BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478145
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08030.1 | Symbols: | Protein of unknown function, DUF642 |... 1899 0.0
> AT3G08030.1 | Symbols: | Protein of unknown function, DUF642
| chr3:2564033-2566002 FORWARD LENGTH=1439
Length=1439
Score = 1899 bits (1028), Expect = 0.0
Identities = 1137/1190 (96%), Gaps = 5/1190 (0%)
Strand=Plus/Plus
Query 239 CTTCTTCAGGATATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 298
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CTTCTGAAGGTTATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 288
Query 299 AGAAAACAGTTCTAATCGGCAAAACCGCCTTACCCGAATGGGAAATCACCGGTTTCGTCG 358
|||||||||||||| | ||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 289 AGAAAACAGTTCTACTAGGCAAAAACGCCTTGCCCGAATGGGAAACCACCGGTTTCGTCG 348
Query 359 AGTACATCGCCGGCGGTCCTCAGCCGGGAGGCATGTTTTTTCCAGTGGCTCATGGAGTCC 418
||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 349 AGTACATCGCCGGCGGTCCTCAGCCAGGAGGCATGTACTTCCCAGTGGCTCATGGAGTCC 408
Query 419 ACGCCGTGAGGCTCGGAAACGAAGCCACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 409 ACGCCGTGAGGCTCGGAAACGAAGCTACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 468
Query 479 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAGGTTCTTAGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAAGTTCTTAGAG 528
Query 539 TCTCTGTGCCTTCTCAGTTTGGTGACTTGCCGCTTCAGACACTTTACAACAGCTTCGGAG 598
||||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||||||
Sbjct 529 TCTCTGTACCTTCTCAGTCCGGTGACTTGCCACTTCAAACACTTTACAACAGTTTCGGAG 588
Query 599 GTGACGTGTACGCTTGGGCCTTCGTCGCTAAGACTTCTCAAGTTACTGTGACTTTCCATA 658
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 589 GTGACGTGTACGCTTGGGCCTTCGTCGCCAAGACTTCTCAAGTTACTGTGACTTTCCACA 648
Query 659 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 708
Query 719 AGCTTGTTCGTCCAATCTACACCAAAGGGAACTTGGTGAAGAACGGAGGGTTCGAAGAAG 778
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 709 AGCTTGTTCATCCAATCTACACCAGAGGGAACTTGGTGAAGAATGGAGGGTTCGAAGAAG 768
Query 779 GTCCTCACCGTCTTGTAAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 838
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GTCCTCACCGTCTAGTGAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 828
Query 839 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 888
Query 899 CTAAGTACTTTAATGTCCCCTTTGGCCATGCTGCGATCGAGCTCGTTGCAGGCAAAGAAA 958
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 889 CTAAGTACTTTAATGTCCCCTTTGGACATGCTGCGATCGAGCTAGTTGCAGGCAAAGAAA 948
Query 959 GTGCCATTGCACAAGTCATTAGAACTTCACCTGGTCAAACTTACACCCTCTCCTTCGTTG 1018
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 949 GTGCCATTGCACAAGTCATTAGAACCTCTCCTGGTCAAACTTACACCCTCTCCTTCGTCG 1008
Query 1019 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCA-AG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1009 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCAGAG 1068
Query 1078 GATACACTCAAAGTGCCACACACTTCCGTTGGTGGAGGTCATTTTAAGACCGCGAGTTTC 1137
||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1069 -ATACACTCAAAGTACCACACACTTCCGTTGGTGGAGGTCATGTCAAGACCGCGAGTTTC 1127
Query 1138 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1187
Query 1198 AAGAAGACTGATATTGGATCTCTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1257
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AAGAAGACTGATACTGTATCTTTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1247
Query 1258 GTCGCTTAGATTAAGTTTACTCTTTATCACAAGTCTGCATCTTGTGTTCTTAGACTGGTC 1317
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 1248 GTCGCTTAGATTAAGTTTACTCTTTATGACAA--CTGCA-CTTGTGTTCTTAGACTGGTC 1304
Query 1318 ATGGACTTGGTTCTTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTAAGTTATAGCCATC 1377
||||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1305 ATGGACTTGGTGCCTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTGAGTTATTGTCATC 1364
Query 1378 ACGTTAAAATGAATGATATATTATTGTTATATGAGATGTTTTGAGTCAAA 1427
| ||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 1365 AAGTTAAAATGAATGATATATTATTGTAATATGAAATGTTTTGAGTTAAA 1414
Score = 202 bits (109), Expect = 8e-51
Identities = 122/128 (95%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1 CCTCACTCACTCTTCTCCGAGGAAGAACAAAAGAGACAATGGCGGCTCCCAAAGCCATTA 60
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 121 CCTCACTCACTCTTCTCCGAGGAAGAACAACAGAGACAATGGCGGTTCCCAAAGCCATTA 180
Query 61 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTTGGAGCCCCTGCTTATGAAGGTA 120
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 181 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTCGGAGCTCCTGCTTCTGAAGGT- 239
Query 121 TATCTTCG 128
||||||||
Sbjct 240 TATCTTCG 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70330963545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5