BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478140
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07990.1 | Symbols: SCPL27 | serine carboxypeptidase-like 27... 2654 0.0
> AT3G07990.1 | Symbols: SCPL27 | serine carboxypeptidase-like
27 | chr3:2552477-2554921 FORWARD LENGTH=1724
Length=1724
Score = 2654 bits (1437), Expect = 0.0
Identities = 1637/1730 (95%), Gaps = 28/1730 (2%)
Strand=Plus/Plus
Query 2 TCCAAATCGTGAGGAAATTCAGAGTTCCATCAGATCTAACTCTCTTAGATCTGATTTTCA 61
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 9 TCCAAATCGTGAGGAAATCCAGAGTTCCATCAGATCTAACTCTCTTAGATCTGATTATCA 68
Query 62 TGGATTACTCTTTTCTTCTAATCATTCTCCTACTCACAATCTCTTCTTCA---TGTAATG 118
||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||| ||
Sbjct 69 TGGATTACTCTTTCCTTCTAATCATTCTCTTACTCACAATCTCTACTTCATGTTGTGCTG 128
Query 119 ------CTTCTTATGTGGAAGAACAATTGAGAGACAGAATCAGTAAGTTACCTGGACAAC 172
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 129 CTCCTTCTTCTTATGTGGAAGAACAATTGAGAGACAGAATCAGTAACTTACCTGGACAAC 188
Query 173 CTAGTAATGTCGATTTTAGACAGTACTCAGGCTATGTCACTGTGAATGAAGTACGTGGAA 232
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 189 CTAGTAATGTCGATTTTAGACAGTACTCAGGCTATGTCACTGTGCATGAAGAACGTGGAA 248
Query 233 GGGCTTTGTTCTACTGGTTGGTCGAGTCTCCATCGACCCGTGACCCAAAGTTTAGACCTT 292
| ||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||
Sbjct 249 GAGCTTTGTTCTACTGGTTGGTCGAGTCTCCGTTGGCCCGTGACCCAAAGTCTAGACCTT 308
Query 293 TGGTTCTGTGGCTCAATGGTGGCCCTGGTTGTTCTTCTGTTGCTTATGGTGCTGCTGAAG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TGGTTCTGTGGCTCAATGGTGGCCCTGGTTGTTCTTCTGTTGCTTATGGTGCTGCTGAAG 368
Query 353 AAATTGGACCTTTTCGTGTTGGTTCTGATGGCAAGACTCTTCATCCCAAACTTTATGCTT 412
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 369 AAATTGGACCTTTTCGTGTTGGTTCTGATGGCAAGACTCTTCATTCCAAACTTTATGCTT 428
Query 413 GGAATCAATTGGCAAACCTGCTATTCTTGGAGTCTCCAGCTGGAGTTGGTTTCTCATATT 472
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GGAATAAATTGGCAAACTTGCTATTCTTGGAGTCTCCAGCTGGAGTTGGTTTCTCATATT 488
Query 473 CAAACACAACTTCAGATCTTTACACAACCGGTGATCAGAGAACAGCTGAAGATTCGTATA 532
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 489 CAAACACAACTTCAGATCTTTACACAACCGGTGATCAGAGAACAGCTGAGGATTCGTACA 548
Query 533 GATTTCTTGTCAACTGGTTTGAGAGGTTTCCACAATACAAACATAGGGATTTTTACATTG 592
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 549 TATTTCTTGTCAACTGGTTTGAGAGGTTTCCACAATACAAGCATAGGGAGTTTTACATTG 608
Query 593 TTGGAGAAAGCTATGCAGGTCATTTTGTTCCTCAATTGTCTAAACTTGTCCATGAAAGAA 652
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 609 TTGGAGAAAGCTATGCAGGTCATTTTGTTCCTCAACTGTCTAAACTTGTCCATGAAAGGA 668
Query 653 ACAAGGGCTTCAAGAACCCGGCTATAAACCTCAAAGGTTTTATGGTGGGAAATGCTGTTA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ACAAGGGCTTCAAGAACCCGGCTATAAACCTCAAAGGTTTTATGGTGGGAAATGCTGTTA 728
Query 713 CAGATGACTATCATGATTATATAGGAACATTTGAATATTGGTGGAATCATGGTCTCATAT 772
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 729 CAGATGACTATCATGATTATATAGGAACATTTGAATACTGGTGGAATCACGGTCTCATAT 788
Query 773 CCGATTCAACGTATCACCAACTAAAGACCGCGTGCTACTCAGAATCATCTCAGCATCCTT 832
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 789 CCGATTCCACGTATCACCAACTAAAGACCGCGTGCTACTCAGTATCATCTCAGCATCCTT 848
