BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478146
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08040.1 | Symbols: FRD3, MAN1, ATFRD3 | MATE efflux family ... 2813 0.0
> AT3G08040.1 | Symbols: FRD3, MAN1, ATFRD3 | MATE efflux family
protein | chr3:2566277-2569499 REVERSE LENGTH=1999
Length=1999
Score = 2813 bits (1523), Expect = 0.0
Identities = 1702/1786 (95%), Gaps = 22/1786 (1%)
Strand=Plus/Plus
Query 1 ACTATAAACGTTCCTTTTGCTTCCCCGATTCTTCGAAACACTTATTGATATCTTCAGATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTATAAACGTTCCTTTTGCTTCCCCGATTCTTCGAAACACTTATTGATATCTTCAGA-- 58
Query 61 CACAACAAATTAATTACAGAGACAGTTACGA-AGG-AAAAGATTTATGACGGAAACTGGT 118
||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||
Sbjct 59 CACAACAAATTAATTACAGAGACAGTTAC-AGAGGAAAAAGATCTATGACGGAAACTGGT 117
Query 119 GATGATCTTGCTACGGTTCCAACCAGCGTGACCAAGTCAATCCCATTTCTTGTTATCTTC 178
|||||||||||||||| | | | | ||| ||||||||||||| |||||||||
Sbjct 118 GATGATCTTGCTACGG-T--GA--A----G---AAGCCAATCCCATTTCTCGTTATCTTC 165
Query 179 AAAGATTTAAGACATGTATTCAGTAGGGATACAATTGGGCGAGAGATTCTAGGCATGGCG 238
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 166 AAAGATTTAAGACATGTATTCAGTAGGGACACAACTGGGCGAGAGATTCTAGGCATCGCG 225
Query 239 TTTCCAACAGCTTTGGCTTTAGCTGCTGATCCAATCGCTTCTCTGATTGATACCGCTTTT 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TTTCCAGCAGCTTTGGCTTTAGCTGCTGATCCAATCGCTTCTCTGATTGATACCGCTTTT 285
Query 299 GTCGGGCGTTTAGGAGCGGCTCAGCTAGCGGCGGTTGGAGTCTCCATTGCCATATTCAAT 358
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 286 GTCGGGCGTTTAGGAGCGGTTCAGCTAGCGGCGGTTGGAGTTTCCATTGCCATATTCAAT 345
Query 359 CAAGCATCTAGAATTACGATGTTCCCACTTGTGAGCCTCACGACTTCGTTTGTGGCAGAG 418
||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 346 CAAGCTTCTAGAATTACGATATTCCCACTTGTGAGCCTCACAACTTCATTTGTGGCAGAG 405
Query 419 GAAGACACGATGGAGAAGATGAAAGAAGAAGCGAACAAAGCCAGTCTTGTTCATGCAGAA 478
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 406 GAAGACACGATGGAGAAGATGAAAGAAGAAGCAAACAAAGCCAATCTTGTTCATGCAGAA 465
Query 479 ACTATACTTGTTCAAGATTCCTTGGAAAAGGGCATTTCTTCACCTACAAGTAACAATACC 538
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 466 ACTATACTTGTTCAAGATTCTTTGGAAAAGGGCATTTCTTCACCTACAAGTAACGATACC 525
Query 539 AACCAGCCACAGCAA-CTCCCAGCTTTGGATACAAAGTCAAATAGTGGAAACAAAGCGAC 597
||||||||||||||| || |||||| |||||||||||||||||| ||||||||| |||
Sbjct 526 AACCAGCCACAGCAACCT-CCAGCTCCGGATACAAAGTCAAATAGCGGAAACAAATCGAA 584
Query 598 TAAAAAGGGGAAGAGGACCATTAGAACAGCATCAACATCTATGATATTGGGGTTAATCCT 657
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 585 TAAAAAGGAGAAGAGGACCATTAGAACAGCATCAACAGCTATGATCTTGGGGTTAATCCT 644
Query 658 CGGCCTTGTGCAAGCTATTTTCTTGATTTTCAGCTCCAAGTTGCTTCTAGGCTTCATGGG 717
|||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 645 TGGCCTTGTGCAAGCTATTTTCTTGATTTTCAGTTCAAAGTTGCTTCTAGGCGTCATGGG 704
Query 718 AGTGAAACCAAATTCGCCAATGTTATCACCAGCACACAAGTACTTGAGTATACGAGCTTT 777
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 705 AGTGAAACCAAATTCACCAATGTTATCACCAGCACACAAGTACTTGAGCATACGAGCTTT 764
Query 778 GGGGGCCCCTGCATTGCTTCTATCTCTTGCTATGCAAGGCGTCTTTCGTGGCTTCAAGGA 837
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 765 GGGGGCTCCTGCATTGCTTCTATCTCTTGCTATGCAAGGCATCTTTCGTGGATTCAAGGA 824
