BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478159
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08590.1 | Symbols: | Phosphoglycerate mutase, 2,3-bisphosp... 2935 0.0
AT1G09780.1 | Symbols: | Phosphoglycerate mutase, 2,3-bisphosp... 1500 0.0
> AT3G08590.1 | Symbols: | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
| chr3:2608471-2611418 REVERSE LENGTH=1986
Length=1986
Score = 2935 bits (1589), Expect = 0.0
Identities = 1762/1845 (96%), Gaps = 13/1845 (1%)
Strand=Plus/Plus
Query 170 GTTATGGGTAGCTCCGGCGACGTTAACTGGAAACTTGCGGACCACCCCAAGCTTCCCAAA 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 GTTATGGGTAGCTCCGGCGACGTTAACTGGAAACTTGCGGACCACCCCAAGCTTCCCAAA 148
Query 230 GGCAAAACCATCGGTTTAATTGTTCTTGATGGATGGGGTGAATCTGATCCTGATCAATAC 289
|||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 149 GGCAAAACTATCGGTTTGATTGTTCTCGATGGATGGGGTGAATCTGATCCCGATCAATAC 208
Query 290 AATTGCATCCATAAAGCTCCAACTCCTGCCATGGATTCCCTTAAAAAC-GGAAGACCCGA 348
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 209 AATTGCATCCATAAAGCTCCAACTCCTGCCATGGATTCCCTTAAAGACGGGAAG-CCCGA 267
Query 349 CACATGGAGGCTGATCAAAGCCCACGGTACTGCCGTTGGCCTCCCCAGCGAAGACGACAT 408
|||||||||| |||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 268 CACATGGAGGTTGATCAAAGCTCATGGTACCGCCGTTGGTCTCCCCAGCGAAGACGACAT 327
Query 409 GGGAAACAGTGAAGTTGGCCACAATGCTCTCGGAGCTGGTCGAATTTACGCTCAAGGTGC 468
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 328 GGGAAACAGTGAAGTTGGCCACAATGCTCTTGGAGCTGGTCGAATTTACGCTCAAGGTGC 387
Query 469 TAAGCTTGTTGATCTCGCTCTTGCTTCTGGGAAAATCTATGAAGATGAAGGCTTCAAATA 528
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 388 TAAGCTTGTTGATCTCGCCCTTGCTTCAGGGAAAATCTATGAAGATGAAGGTTTCAAATA 447
Query 529 CATCTCTCAATCTTTTGAGAAAGGCACTGTGCACCTTATTGGTCTTCTAAGCGATGGTGG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CATCTCTCAATCTTTTGAGAAAGGCACTGTGCACCTTATTGGTCTTCTAAGCGATGGTGG 507
Query 589 AGTTCACTCTCGTCTGGATCAAGTCCAGTTGCTGCTTAAGGGTTTTGCAGAACGAGGTGC 648
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 508 AGTTCACTCTCGTTTGGATCAAGTCCAGTTGCTGCTTAAGGGTTTTGCAGAACGTGGTGC 567
Query 649 TAAGAGAATCCGCGTCCATATTCTTACTGATGGGCGTGATGTTTTGGATGGTTCTAGTGT 708
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 568 TAAGAGAATCCGCGTCCATATTCTTACTGATGGTCGTGATGTTTTGGATGGTTCTAGTGT 627
Query 709 CGGATTTGTTGAAACTCTTGAAGCTGACCTCGCTGCTTTGCGTTCGAAAGGTGTTGACGC 768
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||
Sbjct 628 CGGATTTGTTGAAACTCTTGAAGCTGACCTAGCTGCTTTACGTGCGAAAGGTGTTGATGC 687
Query 769 TCAGGTTGCATCTGGTGGTGGTCGTATGTATGTCACAATGGACCGTTATGAGAATGATTG 828
