BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478147
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08500.1 | Symbols: MYB83, AtMYB83 | myb domain protein 83 |... 1932 0.0
AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86 |... 95.3 1e-18
> AT3G08500.1 | Symbols: MYB83, AtMYB83 | myb domain protein 83
| chr3:2576794-2578246 REVERSE LENGTH=1370
Length=1370
Score = 1932 bits (1046), Expect = 0.0
Identities = 1199/1272 (94%), Gaps = 14/1272 (1%)
Strand=Plus/Plus
Query 1 ATCTCTCCCTCTCTTTGTCATACCCATTACGCATATTCGTATCATTCCAAAGCAATCCCC 60
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 18 ATCTCTTTCTCTCTTTGTCATATCCATTACGCATATTCGTATCATTCCAAAGCAATCCCC 77
Query 61 ACAAATCATATCATCCTCTCTATCTTTCTTTCCTTGCTTCATACAATCTCTCCAAATTAT 120
|||||||||||||||||||| | |||||||||||||| |||||||||||| |||| |
Sbjct 78 ACAAATCATATCATCCTCTC---C-ATCTTTCCTTGCTTCTTACAATCTCTCC-AATT-T 131
Query 121 -ACATCTGTATACTCTTCTTCAAAAAGGCTCCACCAGTCCAAAATGATGATGAGGAAACC 179
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CAAATCTGTATACTCTTCTTCAAAAAGGCTCCACCAGTCCAAAATGATGATGAGGAAACC 191
Query 180 GGACATTACTACGATCAGAGACAAGGGCAAGCCAAATCATGCATGTGGTGGTAATAACAA 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 192 GGACATTACTACGATCAGAGACAAAGGCAAGCCAAATCATGCATGTGGTGGTAATAACAA 251
Query 240 CAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGACGAGAAGCTCATAAGATA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 252 CAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGATAAGATA 311
Query 300 CATGTTGACTAATGGACAAGGATGTTGGAGTGACATTGCTAGAAATGCTGGTCTTTTACG 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 312 CATGTTGACTAATGGACAAGGATGTTGGAGTGACATCGCTAGAAATGCTGGTCTTTTACG 371
Query 360 TTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGCGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 372 TTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGTGG 431
Query 420 CTCCTTCTCTCCTCAAGAAGAGGATCTCATCTTCCATTTGCATTCTATTCTTGGTAACAG 479
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 432 ATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCATTCCATTCTTGGTAACAG 491
Query 480 GTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGGACAGACAACGAGATCAAAAACTTTTG 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 492 GTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGAACAGACAACGAGATCAAAAACTTTTG 551
Query 540 GAACTCGACATTGAAGAAGAGGCTTAAGAATAACAACAACAACAATAATTCATCAGGATC 599
||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||
Sbjct 552 GAACTCGACATTGAAGAAGCGGCTTAAGAACAACAGCAACAACAATACTTCATCAGGATC 611
Query 600 ATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGG 671
Query 660 AGGCAACTCTGCTCCATTGATGGATGGCTATCACCATGATGACAACATGATGATAGTGGG 719
||||||||| || |||||||||||| |||||| |||||||| |||||||||| ||||||
Sbjct 672 AGGCAACTCAACTTCATTGATGGATGACTATCATCATGATGAAAACATGATGACAGTGGG 731
Query 720 GAATACAATGCGCATGGAATCTTCTTCCTCATTCAATTTTGCACCAGTGGTTAATAGTGT 779
||| || ||||||||||| ||||| ||| |||||||| ||| |||| |||||||||||||
Sbjct 732 GAACACCATGCGCATGGACTCTTCCTCCCCATTCAATGTTGGACCAATGGTTAATAGTGT 791
