BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478161
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08600.1 | Symbols: | Protein of unknown function (DUF1191)... 2013 0.0
> AT3G08600.1 | Symbols: | Protein of unknown function (DUF1191)
| chr3:2612394-2613823 FORWARD LENGTH=1430
Length=1430
Score = 2013 bits (1090), Expect = 0.0
Identities = 1334/1441 (93%), Gaps = 59/1441 (4%)
Strand=Plus/Plus
Query 1 ctctctctctctcttttccaccggcgaccattca-------t--t-ct-ct-ctcctcct 48
|||||||||||||||||||||||||||||||||| | | || || ||||||||
Sbjct 6 CTCTCTCTCTCTCTTTTCCACCGGCGACCATTCATTCTCTCTCCTCCTCCTCCTCCTCCT 65
Query 49 cctccgc--cttcctccattg---c-t---cctcattcctcGATTTGTTCTTCTCTACAC 99
||||| | |||||||||||| | | ||||||||||||||||||||||||||
Sbjct 66 CCTCCTCAGCTTCCTCCATTGCTCCTTAACCCTCATTCCTCGATTTGTTCTTCTCT---T 122
Query 100 CACCAATTCCCGTTTTTACCCTTTTTGAACTACTCAGACGTGACGGCGACTTTTTATTAC 159
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 123 CACCATTTCCCCTTTTTACCCTTTTT---CTACTCAGACGTGACGGCGACTTTTTATTCC 179
Query 160 TGAGTCTCACATCTTTGACTCGCCCT-GGGGGA--tttttttGCTCCAGAGGCGACAGaa 216
|| ||||| || |||||||||||||| |||||| |||||||||||||||||||| || |
Sbjct 180 TGTGTCTCCCACCTTTGACTCGCCCTGGGGGGATTTTTTTTTGCTCCAGAGGCGAAAG-A 238
Query 217 aaaaaaaaaaCAACAATGGGGTTTCTCCGTTGTCTCCAG-T--TGCTGCTTCTGTTTCTA 273
|| ||||||| | |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 239 AACAAAAAAA-AGCAATGGGGTTTCTCCGTTGTCTCCAGCTGCTGCTGCTTCTGTTTCTA 297
Query 274 TCTCTTCGTCTACAAAAgctctcggctcaatc-tc-t-acccaatgcttcttcttcttct 330
||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||
Sbjct 298 TCTCTTCGTCTACAAAAGCTCTCTGCTCAATCTTCTTCACCCAATGCTTCTTCTTCTTC- 356
Query 331 tctcctctcgatgctcttcttcAAGATTACTCTTTTAGAGCCTTTG-TTCGTCCTCGTAC 389
| | | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 357 T-T-CACTCGATGCTCTTCTTCAAGATTACTCTTTTAGAGCC-TTGCTTCGTCCTCGTAC 413
Query 390 CGGCATTCTCTACGAAGCTTCTACTGTTCCTTCCAATTTGACTGGGATCAAACTCGCTGC 449
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGGCATTCTCTACGAGGCTACTACTGTTCCTTCCAATTTGACTGGGATCAAACTCGCTGC 473
Query 450 CATGAGACTCAGAAGCGGAAGCTTTAGAAAACGTGGAGTCACTCCTTTTAAAGAGTTCTC 509
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 TATGAGACTCAGAAGCGGAAGCTTTAGAAAACGTGGAGTCACTCCTTTTAATGAGTTCTC 533
Query 510 AATTCCCAGCGGCGTTATCGTCAAGCCGTATGTGACAAGGCTTGTCTTGGTTTATCAAAA 569
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 AATTCCCAGCGGCGTTATCGTCAAGCCGTATGTGACAAGGCTTGTTTTGGTTTATCAAAA 593
Query 570 CCTAGCTAATTTCTCTCACTTGTATTACCCTTTGTCTGGTTACGATTATGTCGCTCCTGT 629
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 CCTAGCTAATTTCTCTCACTTGTATTACCCTTTGTCTGGTTATGATTATGTCGCTCCTGT 653
Query 630 CTTGGGTCTTCTCGCTTACGATGCTAAGAATCTCTCTGCGGTTAATTTGCCTCAGCTTGA 689