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 688 TCAGGTTGCATCTGGTGGAGGTCGAATGTATGTCACAATGGACCGTTATGAGAATGATTG 747
Query 829 GAGTGTTGTTAAACGAGGTTGGGATGCACAAGTACTTGGAGAAGCTCCCCACAAATTCAA 888
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 748 GAGTGTTGTTAAACGAGGTTGGGATGCACAAGTCCTTGGGGAAGCTCCCCACAAATTTAA 807
Query 889 AAGTGCTCTTGAAGCAGTTAAGACACTGAGGGCCGAACCTGGTGCCAATGACCAGTATTT 948
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 808 AAGCGCTCTTGAAGCAGTTAAGACACTGAGGGCAGAACCTGGTGCCAATGACCAGTATTT 867
Query 949 ACCTCCTTTTGTTATTGTTGATGATAGTGGAAAGGCTGTGGGTCCAATTGTTGATGGTGA 1008
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 868 GCCTTCGTTTGTTATTGTTGATGATAATGGAAAGGCTGTGGGTCCAATTGTTGATGGTGA 927
Query 1009 CGCAGTTGTGACATTCAATTTCCGTGCTGATCGAATGGTCATGCATGCAAAGGCCCTTGA 1068
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 928 CGCAGTTGTTACATTCAATTTCCGTGCTGATCGAATGGTCATGCATGCAAAGGCCCTCGA 987
Query 1069 ATATGAAGATTTCGATAAGTTTGATCGCGTACGAGTCCCTAAGATACGTTATGCAGGAAT 1128
||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 988 ATACAAAGATTTCGACAAGTTTGATCGCGTACGTGTCCCTGATATACGTTATGCAGGAAT 1047
Query 1129 GCTCCAATATGATGGAGAGCTTAAGCTTCCTAGCCGCTATCTTGTTTCCCCACCATTGAT 1188
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1048 GCTCCAATATGATGGAGAGCTTAAGCTTCCTAGCCGCTATCTTGTTTCTCCACCATTGAT 1107
Query 1189 TGATAGAACTTCTGGTGAATATCTGGCACACAATGGCGTTCGTACTTTTGCTTGCAGTGA 1248
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TGACAGAACTTCTGGTGAATATCTGGCACACAATGGCGTTCGTACTTTTGCTTGCAGTGA 1167
Query 1249 GACTGTAAAGTTTGGCCATGTAACCTTCTTTTGGAATGGCAACCGCTCTGGATATTTCAA 1308
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1168 GACTGTGAAGTTTGGCCATGTAACCTTCTTCTGGAATGGCAACCGCTCTGGATATTTCAA 1227
Query 1309 TGAAAAGTTAGAAGAGTATGTTGAGATTCCAAGTGATAGTGGAATATCATTCAATGTCCA 1368
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TGAAAAGTTAGAAGAGTACGTTGAGATTCCAAGTGATAGTGGAATATCATTCAATGTCCA 1287
Query 1369 GCCAAAGATGAAAGCTCTGGAAATTGCCGAGAAGGCTAGGGATGCTATCCTTAGTGGCAA 1428
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1288 GCCAAAGATGAAAGCACTGGAAATTGCCGAGAAAGCAAGGGATGCTATCCTTAGTGGCAA 1347
Query 1429 GTTTGACCAGGTGCGTGTCAACCTGCCAAATGGAGATATGGTGGGTCATACTGGTGATAT 1488
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1348 GTTTGACCAGGTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATAT 1407
Query 1489 TGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGACAATCCTTGATGC 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGACAATCCTTGATGC 1467
Query 1549 CATAGAACAGGTAGGAGGGATATACGTTGTGACTGCAGATCACGGAAATGCCGAGGACAT 1608
