BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478163
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prot... 1810 0.0
> AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617768-2620573 FORWARD LENGTH=1268
Length=1268
Score = 1810 bits (980), Expect = 0.0
Identities = 1179/1271 (93%), Gaps = 30/1271 (2%)
Strand=Plus/Plus
Query 1 AATGCTGCTGTGACGACTCTGTTTAC-T-TGTTCCTTTTCTTCCTCGGCAACAACAACAC 58
|||||| ||||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 3 AATGCTACTGTGACGACTCTGTTTGCTTCTCTTCCTTTTCTTCCTCGGCAACAACAACAC 62
Query 59 CCTTCCTTCTCCTCACTCCCTATCCGCCAAAATCTCTTCTTCTTCttttttttttttttC 118
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 63 CCTTCC-TCTCCTCACTCCCTATCCGCCAAAATCTCTTCTTCTTCCTTTTTCTTATTTTC 121
Query 119 CTTTTC-ATATCTGATAGCTGCAAAACACAAACCACCATGTCTGGTCTGTATAA-T-T-A 174
| |||| ||||||||||||||||||||| || |||||||||||||||||||||| | | |
Sbjct 122 C-TTTCAATATCTGATAGCTGCAAAACAGAACCCACCATGTCTGGTCTGTATAATTATAA 180
Query 175 TAACTTCTCACCTTCTCGAGCCGCTTCTCCCCAGATTAGAACCACTTCCTCCGATGTTGA 234
|||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 181 TAACTTCTCACCTTCTAGAGCCGCTTCTCCTCAGATTAGAACCCCTTCCTCCGATGTTGA 240
Query 235 CAGTCAATACTTATCTCAATTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGT 294
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGTCAATACATATCTCAGTTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGT 300
Query 295 CTTACCTATATGTAGCCGACTTTTAAATCAAGAAATTTTTCGGATCACCGGAATGATGCC 354
|||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 301 CTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCC 360
Query 355 AAACCAAGGGTTTACCGATTTTGATAGGTTGCGGCATCGAAGTCCTAGTCCAATGGCTTC 414
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTC 420
Query 415 ACCAAATCTTATGTCTAATGTTCCCGGTGCTGGATTAGGTGGTTGGAATGGTCTTCCACC 474
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 421 ACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACC 480
Query 475 AGAGAGAATAGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCTGCTAGCCC 534
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCC 540
Query 535 AAGTTCATACCCAGTGAAGCGTATCTTGCGTTTAGATCTTCCAGTTGATACCTATCCGGA 594
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 541 AAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAA 600
Query 595 TTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCGTTGAAGCGTGTGGAAGC 654
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 601 TTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGC 660
Query 655 AACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGACAAAGA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 AACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGA 720
Query 715 AGAGAAACTGAAAGGTAAGCCCGGCTATGAGCATCTCAATGAGCAGCTGCATATCCTCAT 774
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 721 AGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCAT 780
Query 775 TGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATTAT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 TGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAAT 840
Query 835 CGAGGAATTGGTCAAGCCCGTGGATGAGTCACATGATTACATCAAGAGGCAGCAGTTGCG 894
|||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 841 CGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCG 900
Query 895 AGAGCTCGCGTTACTGAATTCAAACTTGAGAGAAAACAGTCCAGGGCCGAGCGGTAGTGT 954
|||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 901 AGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGT 960
Query 955 CTCGCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGCTAAGAGCATGAGAG 1014
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 961 CTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAAGAGCTTGAGAG 1020
Query 1015 ATCCTAGATaaaaaaaaTGTGTATATGTGTATAACTGGCCTAATAGTGTTGGTTGCGTCT 1074
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 1021 ATCCTAGATAAAAATTATGTGCATATGTGTATAACTGGCCTAATGGTGTTGGTTGAGTCT 1080
Query 1075 ACACTTGGTTCTTCTGCTTACCCTCTGAACCACACACTGATGCCTAAACACA--GCACCA 1132
| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 1081 GCTCTTGGTTCTTCTGCTTACCCTCTGATCCACACACTGATGCTTATACACAAAGCACCA 1140
Query 1133 AGAGAAGCCCATTTTCCTCCTTAACAGGGGGTTGAT--A------C-AT------T-T-A 1175
|||||| | | |||||||||| || |||| ||||| | | || | | |
Sbjct 1141 AGAGAA-C--AGTTTCCTCCTTGACCGGGGTTTGATGCATTGTAACCATCAAAGATATTA 1197
Query 1176 GATAATTTGGATTTATTCATGTGTTGAAGTAGTTGTATTCTTGACTTTGGAATAAAGATC 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 GATAATTTGGATTTATTCATGTGTTGAAGTAGTTGTATTCTTGACTTTGGAATGGAGATC 1257
Query 1236 TAGTTACGTGT 1246
||||||| |||
Sbjct 1258 TAGTTACATGT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5