BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478160

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37925.1 | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoq...   704    0.0  


> AT4G37925.1 | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoquinone 
dehydrogenase complex | chr4:17830562-17831554 REVERSE 
LENGTH=909
Length=909

 Score =  704 bits (381),  Expect = 0.0
 Identities = 497/548 (91%), Gaps = 28/548 (5%)
 Strand=Plus/Plus

Query  1    GTGACAAATCCTGAACAAGACAGTACTCTGGAGGTACAAGAAACAGAGACAATCAAAGAA  60
            ||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct  172  GTGACAAATCCGGAACAAGACAGTACTCTTGAAGTACAAGAAACAGAGACACTCAAAGAA  231

Query  61   GAGCAATCAACAGAGAAGATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  232  GAGCAATCAACAGAGAAGATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAG  291

Query  121  CTAAACGTGAAGAGCAAAGGTATGGGCCAGTTTGGTGATCAGTGGCTAAGCAGTGTCACA  180
            || |||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||
Sbjct  292  CTGAACGTGAAGAGCAAGGGTATGGGCGATTTTGGTGGTCAGTGGCTAAGCAGTGTCACA  351

Query  181  CGTCACGTTAGGATCTACGCTGCTTATATCGACCCCGAGACTTGTGAGTTTGATCAGTCA  240
            ||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct  352  CGTCACGTTAGGATCTACGCTGCTTATATTGATCCAGAGACTTGTGAGTTTGACCAGTCA  411

Query  241  CAAATGGATAAACTCACTTTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  CAAATGGATAAACTCACTTTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAA  471

Query  301  AGCTGTAACAAGGTCTATTCTTATTTCCAAGAACTCGTCGATCACTACGAGGGAGCACCA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  AGCTGTAACAAGGTCTATTCTTATTTCCAAGAACTCGTCGATCACTACGAGGGAGCACCA  531

Query  361  -T-------TA-AC---G-GA--G-T---A-C--ACAT-TAAGATT-GAT-A-G--GATG  392
             |       || ||   | ||  | |   | |  || |  || |||  || | |  ||||
Sbjct  532  TTAACGGAGTACACATTGAGATTGATAGGATCGGACGTAGAACATTACATAAGGAAGATG  591

Query  393  TTATTTGATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAATTTCAGTATGGGA  452
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  TTGTTCGATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAATTTCAGTATGGGA  651

Query  453  AAGCCTCGTGTTCAATTCAATACTAGTAACATTGAAGGTGGTGGAGATGGTCAGCCTCAA  512
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  652  AAGCCTCGTGTACAATTCAATACCAGTAACATTGAAGGTGGTGGAGATGGTCAGCCTCAA  711

Query  513  GAAGACGC  520
            || |||||
Sbjct  712  GAGGACGC  719



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5