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1468 CATAGAACAGGTCGGAGGGATATACGTTGTGACTGCAGATCACGGAAATGCTGAGGACAT 1527
Query 1609 GGTTAAAAGGGACAAATCCGGCAAGCCAGCTCTCGATAAGGAAGGGAACCTTCAGATTCT 1668
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1528 GGTTAAAAGGGACAAATCCGGCAAGCCTGCTCTCGATAAGGAAGGGAACCTTCAGATTCT 1587
Query 1669 CACCTCTCACACCCTTAAACCAGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGG 1728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TACCTCTCACACCCTTAAACCAGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGG 1647
Query 1729 AGTTAGGTTCAGACAGGATATCGAGACACCTGGGCTTGCGAATGTAGCTGCGACAGTGAT 1788
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1648 AGTTAGGTTTAGACAGGATATCGAGACACCTGGGCTTGCAAATGTAGCTGCGACAGTGAT 1707
Query 1789 GAACCTCCATGGCTTTGTAGCCCCG-GACGATTATGAGACAAGTCTGATTGAAGTTGTCG 1847
|||||||||||| ||||| |||||| | || ||||||||||||||||| ||||| ||||
Sbjct 1708 GAACCTCCATGGATTTGTGGCCCCGAGT-GACTATGAGACAAGTCTGATCGAAGTCGTCG 1766
Query 1848 ACAAGTGATGATTCTTGTTGTTGTAGTTCCCTTTAAAT-TCCCACCTGAGCCTCTCTAGT 1906
| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 1767 AGAAGTGATGATTCTTGTTGTTGTAGTTCTTTTTAAAAGTCCCACCTGAGCCTCTATAGA 1826
Query 1907 CTCTGATCCTCTTTTAAAGTTACTATTTTCACCGCTCTCTAATAAGGCTCGTGATTTTTG 1966
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 CTCTGATTCTCTTTTAA-GTTACTATTTTCACCGCTCTCTAATAAGGCTCGTGATTTTTT 1885
Query 1967 GGGAGCCATACT-----C--GCCGGCCCTCTCACGATGTTGTTCA 2004
|||||||||||| | |||||||||||||||||||||||||
Sbjct 1886 GGGAGCCATACTGTATACTCGCCGGCCCTCTCACGATGTTGTTCA 1930
> AT1G09780.1 | Symbols: | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
| chr1:3165370-3167869 REVERSE LENGTH=1911
Length=1911
Score = 1500 bits (812), Expect = 0.0
Identities = 1378/1652 (83%), Gaps = 36/1652 (2%)
Strand=Plus/Plus
Query 209 GACCACCCCAAGCTTCCCAAAGGCAAAACCATCGGTTTAATTGTTCTT-GATGGATGGGG 267
|||||||||||||| ||||| || || ||||||| |||| | |||| ||||| |||||
Sbjct 88 GACCACCCCAAGCTCCCCAAGGGTAAGACCATCGCCGTAATCG-TCTTAGATGGTTGGGG 146
Query 268 TGAATCTGATCCTGATCAATACAATTGCATCCATAAAGCTCCAACTCCTGCCATGGATTC 327
|||||||| |||||||| ||||| || ||||| || ||||||||||| |||||||||||
Sbjct 147 TGAATCTGCCCCTGATCAGTACAACTGTATCCACAACGCTCCAACTCCAGCCATGGATTC 206
Query 328 CCTTAAAAACGGAAGAC-CC-GACACATGGAGGCTGATCAAAGCCCACGGTACTGCCGTT 385
|||||| | || || | || || || |||| |||||||||| ||||||||||| ||
Sbjct 207 TCTTAAACATGG-AG-CTCCTGATACTTGGACTTTGATCAAAGCTCACGGTACTGCTGTA 264
Query 386 GGCCTCCCCAGCGAAGACGACATGGGAAACAGTGAAGTTGGCCACAATGCTCTCGGAGCT 445
|| || || || ||||| || |||||||||||||| ||||| || |||||||| || |||
Sbjct 265 GGACTTCCTAGTGAAGATGATATGGGAAACAGTGAGGTTGGTCATAATGCTCTTGGTGCT 324
