BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478149
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08505.2 | Symbols: | zinc finger (CCCH-type/C3HC4-type RIN... 1932 0.0
> AT3G08505.2 | Symbols: | zinc finger (CCCH-type/C3HC4-type RING
finger) family protein | chr3:2580077-2582129 REVERSE LENGTH=1375
Length=1375
Score = 1932 bits (1046), Expect = 0.0
Identities = 1236/1325 (93%), Gaps = 24/1325 (2%)
Strand=Plus/Plus
Query 38 tttttt-ttCTCTCCGCAC-AATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTG 95
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TTTTTTCTTCTCTCCGCACAAATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTG 117
Query 96 TCCATGGCTCGTGCTTGAAAGGAGAAAATTGTGAATTTTCCCATGATTCTAAGGATCCGC 155
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 118 TCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGC 177
Query 156 CCAATAATGTTTGCACATTCTACCAAAAAGGAATATGTTTCTACGGAAGTAGATGTCGAT 215
|||||||||||||||||||||| || ||| |||||||||| ||||||||||||||| |||
Sbjct 178 CCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGAT 237
Query 216 ATGATCATGTCAGAGCTGCTTCCAATGTTCCTCTTAGCTTAGATTCTGAGTCTCTGGATC 275
| |||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||
Sbjct 238 ACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATC 297
Query 276 GCTCTATATCCACCACTCCCTCTAGGAATCTGCAACAACAA-G-G--AACACCCGACGGT 331
|||||||||||||||| ||||||||| || ||||||||||| | | || | ||||||
Sbjct 298 GCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATA-ATGACGGT 356
Query 332 GATAAATCGC-CTAACGTCTATTGTATCCACCCAAGAGAGTACCCGATCTGCTCTTTTGC 390
|| ||||| | ||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 357 GACAAATC-CTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGC 415
Query 391 TGCAGCTGGTGATTGCCCGCGAGGAAACCAGTGTCCTCATATGCATGGAGACCTCTGCAA 450
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 416 TGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAA 475
Query 451 TACTTGTGGCAAGAAGTGTTTGCATCCTTTCAGACCCGAAGAACGAGAAGAGCACACTAA 510
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 476 TACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAA 535
Query 511 AGAATGTGAGAAGAAGCAAAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATCGAGTG 570
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 536 AGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTG 595
Query 571 TAGCGTGTGTTTGGATCGTATCTTGTCAAAGGCAACTCCAGGGGAAAGGAAGTTTGGGCT 630
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 TAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCT 655
Query 631 GTTGACCGAGTGCGATCATCCGTTTTGTATACAATGCATTCGTAATTGGCGCAGCAGTGC 690
|||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 656 GTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGC 715
Query 691 TCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCCTGTCCTATATGTCGCAAACT 750
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 TCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACT 775
Query 751 CTCTTATTTTGTTGTCCCCAGTGTTGTCTGGTACTCTACTCCTGAAGAGAAAAAGGAAAT 810
|||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||
Sbjct 776 CTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAAT 835
Query 811 TATCGACATATATAAGGCAAAACTCAGATCTATTGACTGTAAGCACTTCAACTTTGGAAA 870
|||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 836 TATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAA 895
Query 871 TGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTT 955
Query 931 GGAAGAAGTTGTTTTGCGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACTGGCAG 990
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 956 GGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAG 1015
Query 991 TATCAGGCTATCAGAGTTGCTTGGAGGCCTGCAGATTTTCTAAAATATTCTTTCCCATAA 1050
|||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |
Sbjct 1016 TATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAAAATATTTTTTCCCAGA- 1074
Query 1051 TAA-TCAAATAACACAAGGTGGTGATGACAACTTATT-TTCTTATCAAACTCATTTTGAT 1108
||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1075 TAAATCGAATAACACAAGGTGGTGATGACAACTTAATATTCTTATCAAACTCATTTTGAT 1134
Query 1109 TCTGAGTTTTGACAATCCTCTTAAATAAGAAATGAAGACATGCTCAGAGAGGATAATAGT 1168
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1135 TCTGAGTTTTGACAATCCTCTTAAATAAGAAATGTAGACATGCTCAGAGAGGATAATAGT 1194
Query 1169 TAAAAAGATATCAGGACACAGGAGAAACTCAATGTAATAATATTTTAGCTAGGGAATGT- 1227
|||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1195 TAAAAAGAGATAAGGACACAGGAGAAACTCAATGTAATAATATTT-AGATAGGGAATGTT 1253
Query 1228 -CT--ACTACACAATAATGTAAACAAAA-TGTGTG--AATATACCCAACAAAATAATGTA 1281
|| |||||||||||||||||| |||| |||||| |||||||| |||||| |||||||
Sbjct 1254 ACTCTACTACACAATAATGTAAAAAAAAATGTGTGTGAATATACC-AACAAA-TAATGTA 1311
Query 1282 AATAATGCTTTTCATAGCACTCCATCTGTAAGATATTTTAGATAA-TAAAATTTGAGTTT 1340
||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1312 AATAATGCTTT-CATAGCACTCCGTCTGTAAGATATTTTAGATAAATAAAATTTGAGTTT 1370
Query 1341 CTATT 1345
|||||
Sbjct 1371 CTATT 1375
Score = 73.1 bits (39), Expect = 6e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 TACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCtt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 1 TACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCTT 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5