGAATGAGACGCTAATGC 1079 Query 1074 TTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCT 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCT 1139 Query 1134 CGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAA 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAA 1199 Query 1194 AAGCATACGAGACATCGAGCATAAAGGAACCAATGCAGCTGGGAAGTTGGGTGGCGAGCA 1253 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1200 AAGCATACGAGACATCGAGCATAAAGGAACCGATGCAGCTGGGAAGTTGGGTGGCGAGCA 1259 Query 1254 AAGAGAACACATTGGTGAGTGATGGCATAATATCACTTGAAGAAGGGAAAGTGAAACAAG 1313 ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| Sbjct 1260 AAGAGAACACATTGGTGAGTGATGGCATAATCTTACTTGAAGACGGGAAAGTGAAACAAG 1319 Query 1314 ACATATCACTTAGGCTTCAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTC 1373 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 ACATTTCACTTAGGCTACAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTC 1379 Query 1374 TTCCTCTCACTCAATGATGATActttcttcttcatccctcttctttcttttt--cttGAA 1431 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || Sbjct 1380 TTCCTCTCACTCAATGATGATACTTTCTTCTTCATCCCTCTTCTTTTTTTTTTTCTTTAA 1439 Query 1432 AAGATTTATTTTTAAATTTATAGTGAA-AAAGAGATTCTGCTACTTTCTTGTTGTTCCAC 1490 ||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||| Sbjct 1440 AAGATTTATTTCTAAATTTATAGTGAAGAAA-AGATGCTGCTACTTTCTTGTTGTTCCAC 1498 Query 1491 CTCAAACAAACCCTATGTATaaaaa-aaCACCATGATTTGATTTGATGATTCTTCAAAAC 1549 |||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 1499 CTCAAACAAAACCTCTGTAAAAAAACAACACCATGATTTGATTTGATGATTCTTCAGAAC 1558 Query 1550 C 1550 | Sbjct 1559 C 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76505630580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5