BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478145 Length=1427 Score E Sequences producing significant alignments: (Bits) Value AT3G08030.1 | Symbols: | Protein of unknown function, DUF642 |... 1899 0.0 > AT3G08030.1 | Symbols: | Protein of unknown function, DUF642 | chr3:2564033-2566002 FORWARD LENGTH=1439 Length=1439 Score = 1899 bits (1028), Expect = 0.0 Identities = 1137/1190 (96%), Gaps = 5/1190 (0%) Strand=Plus/Plus Query 239 CTTCTTCAGGATATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 298 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 CTTCTGAAGGTTATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 288 Query 299 AGAAAACAGTTCTAATCGGCAAAACCGCCTTACCCGAATGGGAAATCACCGGTTTCGTCG 358 |||||||||||||| | ||||||| |||||| ||||||||||||| |||||||||||||| Sbjct 289 AGAAAACAGTTCTACTAGGCAAAAACGCCTTGCCCGAATGGGAAACCACCGGTTTCGTCG 348 Query 359 AGTACATCGCCGGCGGTCCTCAGCCGGGAGGCATGTTTTTTCCAGTGGCTCATGGAGTCC 418 ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| Sbjct 349 AGTACATCGCCGGCGGTCCTCAGCCAGGAGGCATGTACTTCCCAGTGGCTCATGGAGTCC 408 Query 419 ACGCCGTGAGGCTCGGAAACGAAGCCACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 478 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 409 ACGCCGTGAGGCTCGGAAACGAAGCTACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 468 Query 479 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAGGTTCTTAGAG 538 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 469 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAAGTTCTTAGAG 528 Query 539 TCTCTGTGCCTTCTCAGTTTGGTGACTTGCCGCTTCAGACACTTTACAACAGCTTCGGAG 598 ||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||| Sbjct 529 TCTCTGTACCTTCTCAGTCCGGTGACTTGCCACTTCAAACACTTTACAACAGTTTCGGAG 588 Query 599 GTGACGTGTACGCTTGGGCCTTCGTCGCTAAGACTTCTCAAGTTACTGTGACTTTCCATA 658 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 589 GTGACGTGTACGCTTGGGCCTTCGTCGCCAAGACTTCTCAAGTTACTGTGACTTTCCACA 648 Query 659 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 708 Query 719 AGCTTGTTCGTCCAATCTACACCAAAGGGAACTTGGTGAAGAACGGAGGGTTCGAAGAAG 778 ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 709 AGCTTGTTCATCCAATCTACACCAGAGGGAACTTGGTGAAGAATGGAGGGTTCGAAGAAG 768 Query 779 GTCCTCACCGTCTTGTAAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 838 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GTCCTCACCGTCTAGTGAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 828 Query 839 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 888 Query 899 CTAAGTACTTTAATGTCCCCTTTGGCCATGCTGCGATCGAGCTCGTTGCAGGCAAAGAAA 958 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 889 CTAAGTACTTTAATGTCCCCTTTGGACATGCTGCGATCGAGCTAGTTGCAGGCAAAGAAA 948 Query 959 GTGCCATTGCACAAGTCATTAGAACTTCACCTGGTCAAACTTACACCCTCTCCTTCGTTG 1018 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 949 GTGCCATTGCACAAGTCATTAGAACCTCTCCTGGTCAAACTTACACCCTCTCCTTCGTCG 1008 Query 1019 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCA-AG 1077 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1009 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCAGAG 1068 Query 1078 GATACACTCAAAGTGCCACACACTTCCGTTGGTGGAGGTCATTTTAAGACCGCGAGTTTC 1137 ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1069 -ATACACTCAAAGTACCACACACTTCCGTTGGTGGAGGTCATGTCAAGACCGCGAGTTTC 1127 Query 1138 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1187 Query 1198 AAGAAGACTGATATTGGATCTCTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1257 ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1188 AAGAAGACTGATACTGTATCTTTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1247 Query 1258 GTCGCTTAGATTAAGTTTACTCTTTATCACAAGTCTGCATCTTGTGTTCTTAGACTGGTC 1317 ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| Sbjct 1248 GTCGCTTAGATTAAGTTTACTCTTTATGACAA--CTGCA-CTTGTGTTCTTAGACTGGTC 1304 Query 1318 ATGGACTTGGTTCTTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTAAGTTATAGCCATC 1377 ||||||||||| | |||||||||||||||||||||||||||||||| |||||| | |||| Sbjct 1305 ATGGACTTGGTGCCTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTGAGTTATTGTCATC 1364 Query 1378 ACGTTAAAATGAATGATATATTATTGTTATATGAGATGTTTTGAGTCAAA 1427 | ||||||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 1365 AAGTTAAAATGAATGATATATTATTGTAATATGAAATGTTTTGAGTTAAA 1414 Score = 202 bits (109), Expect = 8e-51 Identities = 122/128 (95%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 1 CCTCACTCACTCTTCTCCGAGGAAGAACAAAAGAGACAATGGCGGCTCCCAAAGCCATTA 60 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 121 CCTCACTCACTCTTCTCCGAGGAAGAACAACAGAGACAATGGCGGTTCCCAAAGCCATTA 180 Query 61 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTTGGAGCCCCTGCTTATGAAGGTA 120 ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| Sbjct 181 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTCGGAGCTCCTGCTTCTGAAGGT- 239 Query 121 TATCTTCG 128 |||||||| Sbjct 240 TATCTTCG 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70330963545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5