BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478135
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07940.1 | Symbols: | Calcium-dependent ARF-type GTPase act... 2538 0.0
> AT3G07940.1 | Symbols: | Calcium-dependent ARF-type GTPase activating
protein family | chr3:2529204-2531533 FORWARD LENGTH=1561
Length=1561
Score = 2538 bits (1374), Expect = 0.0
Identities = 1501/1561 (96%), Gaps = 14/1561 (1%)
Strand=Plus/Plus
Query 1 aaaaaa-aaaaTTCAACTGATCTTTAGAGTTTTTAGGTTCTTCCAAGAAATTGAATTTGG 59
|||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAAAATAAAATTCAACTCATCTCTAGAGTTTTTAGGTTCTTCCAAGAAATTGAATTTGG 61
Query 60 AAGGAGGCTTTGATGGGTTTGAATTTTCCATAATCGCCCCTTGTTTACGGTATTCTTGTT 119
|||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||
Sbjct 62 AAGGAGGCTTTGATGGGTTTGAATTTTCCATAATCGTCCCTTGTTTAC-G-ACTCTTGTT 119
Query 120 GTTTAAAAATGCTATGGCTCTTGAGGGGATGTTGTCTTGATTTTGGGAAAATCTTGTTTG 179
|||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 120 GTTTGAAAATGCTATGGCTCGTGAGGGGATGTTGTTTTGATTTTGGGAAAGTCTTGTTTG 179
Query 180 AATGGTCACGGCTTTTCTGAACATTCGCGTGTTCTTTATTGTCTCGGCTCTGGTTCGAAA 239
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 180 AATGGTCACGGCTTTTCTGAACATTCGCGTGTTCTTTCTTGTCTCGGCTCTGCTTCGAAA 239
Query 240 TGTCTCTAGGCCAAGAAAATGTCGAACCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTAT 299
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 240 TGTCTCTCGGCCAAGAAAATGTTGATCCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTAT 299
Query 300 ATGAACTTTTATGTTCAGAGACACCCAAGTGGACTCCTCTTA------AGGATTTGCAAA 353
|||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||
Sbjct 300 ATGAACTTTTATGTTCTGAGACACCCAAATGGACTCCTCTTAGGGTTGAAGATTTGCAAA 359
Query 354 CATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAAT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAAT 419
Query 414 ATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTCGGTGTATTTA 473
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 ATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTTGGTGTATTTA 479
Query 474 TCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTAT 539
Query 534 CAGTAAAGCTAGACGAGTGGACAGATGATCAAGTTGACATGCTTGCAGGGTACGGTGGAA 593
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 540 CAGTAAAGCTAGACGAGTGGACAGATGATCAGGTTGACATGCTTGTAGGTTACGGTGGAA 599
Query 594 ACACGGCAGTGAACCAGAGATTCGAGGCTTGCAACATCGACCAGTCAAAGAAACCAAAAC 653
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 ACACGGCAGTGAACGAAAGATTCGAAGCTTGCAACATCGACCAGTCAAAGAAACCAAAAC 659
Query 654 CAGATTCTACTAATGAGGAACGCAATGATTTCATCAGaaaaaaaTATGAGCAGCACCAGT 713
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 660 CAGATTCTACTAATGAGGAACGAAATGATTTCATTAGAAAAAAATATGAGCAGCACCAGT 719
Query 714 TTATGGATCCAAAGGATGGTGCTTTGTGCCCTTATCAGCAGCCTAGCAGAACAAATACTT 773
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 720 TTATGGATCCAAAGGATGGTGCTTTGTGCACTTATCAGCAGCCTAGCAGAACAAACACTT 779
Query 774 CACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCAT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCAT 839
Query 834 TTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCA 899
Query 894 TGGCAGGTATGGTTGAGTTTGTGGGATTGATTAAGGTTAACGTGGTAAAAGGAACCAACC 953
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 TGGCAGGTATGGTTGAGTTTGTGGGGTTGATTAAGGTTAACGTGGTAAAAGGAACCAACC 959
Query 954 TTGCAGTTCGAGACGTGATGACCAGCGATCCTTATGTTATTCTTGCTCTTGGCCAGCAAT 1013
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 960 TTGCGGTTCGAGACGTGATGACCAGCGATCCTTATGTTATCCTTGCTCTTGGCCAACAAT 1019
Query 1014 CGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCGGTGTGGAATGAGACGCTAATGC 1073
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 CGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCTGTGTGGAATGAGACGCTAATGC 1079
Query 1074 TTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCT 1139
Query 1134 CGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAA 1199
Query 1194 AAGCATACGAGACATCGAGCATAAAGGAACCAATGCAGCTGGGAAGTTGGGTGGCGAGCA 1253
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 AAGCATACGAGACATCGAGCATAAAGGAACCGATGCAGCTGGGAAGTTGGGTGGCGAGCA 1259
Query 1254 AAGAGAACACATTGGTGAGTGATGGCATAATATCACTTGAAGAAGGGAAAGTGAAACAAG 1313
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 1260 AAGAGAACACATTGGTGAGTGATGGCATAATCTTACTTGAAGACGGGAAAGTGAAACAAG 1319
Query 1314 ACATATCACTTAGGCTTCAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTC 1373
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACATTTCACTTAGGCTACAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTC 1379
Query 1374 TTCCTCTCACTCAATGATGATActttcttcttcatccctcttctttcttttt--cttGAA 1431
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1380 TTCCTCTCACTCAATGATGATACTTTCTTCTTCATCCCTCTTCTTTTTTTTTTTCTTTAA 1439
Query 1432 AAGATTTATTTTTAAATTTATAGTGAA-AAAGAGATTCTGCTACTTTCTTGTTGTTCCAC 1490
||||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 1440 AAGATTTATTTCTAAATTTATAGTGAAGAAA-AGATGCTGCTACTTTCTTGTTGTTCCAC 1498
Query 1491 CTCAAACAAACCCTATGTATaaaaa-aaCACCATGATTTGATTTGATGATTCTTCAAAAC 1549
|||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 1499 CTCAAACAAAACCTCTGTAAAAAAACAACACCATGATTTGATTTGATGATTCTTCAGAAC 1558
Query 1550 C 1550
|
Sbjct 1559 C 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5