BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478155
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08570.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2760 0.0
> AT3G08570.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:2602258-2604412 REVERSE LENGTH=1854
Length=1854
Score = 2760 bits (1494), Expect = 0.0
Identities = 1676/1767 (95%), Gaps = 0/1767 (0%)
Strand=Plus/Plus
Query 68 ATATTCTCAGACGTTGCGGGTGACATCACAATCGTTGTTGATGGAGAGTCCTTTTTACTC 127
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 88 ATATTCTCAGATGTTGCGGGAGACATCACAATTGTTGTTGATGGAGAGTCCTTTTTACTC 147
Query 128 CACAAGTTTCCTCTGGTGGCTCGGTGTGGAAAGATTAGGAAAATGGTGGCAGAGATGAAG 187
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CACAAGTTTCCTTTAGTGGCTCGGTGTGGAAAGATTAGGAAAATGGTGGCAGAGATGAAA 207
Query 188 GAATCATCTTCAAACCTCTCGCATACAGAGCTACGAGACTTTCCAGGTGGGTCTAGGACG 247
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 208 GAATCATCTTCAAATCTCTCGCATACAGAGCTCCGAGACTTTCCAGGTGGGTCTAAGACG 267
Query 248 TTTGAACTCGCCATGAAGTTCTGCTACGGCATCAACTTCGAGATCACTATCTCCAACGTG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TTTGAACTCGCCATGAAGTTCTGCTACGGCATCAACTTCGAGATCACTATCTCCAACGTG 327
Query 308 GTTGCTATCCGTTGCGCAGCTGGTTATCTCGAGATGACAGAGGGCTTTAAAGAAGAGAAT 367
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 328 GTTGCTATCCGTTGCGCAGCTGGTTATCTTGAGATGACAGAGGACTTCAAAGAAGAGAAT 387
Query 368 TTGATCGCACGGACTGAGACTTACCTCGAGCAAGTCGCGTTTCGCAGTCTTGAGAAGTCT 427
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTGATTGCGCGGACCGAGACTTACCTCGAGCAAGTCGCGTTTCGCAGTCTTGAGAAGTCT 447
Query 428 GTGGAAGTTCTCTGTTCCTGTGAAACGCTTCATCCTCAAGACATTGCTGAAACTGCCCGC 487
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| | |
Sbjct 448 GTGGAAGTCCTCTGTTCCTGTGAGACGCTTTATCCTCAAGACATTGCTGAAACTGCTCAC 507
Query 488 ATTCCTGAAAGATGCGTGGAGGCCATCGCTGTGAATGCTTGCAGAGAACAGTTAGTTTTG 547
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 508 ATTCCTGATAGATGTGTGGAGGCTATCGCTGTGAATGCTTGCAGAGAACAGTTAGTGTTA 567
Query 548 GGGCTATCGCGGCTGAACCGAGGCAACGAGTCAGCGGAAGTCAACCGAGGAGATAGTCCT 607
||||| || |||||||||||||||| |||||||| |||| |||| |||||||||||||||
Sbjct 568 GGGCTGTCACGGCTGAACCGAGGCACCGAGTCAGGGGAACTCAAGCGAGGAGATAGTCCT 627
Query 608 GAGTGGTGGATTGAAGACCTCTCTGCTCTGAGGATTGACTATTACGCACGAGTTGTCTCT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GAGTGGTGGATTGAAGACCTCTCTGCTCTGAGGATTGACTATTACGCACGAGTTGTCTCT 687
Query 668 GCGATGGCTAGAACAGGCTTGCGGTCAGAGAGTATCATAACGTCTCTGATGCATTACGCT 727
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 688 GCGATGGCTAGAACAGGCTTGCGGTCAGAGAGTATCATAACGTCTTTGATGCATTACGCT 747
Query 728 CAAGAATCGTTGAAAGGTATTCGAAACTGCAATGAGCGAACCAAGCTCGATTCAGGTACA 787
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 748 CAAGAATCGTTGAAAGGTATTCGAAACTGCAAGGAGCGAACCAAGCTCGATTCGGGTACT 807
Query 788 ATTGAGAATGAACAGAGGAACGTCATTGAAGCCATTGTTAGTCTTTTCCCGAATGACAAA 847
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 808 TTTGAGAATGAACAGAGGAACGTCCTTGAAGCCATTGTTAGTCTTTTCCCAAATGACAAT 867
Query 848 GTTCCTCTGAGTTTCCTCTTCGGAATGTTGAGGGTTGGGATTACTATAAACGTAGCCATC 907
|| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 868 GTCCCTCTGAGTTTCCTCTTTGGAATGTTGAGGGTCGGGATTACCATAAACGTAGCCATC 927
Query 908 TCTTGCAGGCTCGAGCTCGAGCGGAGAATCGCTCAGCAGCTGGAAACAGTCTCTCTCGAT 967