Query 446 GGTCGAAT-TTACGCTCAAGGTGCTAAGC-TTGTTGATCTCGCTCTTGCTTCTGGGAAAA 503
||||| || || |||||||||||||||| ||| ||| | |||||||||||||| ||||
Sbjct 325 GGTCGTATCTT-TGCTCAAGGTGCTAAGCTTTG-TGACCAAGCTCTTGCTTCTGGCAAAA 382
Query 504 TCTATGAAGATGAAGGCTTCAAATACATCTCTCAATCTTTTGAGAAAG-GCACTGTGCAC 562
||| ||||| |||||| || |||||| | ||| ||||||| ||| | | ||| ||||
Sbjct 383 TCTTTGAAGGTGAAGGTTTTAAATACGTTTCTGAATCTTTCGAG-ACGAATACTTTGCAT 441
Query 563 CTTATTGGTCTTCTAAGCGATGGTGGAGTTCACTCTCGTCTGGATCAAGTCCAGTTGCTG 622
||| |||| ||||| || || |||||||||||||||||||| |||||| | |||||| ||
Sbjct 442 CTTGTTGGACTTCTCAGTGACGGTGGAGTTCACTCTCGTCTCGATCAACTACAGTTGTTG 501
Query 623 CTTAAGGGTTTTGCAGAACGAGGTGCTAAGAGAATCCGCGTCCATATTCTTACTGATGGG 682
|||| || | ||| ||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 502 ATTAAAGGATCTGCTGAACGTGGTGCTAAGAGAATCAGAGTCCATATTCTTACTGATGGT 561
Query 683 CGTGATGTTTTGGATGGTTCTAGTGTCGGATTTGTTGAAACTCTTGAAGCTGACCTCGCT 742
|||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||| |
Sbjct 562 CGTGATGTTTTGGATGGTTCTAGTGTTGGATTTGTGGAAACCCTTGAAGCCGACCTCGTT 621
Query 743 GCTTTGCGTTCGAAAGGTGTTGACGCTCAGGTTGCATCTGGTGGTGGTCGTATGTATGTC 802
|| || ||| ||| ||||| || |||||| ||||||||||||| || |||||||||||
Sbjct 622 GCATTACGTGAGAATGGTGTGGATGCTCAGATTGCATCTGGTGGAGGACGTATGTATGTG 681
Query 803 ACAATGGACCGTTATGAGAATGATT-GGAGTGTTGTTAAACGAGGTTGGGATGCACAAGT 861
|| ||||||| ||||||||||||| ||| ||||||||| ||||||||||||| |||||
Sbjct 682 ACTTTGGACCGATATGAGAATGATTGGGA-AGTTGTTAAAAGAGGTTGGGATGCTCAAGT 740
Query 862 ACTTGGAGAAGCTCCCCACAAATTCAAAAGTGCTCTTGAAGCAGTTAAGACACTGAGGGC 921
|||||||||||||| ||||||||||||| ||| ||||||| || ||||| |||||
Sbjct 741 TCTTGGAGAAGCTCCTCACAAATTCAAAAACGCTGTTGAAGCTGTGAAGACTTTGAGGAA 800
Query 922 CGAACCTGGTGCCAATGACCAGTATTTACCTCCTTTTGTTATTGTTGATG-AT-AGTGGA 979
|| |||||||| |||||||||||||| || || ||||| |||||||||| || || |||
Sbjct 801 AGAGCCTGGTGCTAATGACCAGTATTTGCCCCCGTTTGTGATTGTTGATGAATCAG-GGA 859
Query 980 AAGGCTGTGGGTCCAATTGTTGATGGTGACGCAGTTGTGACATTCAATTTCCGTGCTGAT 1039
|| || || ||||| ||||| || ||||| || ||||| || ||||| ||| | ||||||
Sbjct 860 AA-GCAGTTGGTCCGATTGTGGACGGTGATGCTGTTGTTACCTTCAACTTCAGGGCTGAT 918
Query 1040 CGAATGGTCATGCATGCAAAGGCCCTTGAATATGAAGATTTCGATAAGTTTGATCGCGTA 1099
|| ||||| |||||||| ||||| ||||| || |||||||| || || ||||| | |||
Sbjct 919 CGTATGGTTATGCATGCTAAGGCACTTGAGTACGAAGATTTTGACAAATTTGA-C-CGTG 976
Query 1100 CGA-GT-CCCTAAGATACGTTATGCAGGAATGCTCCAATATGATGGAGAGCTTAAGCTTC 1157
|| || ||| ||||| |||||||| || ||||| || |||||||||||||||||||| |
Sbjct 977 TGAGGTACCCAAAGATTCGTTATGCTGGTATGCTTCAGTATGATGGAGAGCTTAAGCTAC 1036