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 654 CTTGGGTCTTCTCGCTTACGATGCTAAGAATCTCTCTGCGCTTAATTTGCCTCAGCTTGA 713
Query 690 TTTGAGGGTGTCTAATGATCCTATCAGAATCGATTTCTCTGATCTGGAACGAATCCCACA 749
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 TTTAAGGGTGTCTAATGATCCTATCAGAATCGATTTCTCTGATCTGGAACGAATCCCGCA 773
Query 750 AGGGTCTAGTGCTAAGTGTGTTAGGTTTGATTCTAAAGGTGAAGCGAGTTTCAGCGAATC 809
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 774 AGGGTCTAGTGCTAAGTGTGTTAGATTCGATTCTAAAGGTGAAGCGAGTTTCAGCGATTC 833
Query 810 GATTCAGCCTGGAAACACATGCGAGACTGAGCATCAGGGACATTTCTCAGTTGTGGTGAA 869
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 834 GATTCAGCCTGGAAACACATGCGAGACTGAGCATCAGGGACATTTCTCTGTGGTGGTGAA 893
Query 870 ATCTGTGGCTTCTGCTCCGAGTCCAGCTCCTCCAGGGGATAGGA-AG-GAGAAGAAGAAG 927
||||||||||||||||||||||| ||||||||| ||||| || || |||||||||||
Sbjct 894 ATCTGTGGCTTCTGCTCCGAGTCTAGCTCCTCC-TGGGAT-TGAGAGTAAGAAGAAGAAG 951
Query 928 AAGAGCTCTGAATCCAATTCCAAGACATGGATCATTGTTGGGTCGGTGGTAGGTGGATTG 987
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 952 AAGAGCTCTGATTCCAATTCCAAGACTTGGATCATTGTTGGGTCGGTGGTTGGTGGATTG 1011
Query 988 ATACTGTTGGGGCTTTTACTGTTTCTGGTTTTGAGATGTCGGAATTATAAGAAGCAAGAG 1047
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1012 ATACTGTTGGGGCTTTTACTGTTTCTGGTTTTGAGATGTCGAAATTACAAGAAGCAAGAG 1071
Query 1048 AAAATGAGGGAGATGGAGAGAGCTGGTGAGACAGGGGAAGCTCTGAGAATGACTCAGGTC 1107
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1072 AAAATGAGGGAGATGGAGAGAGCTGGAGAGACAGGGGAAGCTCTGAGGATGACTCAGGTT 1131
Query 1108 GGAGAAACTAGAGCACCAACTGCTACTACGACTCGTACACAACCAATGCTTGAAACCGAA 1167
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGTGAAACAAGAGCACCAACTGCTACTACGACTCGTACACAACCAATGCTTGAAACCGAA 1191
Query 1168 TACGCAGCTTAGGATACTTTGTGTAcatcatcatcatcatcatcatcacatcttcttgat 1227
|||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||
Sbjct 1192 TACGCAGCTTAGGATACTTT-TGTG--T-A-CATCATCATCATCATCACATCTTCTTGAT 1246
Query 1228 catctgttact-tcttcttcttcttttt-ttcttcaattattcttcttttggtaaagtgt 1285
||||||||||| |||| ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1247 CATCTGTTACTGTCTTTTTCTT-TTTTTCTTCTACAATTATTCTTCTTTTGGTAAAGTGT 1305
Query 1286 ttttttttttttCTGATTATTTTTTCTTTGTGGTTAGCAAGTTGATACTTCCACATTCAT 1345
|| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1306 TTCTTTTT----CTGATTATTTTTTCTTTGTGGTAAGCAAGTTGATACTTCCACATTCAT 1361
Query 1346 CTTGTTTCTCTGCCGGTGATAAGGAAATAAGTAATATTGTTTTCTTGTTGTGCTCTCAAA 1405
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1362 CTTGTTTCTCTGCTGGTGATAAGGAAATAAGTAATATTGTTTTCTTCTTGTGCTCTCAAA 1421
Query 1406 T 1406
|
Sbjct 1422 T 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5