BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478153
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08550.1 | Symbols: ELD1, ABI8, KOB1 | elongation defective ... 3160 0.0
> AT3G08550.1 | Symbols: ELD1, ABI8, KOB1 | elongation defective
1 protein / ELD1 protein | chr3:2596406-2599819 FORWARD LENGTH=2013
Length=2013
Score = 3160 bits (1711), Expect = 0.0
Identities = 1912/2006 (95%), Gaps = 25/2006 (1%)
Strand=Plus/Plus
Query 1 CACaaaaataaaataaaaaGAAAGATCTCAGAATCGCGtctttcttcttcttc-t--tc- 56
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 CACGAAAATAAAATAAAAAGAAAGATCTCAGAATCGCGTCTTTCTTCTTCTTCTTCGTCT 60
Query 57 t-tt--t--g--------tttt-tttttCAAATTCGTGGAGCTAACCATGAAATCGACTC 102
| || | | |||| ||||||||| | |||||||||||||||||||||||||
Sbjct 61 TCTTCCTCCGAAACTTTTTTTTGTTTTTCAAAGTGGTGGAGCTAACCATGAAATCGACTC 120
Query 103 ACCATCACAGAGCTCCACTGATTTCTGCTTCTTCCTCATCTTCATCCTCTTCCCAAAACC 162
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 121 ACCATCACAGAGCTCCACTAATATCTGCTTCTTCCTCATCTTCATCTTCTTCCCAAAACC 180
Query 163 ATTCTTTTGTCTCTAGGCTCCTCCTTCTCCTTACTTTACTTCCAGTTTCCCTTGCTTGTC 222
|||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 ATTCATTCGTCTCTAGGCTCCTCCTTCTCCTTACTCTACTTCCAGTTTCCCTTGCTTGTC 240
Query 223 TCGCCTTTATCCTCCAATGGCGAGGCGGTGGTCTCGCCGATCCTGCCTCTGCTTCTGTTC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGCCTTTATCCTCCAATGGCGAGGCGGTGGTCTCGCCGATCCTGCCTCTGCTTCTGTTC 300
Query 283 GTTCATCTACGTCGGTTCCTGGCGGCTCCGATCTCAATCACGAGGTGTTTCCCGGCATGG 342
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GTTCCTCTACGTCGGTTCCTGGCGGCTCCGATCTCAATCACGAGGTCTTTCCCGGCATGG 360
Query 343 AGACTGTTTCTTCTGTCTCCCCAAAGTCTCACCAATCGTCCTCCGACTGCTCAAATCTAG 402
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 AGACTGTTTCATCTGTCTCCCCAAAGTCTCACCAATCCTCCTCCGACTGCTCAAATCTAG 420
Query 403 CTCGCAGCTCTTCTCCTTCCTTTCCTTACTATGGTGATTGGAAGTTTGGTGTTGATACTA 462
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 CTCGCAGCTCTTCTCCTTCTTTTCCTTACTATGCTGATTGGAAGTTTGGTGTTGATACTA 480
Query 463 GTTTAAAGCCTAAGATATGTATTACGACTAGCACGTCAGCTGGATTGGATCAGATTCTAC 522
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 481 GCTTAAAGCCTAAGATATGTATCACGACTAGCACATCAGCTGGATTGGATCAGATTCTAC 540
Query 523 CATGGATGTTCTACCATAAGGTTCTAGGAGTCTCTACATTCTTCCTTTTCGTAGAAGGGA 582
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 541 CATGGATGTTCTACCATAAGGTTCTAGGCGTCTCAACATTCTTCCTTTTCGTTGAAGGGA 600
Query 583 AAGCTGCTACTCCGAGTATTTCTAAAGTGCTGGAGTCTATTCCTGGGGTTAAAGTAATAT 642
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 601 AAGCTGCTACTCCGAGTATTTCTAAAGTGCTCGAGTCTATTCCTGGTGTTAAAGTAATAT 660
Query 643 ACAGGACGAAAGAGCTTGAGGAGAAGCAAGCAAAGAGCCGGATTTGGAATGAGACTTGGC 702
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 661 ACAGGACGAAAGAGCTTGAGGAGAAGCAAGCGAAGAGCCGGATTTGGAATGAGACCTGGC 720
Query 703 TATCGTCTTTCTTTTATAAGCCCTGCAATTATGAGTTATTTGTCAAACAATCTCTCAACA 762
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTCGTCTTTCTTTTATAAGCCCTGCAATTATGAGTTATTTGTCAAACAATCTCTCAACA 780
Query 763 TGGAAATGGCTATTGTCATGGCAAGGGATGCGGGCATGGATTGGATACTTCATCTGGACA 822
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 781 TGGAAATGGCTATTGTCATGGCTAGGGATGCGGGCATGGATTGGATACTTCATCTTGACA 840
Query 823 CAGATGAGCTAATATACCCAGCAGGTGCTCGTGAGTACTCACTGAGACGGTTGCTGCTTG 882
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 CTGATGAGCTGATATACCCAGCAGGTGCTCGTGAGTACTCACTAAGACGGTTGCTGCTTG 900
Query 883 ATGTTCCTCCAAATGTGGATATGGTTATATTTCCAAATTACGAAAGCAGCGTAGAAAGAG 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGTTCCTCCAAATGTGGATATGGTTATATTTCCAAATTACGAAAGCAGCGTAGAAAGAG 960