Query 1158 CTAGCCGCTATCTTGTTTC-CCCACCATTGATTGATAGAACTTCTGGTGAATATCTGGCA 1216
| ||||| || |||||||| ||| || |||||||||||| |||||||||||| || |
Sbjct 1037 CAAGCCGTTACCTTGTTTCTCCC-CCGGAGATTGATAGAACATCTGGTGAATATTTGACT 1095
Query 1217 CACAATGGCGTTC-GTACTTTTGCTTGCAGTGAGACTGTAAAGTTTGGCCATGTAACCTT 1275
|||||||||| || |||||||||||||||||||||| || |||||||| ||||| |||||
Sbjct 1096 CACAATGGCG-TCAGTACTTTTGCTTGCAGTGAGACCGTCAAGTTTGGGCATGTCACCTT 1154
Query 1276 CTTTTGGAATGGCAACCGCTCTGGATATTTCAATGA-AAAGTTAGAAGAGTATGTTGAGA 1334
||| |||||||| || || |||||||||||||| || ||| || || ||||||||||| |
Sbjct 1155 CTTCTGGAATGGAAATCGATCTGGATATTTCAACGAGAAA-TTGGAGGAGTATGTTGAAA 1213
Query 1335 TTCCAAGTGATAGTGGAATATCATTCAATGTCCAGCCAAAGATGAAAGCTCTGGAAATTG 1394
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TCCCAAGTGACAGTGGAATATCATTCAATGTCCAGCCAAAGATGAAAGCTCTGGAAATTG 1273
Query 1395 CCGAGAAGGCTAGGGATGCTATCCTTAGTGGCAAGTTTGACCAGGTGCGTGTCAACCTGC 1454
|||||||| |||||||| |||||||||||||||||||| |||||||| || ||| | |
Sbjct 1274 GTGAGAAGGCAAGGGATGCAATCCTTAGTGGCAAGTTTGATCAGGTGCGAGTTAACATTC 1333
Query 1455 CAAATGGAGATATGGTGGGTCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAG 1514
||||||||||||||||||||||||| |||||||||||||| || |||||||| || || |
Sbjct 1334 CAAATGGAGATATGGTGGGTCATACAGGTGATATTGAAGCCACGGTTGTTGCATGCGAGG 1393
Query 1515 CTGCTGATCGTGCTGTGAGGACAATCCTTGATGCCATAGAACAGGTAGGAGGGA-TATAC 1573
||||||||| |||||||| || || ||||||| || ||||| || | | ||| | ||
Sbjct 1394 CTGCTGATCTTGCTGTGAAGATGATTTTTGATGCAATCGAACAAGT-GAAAGGAATTTAT 1452
Query 1574 GTTGTGACTGCAGATCACGGAAATGCCGAGGACATGGTTAAAAGGGACAAATCCGGCAAG 1633
||||||||||| ||||||||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 1453 GTTGTGACTGCTGATCACGGAAACGCAGAGGACATGGTGAAGAGGGATAAATCTGGCAAG 1512
Query 1634 CCAGCTCTCGATAAGGAAGGGAACCTTCAGATTCTCACCTCTCACACCCTTAAACCAGTG 1693
|| ||| | |||||||||||||| ||||||||||| ||||||||||| || || ||||||
Sbjct 1513 CCTGCTTTGGATAAGGAAGGGAAGCTTCAGATTCTAACCTCTCACACACTCAAGCCAGTG 1572
Query 1694 CCAATTGCCATAGGAGGTCCTGGCTTGTCAGCA-GGAGTTAGGTTCAG-ACAGGATATCG 1751
|||||||| || ||||||||||| ||| | || ||||| || ||| | | || || | |
Sbjct 1573 CCAATTGCTATTGGAGGTCCTGGTTTGGCT-CAAGGAGTGAGATTCCGTAAAG-ATCTGG 1630
Query 1752 AGACACCTGGGCTTGCGAATGTAGCTGCGACAGTGATGAACCTCCATGGCTTTGTAGC-C 1810
| ||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || |
Sbjct 1631 AAACACCGGGGCTTGCAAATGTAGCTGCAACAGTGATGAACCTCCATGGATTTGTGGCTC 1690
Query 1811 CCGGACGATTATGAGACAAGTCTGATTGAAGT 1842
|| || |||||| | | |||||||||||
Sbjct 1691 CCTCT-GACTATGAGCCCACCCTGATTGAAGT 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99296678010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5