BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478142
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08010.1 | Symbols: ATAB2 | RNA binding | chr3:2555971-25575... 2115 0.0
AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557... 108 2e-22
> AT3G08010.1 | Symbols: ATAB2 | RNA binding | chr3:2555971-2557505
FORWARD LENGTH=1279
Length=1279
Score = 2115 bits (1145), Expect = 0.0
Identities = 1243/1289 (96%), Gaps = 11/1289 (1%)
Strand=Plus/Plus
Query 1 AAGGAGTAACCGAAAAGGATAAATCGTttcttcttcttcttcttcttcttctattcttcG 60
||||||||||||||||||||||||| |||||||||||||||| | ||| || ||||||
Sbjct 1 AAGGAGTAACCGAAAAGGATAAATCATTTCTTCTTCTTCTTC--C-TCTGCT-TTCTTC- 55
Query 61 TGCTAAAGCTTACTCCTTTTCAATGGCGACGTTAGGCTTTAACACCACTCGAATCCAGAC 120
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 56 --CTAAAGCCTACTCCTTTTCAATGGCGACGTTAGGCTTTAACACAAGGCGAATCCAGAC 113
Query 121 ACCATCACTTCCGAGAATCCCTAAACCTTCTTCTTTTACTAAACCCATCAAAACCCATCA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 114 ACCATCACTTCCGAGAATCCCTAAACCCTCTTCTTTTACTAAACCCATCAAAACCCATCA 173
Query 181 TCTCTTCTCCTCCGAAATTCTGTTGAAACGCTGTCGTTTCGTGTCTAGATCGTTGCCTGA 240
||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 174 TCTCTTCTCCTCCGAAACTCTGTTGAAACGCTGCCGTTTCGTCTCTAGATCGTTACCTGA 233
Query 241 GAGCTCACTGTCGATTACAAAAGAACAAGAAGTAGCTAATGAAGTAGAGGAAGATGATCC 300
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 234 GAGCTCACTGTCGATTACAAAAGAACAAGAGGTAGCTAATGAAGTAGAAGAAGATGATCC 293
Query 301 AACGTCGGAGCTGAGTTATCTGGATCCGGAATCCGATGCCGATAGCATCAAAGAGTGGGA 360
||| || |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 294 AACTTCAGAGCTGAGCTATCTGGATCCTGAATCCGATGCGGATAGCATCAAAGAGTGGGA 353
Query 361 ATTGGATTTCTGCTCGAGGCCAATTCTTGATTCCAGAGGGAAAAAGATTTGGGAGCTTGT 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 354 ATTGGATTTCTGCTCGAGGCCTATTCTTGATTCCAGAGGGAAAAAGATTTGGGAGCTTGT 413
Query 421 GGTTTGTGATGCTTCACTCTCCCTTCAAGTCACTAAATACTTCCCCAATAATGTCATTAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 414 GGTTTGTGATGCTTCACTCTCCCTTCAAGTCACTAAATACTTCCCCAATAACGTCATTAA 473
Query 481 TAGTATTACTCTCAAAGACGCCATTGTTACCATCACTCAAGACTTGGGTGTTCCTCTTCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TAGTATTACTCTCAAAGACGCCATTGTTACCATCACTCAAGACTTGGGTGTTCCTCTTCC 533
Query 541 TGAGAAGATTCGCTTCTTCAGGTCACAGATGCAAACCATTATCACAAAAGCTTGCAAAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGAGAAGATTCGCTTCTTCAGGTCACAGATGCAAACCATTATCACAAAAGCTTGCAAAGA 593
Query 601 GCTTGCCATAAAGGCAGTGCCTAGTAAACGGTGTCTGTCTCTGTTTCTGTGGTTGCAAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTTGCCATAAAGGCAGTGCCTAGTAAACGGTGTCTGTCTCTGTTTCTGTGGTTGCAAGA 653
Query 661 ACGTTATGACACTGTGTACACGCGTCATCCCGGGTTTC-AAAAGGGATCATTGCCTCTTC 719
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 654 ACGTTATGACACTGTGTACACGCGTCATCCCGG-TTTCCAAAAGGGATCATTGCCTCTTC 712
Query 720 TGTCTCTAGACAATCCCTTTCCAATGAATCTTCCGGAGAACTTGTTTGGGGAGAAATGGG 779
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGTCTCTCGACAATCCCTTTCCAATGAATCTTCCGGAGAACTTGTTTGGGGAGAAATGGG 772
Query 780 CATTTGTTCAATTACCTTACTCAGCTGTTAGAGAGGAGATCTCAAACTTTGACGAGAAGT 839
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 773 CATTTGTTCAATTACCTTACTCAGCTGTTAGAGAGGAGATCTCAGATTTTGATGAGAAGT 832
Query 840 TTGTGTTTGGTGCTACCTTAGACTTGGATTTGCTTGGCATTGAAGTGGATGAGAATACAC 899
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 833 TTGTGTTTGGTGCTAGCTTAGACTTGGATTTACTTGGCATTGAAGTGGATGAGAATACTC 892
Query 900 TGATTCCTGGTCTCTCTGTTGCTACTTCACGAGCCAAACCTCTAGGAGCTTGGATGAATG 959
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 893 TGATTCCTGGTCTCTCTGTTGCTACTTCACGTGCCAAACCTCTAGCAGCTTGGATGAATG 952
Query 960 GGCTTGAAGTATGTTCGATTGAAGCAGACAGTTCCAAAGGATGTTTGATTCTATCAGTTG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GGCTTGAAGTATGTTCGATTGAAGCAGACAGTTCCAAAGGATGTTTGATTCTATCAGTTG 1012
Query 1020 GGATCGCGACAAGGTATGTCTACGCGACCTATAAGAAGACCCCTGTCACTACTGATGAAG 1079
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGATCGCTACAAGGTATGTCTACGCGACCTATAAGAAGACCCCTGTCACTACTGATGAAG 1072
Query 1080 CTGATGCTTGGGAATCTGCAAAGAAAGCAAGTGGAGGTTTGCATTTTCTTGCAATTCAAG 1139
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1073 CTGAAGCTTGGGAATCTGCAAAGAAAACAAGTGGAGGTTTGCATTTTCTTGCAATTCAAG 1132
Query 1140 ATGACTTAGATTCTGATGACTGTGTTGGCTTTTGGCTTCTTATTGATTTGCCACCACCCC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATGACTTAGATTCTGATGACTGTGTTGGCTTTTGGCTTCTTATTGATTTGCCACCACCCC 1192
Query 1200 CTGTTTGATTTCCCCTTTGATAAATGTTTATACCATATTTTGCCATTTAGTAACAAAGAT 1259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1193 CTGTTTGATTTCCCTTTTGATAAATGTTTATACCATATTTTGCCATTTAGTAACA--GAT 1250
Query 1260 TTCTCACAAGCTTGAATTTGAACAAATTG 1288
|||| ||| ||||||||||||||||||||
Sbjct 1251 TTCTGACATGCTTGAATTTGAACAAATTG 1279
> AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557437-2561802
REVERSE LENGTH=2924
Length=2924
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 1218 GATAAATGTTTATACCATATTTTGCCATTTAGTAACAAAGATTTCTCACAAGCTTGAATT 1277
|||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 2924 GATAAATGTTTATACCATATTTTGCCATTTAGTAAC--AGATTTCTGACATGCTTGAATT 2867
Query 1278 TGAACAAATTG 1288
|||||||||||
Sbjct 2866 TGAACAAATTG 2856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5