Query 838 TACCAAAACTCCTCTCTTTGCCACTGTCGTAGCAGATGTTATCAACATCGTTCTCGACCC 897
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 CACCAAAACTCCTCTCTTTGCCACTGTCGTAGCAGATGTTATCAACATAGTTCTCGACCC 884
Query 898 CATCTTCATTTTTGTGCTTCGTCTCGGGATCAGCGGTGCAGCCATTGCCCATGTCATTTC 957
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 885 CATCTTCATTTTTGTGCTTCGTCTAGGGATCATCGGTGCAGCCATTGCCCATGTCATTTC 944
Query 958 TCAGTACTTCATGACTCTAATATTGTTCGTCTGCCTCGCAAAGAAAGTTAATTTGATTCC 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 945 TCAGTACTTCATGACTCTAATATTGTTCGTCTTCCTCGCAAAGAAAGTTAATTTGATTCC 1004
Query 1018 ACCAAACTTCGGGGATTTGCAGTTCGGAAGGTTCCTTAAAAATGGGATACTATTGCTGGC 1077
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1005 ACCAAACTTCGGGGATTTGCAGTTTGGAAGGTTCCTTAAAAATGGGCTACTATTGCTGGC 1064
Query 1078 GAGGACTATAGCAGTGACGTTTTGTCAGACCTTAGCAGCAGCAATGGCGGCTCGGCTGGG 1137
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1065 GAGGACCATAGCAGTGACGTTTTGTCAGACCTTAGCAGCAGCAATGGCGGCGCGGCTGGG 1124
Query 1138 TACAACACCAATGGCTGCTTTTCAGATTTGTTTACAAGTCTGGTTAACATCTTCTCTTCT 1197
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1125 TACAACACCAATGGCTGCTTTTCAGATTTGTTTACAAGTATGGTTAACTTCTTCTCTTCT 1184
Query 1198 CAATGATGGTCTTGCCGTTGCTGGTCAGGCGATCCTGGCTTGTTCGTTTGCTGAGAAGGA 1257
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1185 CAATGATGGTCTTGCCGTTGCTGGTCAGGCGATTCTGGCTTGTTCGTTTGCTGAGAAGGA 1244
Query 1258 CTATAACAAAGTGACTGCTGTTGCATCCCGTGTTCTACAGATGGGTTTTGTGTTAGGACT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 CTATAACAAAGTGACTGCTGTTGCATCCCGTGTTCTACAGATGGGTTTTGTGTTAGGACT 1304
Query 1318 TGGACTGTCCGTTTTTGTTGGACTAGGTCTCTACTTTGGTTCCGGAATATTCTCCAAGGA 1377
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1305 TGGACTGTCCGTTTTTGTTGGACTAGGTCTCTACTTTGGTGCCGGAGTTTTCTCCAAGGA 1364
Query 1378 CCCTGCTGTTATTCACCTCATGACCATTGGAATACCGTTTATAGCAGCCACGCAGCCAAT 1437
|||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 1365 CCCTGCTGTTATTCACCTCATGGCCATCGGAATACCGTTTATAGCAGCAACGCAGCCAAT 1424
Query 1438 AAACTCACTCGCCTTTGTATTGGATGGAGTCAATTTTGGAGCATCTGATTTTGCTTACAC 1497
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAACTCTCTCGCCTTTGTATTGGATGGAGTCAATTTTGGAGCATCTGATTTTGCTTACAC 1484
Query 1498 TGCATACTCCATGGTGGGAGTGGCGGCCATAAGCATTGGAGCAGTAATATATATGGCAAA 1557
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1485 TGCATACTCCATGGTGGGAGTGGCGGCCATAAGCATTGCAGCAGTAATATATATGGCAAA 1544
Query 1558 GACCAATGGTTTCATAGGAATATGGATAGCTCTTACAATCTATATGGGTCTCCGTGCTAT 1617
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1545 GACCAATGGTTTCATAGGAATATGGATAGCTCTTACAATCTATATGGCTCTCCGGGCTAT 1604
Query 1618 TACTGGAATTGCCAGGATGGCAACAGGAACTGGACCGTGGAGGTTCTTGCGTGGACGATC 1677
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TACTGGAATTGCCAGGATGGCGACAGGAACTGGACCGTGGAGGTTCTTGCGTGGACGATC 1664
Query 1678 ATCCTCTTCATCTTCCTAGGACTTAGTTTATTTATATCGAGTTGCATCTCcttcttcctt 1737
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1665 ATCCTCTTCATCTTCCTAGGACTTAGTTTATTTATAACGAGTTGCATCTC-TTCTTCCTT 1723
Query 1738 cttcgtttttgtttctggttcttgtgtttctttttttAACAGTTTT 1783
|||||||||||||| |||||||||||||| ||||| |||| ||||
Sbjct 1724 CTTCGTTTTTGTTTATGGTTCTTGTGTTTGTTTTTC-AACA-TTTT 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91415192445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5