Query 780 GGGCTTAAACCAGCTTGATGATCCCCTGATGATATCAGTACCAGATAACCAATATCACCA 839
|||||||||||| ||| |||||||| ||||||||||||| || |||||| |||||||||
Sbjct 792 GGGCTTAAACCAACTTTATGATCCCTTGATGATATCAGTGCCGGATAACGGATATCACCA 851
Query 840 AATGGGAAACACAGGGAATGTGTTCAACGTTAATGGCTTAGGAGATTATGGAAACACAAT 899
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 852 AATGGGAAACACAGTGAATGTGTTCAGCGTTAATGGTTTAGGAGATTATGGAAACACAAT 911
Query 900 TCTTGATCCATTTAGCAAGAGAGTATCAGTAGAA-G-G-TGATTGGTTTC-TTCCCCCCT 955
|||||||||| ||||||||||||||||||||||| | | ||||||| ||| |||||||||
Sbjct 912 TCTTGATCCAATTAGCAAGAGAGTATCAGTAGAAGGTGATGATTGG-TTCATTCCCCCCT 970
Query 956 CGGAGAATACCAATGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAAG-TCTTC 1014
||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 971 CGGAGAATACCAACGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAGGCCCTT- 1029
Query 1015 GATCCTTGCTTCAATAGCAAAAATGTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTG 1074
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1030 GATCCTTGCTTCAATAGCAAAAATCTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTG 1089
Query 1075 TTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTG 1149
Query 1135 GATGGTCTCATCGATAACAACTCTTCTTTCCCCTTCCTTGATTTCCAAGTCGATTGACAA 1194
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1150 GATGGTCTCATCGATAACAACTCTTCTTTTCCCTTCCTTGATTTCCAAGTCGATTGACAA 1209
Query 1195 TTTCTCTCTCTCCCTTTCATTCCATCTTCTTTTATTCATTCCTCCTTATTCATTCTTATA 1254
||||||||| | | |||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1210 TTTCTCTCTTTTCATTTCATTCTATCTTCTTTTACTCATTCCTTCTTATTCATTCTTATA 1269
Query 1255 TACAtttttttt 1266
|||| ||||||
Sbjct 1270 CACATATTTTTT 1281
> AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86
| chr5:9331573-9333174 REVERSE LENGTH=1391
Length=1391
Score = 95.3 bits (51), Expect = 1e-18
Identities = 234/317 (74%), Gaps = 34/317 (11%)
Strand=Plus/Plus
Query 246 GAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGACGAGAAGC-TCAT-AAGATACAT- 302
||||||||||||||| |||||||| ||||| ||||| ||||| | || | || |||||
Sbjct 160 GAAGCTAAGAAAAGGCCTTTGGTCTCCTGAAGAAGATGAGAAACTTC-TCAA-TTACATC 217
Query 303 -GTTGACTAATGGACAAGGATGTTGGAGTGACAT-T-GCTAGAAAT-GCTGGTCTT-TTA 357
| ||| |||| || || ||||||||| | | | ||| || | || ||| || |
Sbjct 218 ACTAGAC--ATGGTCATGGCTGTTGGAGT-TC-TGTCCCTA-AACTCGCAGGT-TTGCAA 271
Query 358 CGTTGTGGTAAA-AGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACG 416
| ||||| ||| |||||| | ||| | ||||| ||||| ||||| || ||| ||||| |
Sbjct 272 AGATGTGG-AAAGAGTTGTAGACTTAGGTGGATAAATTATTTGAGACCAGAT-TTAAA-G 328
Query 417 CG-GCTCCTTCTCTCCTCAAGAAG-AG-GATC-TCATC-TTCCATTTGCATTCTATTC-T 470
| | ||| ||| ||||||| | || | | | ||| || | | ||| | | | |
Sbjct 329 AGAGGAGCTT-TCT-CTCAAGACGAAGAAAGCTTGATCATT-GAGCTCCATGC--TGCAT 383
Query 471 T-GGTAACAGGTGGTCTCAAATAGCTACTCGGCTT-CCAGGTAGGACAGACAACGAGATC 528
| || ||||| ||||||||||| || || ||| || || || || |||||||||||||||
Sbjct 384 TAGGCAACAGATGGTCTCAAATCGCAACGCGG-TTACCGGGAAGAACAGACAACGAGATC 442
Query 529 AAAAACTTTTGGAACTC 545
|||||||||||||||||
Sbjct 443 AAAAACTTTTGGAACTC 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5