Query 943 ATGATATCAAGGATCCTTTTACAGAGGTGTCAATGTTCAAGAAGAATTATGATCATCTTC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGATATCAAGGATCCTTTTACAGAGGTGTCAATGTTCAAGAAGAATTATGATCATCTTC 1020
Query 1003 CAAAAGATACATATTTTGGAATGTACAAAGAAGCAACACGAAATAATCCAAATTACTTCT 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 CAAAAGATACATATTTTGGAATGTACAAAGAAGCAACACGAAATAATCCAAATTACTTTT 1080
Query 1063 TGACTTATGGTAACGGCAAATCAGTTGCTCGGGTTCAAGATCACCTTCGTCCAAATGGAG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGACTTATGGTAACGGCAAATCAGTTGCTCGGGTTCAAGATCACCTTCGTCCAAATGGAG 1140
Query 1123 CACACAGATGGCATAATTACATGAAAACTCCCAATGAAATCAAATTGGAGGAGGCTGCTG 1182
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 CACACAGATGGCATAATTACATGAAAACTCCCAATGAGATCAAATTGGAGGAGGCTGCTG 1200
Query 1183 TCCTACACTACACATATGCAAAATTTTCTGACTTAACATCCAGGCGTGATCGATGTGGCT 1242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCCTACACTACACATATTCAAAATTTTCTGACTTAACATCCAGGCGTGATCGATGTGGCT 1260
Query 1243 GCAAGCCTACAAAAGAAGACGTGAAAAGATGCTTTATGTTGGACTTTGATAGATCTGCAT 1302
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 GTAAGCCTACAAAAGAAGACGTGAAAAGATGCTTTATGTTGGACTTTGACAGATCTGCAT 1320
Query 1303 TTATAATTGCGTCAACAGCAACTGAAGAAGAAATGTTAAGCTGGTACCGTGAACATGTTG 1362
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1321 TTATAATTGCGTCAACAGCAACTGACGAAGAAATGCTAAGCTGGTACCGTGAACACGTTG 1380
Query 1363 TGTGGGGCGACAAAGAGGTGAAGACGAAACTCCTTAGGAAGGGTATTCTGACTCGCATCT 1422
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGTGGGGTGACAAAGACGTGAAGACGAAACTCCTTAGGAAGGGTATTCTGACTCGCATCT 1440
Query 1423 ATTCACCAATGGTTGTTATACAAGCATTGAAAGAATCTGGTGTCTTTAGCTCGGTTGTCT 1482
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1441 ATTCACCAATGGTTGTTATACAAGCATTGAAAGAATCTGGTGTCTTCAGCTCGGTTGTCT 1500
Query 1483 CATCAG-TGTCTACAAATCTTTCAAAGAAAAAGTTCTTATCATCAATTCACAAAAGCAAC 1541
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CATCAGCT-TCTACAAATCTGTCAAAGAAAAAGTTCTTATCATCAATTCACAAAAGCAAC 1559
Query 1542 TCATCCAGGTCTACTGCATCTGAGTCCCTTCCATCAAAGGAAAACAAGTCTGAAGGCATC 1601
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1560 TCATCCAGGTCTACTGCATCTGAGTCCCTTCCATCAAAGGAAAGCAAGTCTGAGGGCATC 1619
Query 1602 TCTGCAAGGCACCTTCTTGGGGATGAATCAGCCATCCCTCCTTTATCGCCACCTGGGATG 1661
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCTGCAAGGCACCTTCTTGAGGCTGAATCAGCCATCCCTCCTTTATCGCCACCTGGGATG 1679
Query 1662 GAACACGCTAGATTTATCACAGAGGATTAACAGGTTTTAGCATTGAGCTGATGCATTCGC 1721
||||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1680 GAACAAGCTAGATTTTTTACAGAGGATTAACAGGTTTTAGCACGGAGCTGATGCATTCGC 1739
Query 1722 TTTTACAGATATTGATACTGGGTACAATATGAGTACTGTGTAGCTTTAGGAAGGCAAGTG 1781
|||||| |||||||||||||| | |||||||||| |||||||||||||||| ||||| ||
Sbjct 1740 TTTTACTGATATTGATACTGGTTGCAATATGAGTGCTGTGTAGCTTTAGGATGGCAAATG 1799
Query 1782 AAGTGGAACATAGAAGAACGAAGAAAGCAGG-TTTGTGCGATTCTTCCCAATCATCTTGA 1840
|||||||||| |||||| ||||||||| || |||||| ||||||||| |||||| ||||
Sbjct 1800 AAGTGGAACAAAGAAGAGTGAAGAAAGC-GGCTTTGTGTGATTCTTCCTAATCATATTGA 1858
Query 1841 AA-GACATCGGTTCTCTTATCTCATTTTGCTCTCCCTCTGCAACTTATGATAGATGAGTT 1899
|| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AAAGTCATCGATTCTCTTGTCTCATTTTGCTCTCCCTCTGCAACTTATGATAGATGAGTT 1918
Query 1900 TGCAGCATTTTTCTGTTGTCATTGTTATTTCTATGTAAGTTTATTACTATGTACAGAACT 1959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1919 TGCAGCATTTTTCTGTTGTCATTGTTACTTCTATGTAAGTTTATTACTATGTACAGAACT 1978
Query 1960 TCAAAGCACAGAGGCCT-GGAATCAT 1984
||||||||||||| ||| ||| ||||
Sbjct 1979 TCAAAGCACAGAG-CCTTGGACTCAT 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98292667110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5