Query 833 CACTGCAGTGTATGGTGGCTCTGAGAAATGCCGAACTAGAGCAAGGAAATATCGATCCGT 892
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 849 CAATGCAGTGTATGGTGGCTCTGAGAAATGCCGAATTAGAGCAAGGAAATATCGATCCAT 908
Query 893 ATAGCATTTTCACCAAACCTTGCAACAGTACTGTAGCACTTAAGAGCTTCTTAAAGGGTC 952
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 909 ATAGCATTTTCACCAAACCTTGCAACAGTACTGTGGCACTTAAGAGATTCTTAAAGGGTC 968
Query 953 GCTACCCATGGATGTCAAGAGCTTATGATCCTTGTACAGAGAGATATTCGAATGTGTACT 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 969 GCTACCCATGGATGTCAAGAGCTTATGATCCTTGTACAGAGAGATATTCGAATGTGTATT 1028
Query 1013 TTAACCGCGCGGACGTTCAGAAGGCTCTCCACGCAAACGTCACTCGCTTACCTTACCCCT 1072
|||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1029 TTAACCGCTTGGACGTTCAGAAGGCTCTCCACGCAAATGTCACTCGCTTATCTTACCCCT 1088
Query 1073 GGAAAGCATGCAGTGACATTGTAGGAAGCTATTGGGAAGATTCTCCTCTGTCTATGCTTC 1132
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1089 GGAAAGCATGCAGTGACATTGTAGGAAGCTATTGGGACGATTCTCCTCTGTCTATGCTTC 1148
Query 1133 CTATATACAGAGAATTGATTACTGCAGGTCTCAAAATATGGATCTTCAGTGGGGATACAG 1192
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1149 CTATATACAAAGAATTGATTACTGCAGGTCTCAAAATATGGGTCTTCAGTGGGGATACAG 1208
Query 1193 ATGCGGTTGTTCCTGTAACTGCTACCCGATACTCTGTAGATGCACTGAAGCTAGCAACCA 1252
|||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 ATGCTGTTGTTCCTATAACCGCTACCCGATACTCTGTAGATGCACTGAAGCTAGCAACCA 1268
Query 1253 TCACGAACTGGTACCCGTGGTACGACCATGGCAAGGTAGGTGGGTGGAGTCAAGTTTACA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TCACGAACTGGTACCCGTGGTACGACCATGGCAAGGTAGGTGGGTGGAGTCAAGTTTACA 1328
Query 1313 AAGGACTTACATTAGTGACAGTAGCAGGAGCTGGTCATGAAGTGCCTTTACACCGTCCCC 1372
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1329 AAGGACTTACATTAGTGACAGTAGCAGGAGCTGGTCATGAAGTGCCTCTACACCGTCCCC 1388
Query 1373 GTCAAGCCTTTATTCTTTTCAGATCCTTTTTAGAGAGCAAACCAATGCCTATGACCTGAG 1432
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1389 GGCAAGCCTTTATTCTTTTCAGATCCTTTTTAGAGAGCAAACCAATGCCTATGACTTGAG 1448
Query 1433 ATCAAACCTTGAATGGACCACTTCTCTGAA-TTCCTATTCTTTCTTCTTCATCATCAATA 1491
|| |||||||||||||||| |||||| || ||||| |||||||||||||||||||||||
Sbjct 1449 ATAAAACCTTGAATGGACCTCTTCTCC-AACTTCCTGTTCTTTCTTCTTCATCATCAATA 1507
Query 1492 AACCAA-GTGTTTCTTCATTCACTGTCTTCCTCAATCCTCAGTGCATCCAAACTCAACAC 1550
|||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1508 AACCAAAGTGTTTTTTCATTCACTGTCTTCCTCAATCCTCAGTGCATCCAAATTCAACAG 1567
Query 1551 ACGACTTAAATTATCTGTCTAGTACAAATCATAAGCCACTCTTCAtt-ttttttG-G-GT 1607
| |||| | ||| |||||||||||||||||||||| ||||||| || |||||| | ||
Sbjct 1568 AAGACTGA--TTAGCTGTCTAGTACAAATCATAAGCAACTCTTCTTTCTTTTTTTTGTGT 1625
Query 1608 AAAATCTTTGTCTCAAACAGTTTTTCTATCTTTTCTCCATTATTGTATCATTGTATGATA 1667
||||||||| |||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1626 AAAATCTTT--CTCAAACAGTTTCTCTATCTTTTCTCCATTATTGTAT----GC-TG--- 1675
Query 1668 CAAAGCAAAGTCTTTCACACTACAAATCATAATACTATATGATAGTTTAT 1717
||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 1676 CAAAGCAAAGTCTTTCA-ACTACGAATCATAATACTATAAGATAGTTTAT 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84889121595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5