BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478162

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G08610.1 | Symbols:  | unknown protein; Has 40 Blast hits to...   826    0.0  


> AT3G08610.1 | Symbols:  | unknown protein; Has 40 Blast hits 
to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:2615426-2616803 REVERSE 
LENGTH=522
Length=522

 Score =  826 bits (447),  Expect = 0.0
 Identities = 496/520 (95%), Gaps = 2/520 (0%)
 Strand=Plus/Plus

Query  1    AGAAGCACAATCGAAAGGAAGGAGAAGACGAAGATGTCGTTGGTATGGTTGGAAGCGATG  60
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    AGAAGCACAATCGGAAGAAAGGAGAAGACGAAGATGTCGTTGGTATGGTTGGAAGCGATG  62

Query  61   TTGCCTCTCGGAATCATCGGTGGGATGCTTTGTATCATGGGAAATTCTCAGTACTACATC  120
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  63   TTGCCTCTCGGAATCATCGGTGGGATGCTCTGTATCATGGGCAATTCTCAGTACTACATC  122

Query  121  CACAAAGCTTATCATGGCCGTCCGAAGCACATCGGCCACGATGAATGGGATGTTGCTATG  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  123  CACAAAGCTTATCATGGCCGTCCTAAGCACATCGGCCACGATGAATGGGATGTTGCTATG  182

Query  181  GAAAGACGCGACAAGAAAGTCGTCGAGAAAGCTGGAGCTCCTTCCTCATGATCCGCTTAA  240
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct  183  GAAAGACGCGACAAGAAAGTCGTCGAGAAAGCTGCAGCTCCTTCCTCATGATTCGCTTTA  242

Query  241  TCTCTTTGGTGTTCCTCAGGGGCTTAAGGTGAAGACTTGTGGTGACAAATAAAGTGCATT  300
            ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct  243  TCTCTTTTGTGTTCCTCAGGGGCTTAAGGTGACCACTTGTGGTGACAAATAAAGTGCATT  302

Query  301  CCAGAAGAAGAAGAAGCTGGGGGATCTAGTACTTTCATTCCCATTTGATTTTCCTTGGAC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  CCAGAAGAAGAAGAAGCTGGGGGATCTAGTACTTTCATTCCCATTTGATTTTCCTTGGAC  362

Query  361  ATGTTAAAGCTTTCAGAAATCAGACCTTAATGGCTTTTGGTTTATCTACATTTCTCTATA  420
            || |||||||||||||||||||||||| |||  | ||||||||||| | |||||||||| 
Sbjct  363  ATATTAAAGCTTTCAGAAATCAGACCTCAATAACATTTGGTTTATCAATATTTCTCTAT-  421

Query  421  T-GTGATAATTTGTATGCTTTTGAGTTGCATGATACACTGAACTAGTCTCTTGCTGTGTG  479
            | |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  422  TCGTGATATTTTGTATGCTTTTAAGTTGCATGATACACTGAACTACTCTCTTGCTGTGTG  481

Query  480  AGTGAATAAATGAATGTCTGGAAAGATGGCTCATCCTAGT  519
            ||||||||||||||| ||||||||||||||||||||||||
Sbjct  482  AGTGAATAAATGAATATCTGGAAAGATGGCTCATCCTAGT  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5