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 928 TCTTGCAGGCTCGAGCTCGAGCGGAGAATCGCTCAGCAGCTGGAAACAGTCTCCCTCGAT 987
Query 968 GATCTACTCATACCTGTTGTCCAAGAAGGTGATTCCATGTATGATGTGGACACTGTCCAT 1027
|||||||||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||
Sbjct 988 GATCTACTCATACCTGTTGTCCGAGACGGAGATTCCATGTACGATGTAGACACTGTCCAT 1047
Query 1028 AGAATACTCGTCTGCTTTCTGAAGAAAATAAAGGAGGAAGAAGAATATGACGAAGATTGC 1087
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1048 AGAATACTCGTCTGCTTTCTGAAGAAAATAGAGGAGGAAGAAGAATATGATGAAGATTGC 1107
Query 1088 TGTTACGAGAACGAGACCGAGAATCTTATTGGTTCTACGTGCCACAGCTCATTGCTGAAA 1147
|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 1108 TGTTACGAGAACGAGACCGAGAATCTTACTGGTTCTATGTGCCACAGTTCATTGCTGAAA 1167
Query 1148 GTGGGTCGGATCATGGATGCATACTTGGCAGAGATTGCACCAGACCCGTGTCTGAGTCTC 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GTGGGTCGGATCATGGATGCATACTTGGCAGAGATTGCACCAGACCCGTGTCTGAGTCTT 1227
Query 1208 CACAAGTTCATGGCTTTGATAGAGATATTGCCTGATTACGCACGTGTCATGGATGATGGG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CACAAGTTCATGGCTTTGATAGAGATATTGCCTGATTACGCACGTGTCATGGATGATGGG 1287
Query 1268 CTATACAGAGCCATTGATATGTTTCTAAAGGGGCATCCCTCGCTGAACGAACAAGAATGT 1327
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1288 CTATACAGAGCCATTGATATGTTTCTAAAGGGGCATCCGTCGCTGAACGAACAAGAATGT 1347
Query 1328 CAGAGTCTCTGCAAATTCATAGACACTCAGAAACTCTCACAAGAAGCATGCAACCATGTG 1387
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1348 AAGAGTCTCTGCAAATTCATAGACACTCAGAAACTTTCACAAGAAGCATGCAACCATGTG 1407
Query 1388 GCTCAGAATGATCGGCTACCGGTGCAGATGGTGGTTCGAGTTCTCTACTCGGAACAACTG 1447
|||||||| |||||||| ||| ||||||||||||| ||||| |||||||| ||||| |||
Sbjct 1408 GCTCAGAACGATCGGCTGCCGATGCAGATGGTGGTCCGAGTCCTCTACTCAGAACAGCTG 1467
Query 1448 CGGATGAAGAATGTTGTGTCCGGAGAGTCAGGGGATGGGTTATTGTTGTCGTCTCAGAAA 1507
|| ||||||||||| ||||||||||||||||||| ||| ||||| |||| |||||||||
Sbjct 1468 CGTATGAAGAATGTAATGTCCGGAGAGTCAGGGGAAGGGCTATTGCTGTCTTCTCAGAAA 1527
Query 1508 CTTAGTAGCGGGAACCCGAGCGGAGCTGTGTCTCCGAGAGACACTTATGCATCGCTGAGG 1567
| |||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 1528 CATAGTAGCGAGAACCCGAGCCGAGCTGTGTCTCCGAGAGACACTTATGCCTCACTGAGG 1587
Query 1568 CGGGAGAATAGAGAGCTGAAGCTGGAGATCTCGAGGGTGAGAGTGAGACTGACCGAGTTA 1627
|||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||
Sbjct 1588 AGGGAGAATAGAGAGCTGAAGCTGGAGATTTCAAGGGTGAGAGTGAGGCTGACTGAGTTG 1647
Query 1628 GAGAAGGAGCAGATTTTGATGAAACAGGGGATGATGGAGAAGTCAGGTCATGGTGGAACA 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GAGAAGGAGCAGATTTTGATGAAACAGGGGATGATGGAGAAGTCAGGTCATGGTGGAACA 1707
Query 1688 TTGCTGACCTCGCTTTCCAAAGGGATTGGGAGGATTTCTATATTTGGTGGAGGACCTACA 1747
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1708 TTGCTGACCTCACTTTCCAAAGGGATTGGGAGGATTTCGATATTTGGTGGAGGACCTACA 1767
Query 1748 GAAGAGAAGCTGCGGAAGGCTAACCGCAAATCTAGGTCGAGGTTGGAGAGAAAAACAGTT 1807
|||| |||||||||||| |||||||||||||| | ||| ||||||||||||||||| |||
Sbjct 1768 GAAGGGAAGCTGCGGAATGCTAACCGCAAATCCAAGTCAAGGTTGGAGAGAAAAACCGTT 1827
Query 1808 AGGAGCCGACCAGAGTCTATGTTTTAG 1834
|||||||||||||||||||||||||||
Sbjct 1828 AGGAGCCGACCAGAGTCTATGTTTTAG 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90762585360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5