BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478165
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08640.1 | Symbols: | Protein of unknown function (DUF3411)... 1768 0.0
AT3G08630.1 | Symbols: | Protein of unknown function (DUF3411)... 1020 0.0
> AT3G08640.1 | Symbols: | Protein of unknown function (DUF3411)
| chr3:2622880-2624308 FORWARD LENGTH=1429
Length=1429
Score = 1768 bits (957), Expect = 0.0
Identities = 1176/1279 (92%), Gaps = 25/1279 (2%)
Strand=Plus/Plus
Query 1 TTCCGTCCTAAAGATTCTAAAAGGAAGCCAATTTCGATTCTCGGAGAGGATCAC-CGATC 59
|||| ||||||||||| |||| |||| || |||||||| || |||| |||||| | |||
Sbjct 20 TTCCATCCTAAAGATTGTAAAGGGAAACCGTTTTCGATTTTCAGAGAAGATCACAC-ATC 78
Query 60 TTTCGTCCATTCACGGCCATACTTGTCGATAAAGATGGCGGCTATGGCGGCGAAGCTTCA 119
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 79 TTTCGTCCCTTCACTGCCATACGTGTCGATAAAGATGGCGGCTATGGCGGCGAAGCTTCA 138
Query 120 ACTATCGGCGAAATCGGATCAAAGCAGTGTACGATTACCGAGAGTGATCAATCTCTCACG 179
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 139 GTTATCGGCGAAATCTGATCAAAGCAGTGTGCGATTACCGAGAGTGATCAACCTCTCCCG 198
Query 180 CGATCCAACGACTAGAATCTCGTTTCCGCGAAATGGATCAGTTTGTTCACTCCACACCAG 239
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 199 CGATCCAACGACTAGAGTCTCGTTTCCGCGAAATGGATCAGTTTGTTCCCTCCACACCAA 258
Query 240 TTTCTCTTCTCCACATCTCCCGAAACCTTGCGCCGGAGGTGGTGGTGGTGGAAGCATCGG 299
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 259 TTTCTCTTCTCCACATCTCGCGAAACCTTGCGCCGGAGGTGGTGGTGGTGGAAGCACCGG 318
Query 300 TAATCACGGCGGTGGAAGTGGAAGC-G-GG-GGA------GG---AGGAGGTTCAGGCAG 347
|||| ||||||| ||||| |||||| | || ||| || ||||||||||| |
Sbjct 319 TAATAACGGCGGCGGAAGCGGAAGCGGAGGAGGAGGTGGTGGTTTTGGAGGTTCAGGGGG 378
Query 348 TGAAGCAGGAGAAGAATCATCTCCATGGGGACCAATAGGGTCATTCATCCAAGGATGGAG 407
||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 379 TGAAGCAAGTGAAGAATCATCTCCATGGGGACCAATAGGGTTATTCATCCAAGGATGGAG 438
Query 408 ATCACGAGTTGCAGCTGATCCTCAATTCCCTTTTAAGGTACTAATGGAAGAGATTGTTGG 467
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 439 ATCAAGAGTTGCAGCTGATCCTCAGTTCCCTTTTAAGGTACTAATGGAAGAGATCGTAGG 498
Query 468 ACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCGCGCCCGAATTTCGGATTGAACGAGCT 527
||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 499 ACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCACGACCTAATTTCGGATTAAACGAGCT 558
Query 528 AGATTTCGTCTTCTCGACACTCGTTGTAGGTTCGATTCTCAATTTCGTACTCATGTACAT 587
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AGATTTCGTCTTCTCCACGCTCGTTGTAGGTTCGATTCTCAATTTCGTACTCATGTACAT 618
Query 588 GTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCAGACCTTGCCTGGAATCTTTAGAAA 647
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 619 GTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCAGACTTTGCCTGGAATCTTTAGAAA 678
Query 648 CTGTCCATCAAGCCATATGTTTGAACAGGGTAGCTTCACGGTTATGAATCGTTTTGGGAC 707
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 679 CTGTCCATCAAGCCATATGTTTGAACAGGGTAGCTTCACCGTTATGAACCGTTTCGGGAC 738
Query 708 TCTTGTGTACAAAGGAATGGTTTTTGCCAGTGTAGGATTAGCTGCAGGTCTTGTAGGTAC 767
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 739 TCTTGTGTACAAAGGAATGGTTTTTGCTAGTGTAGGATTAGCTGCAGGTCTTGTAGGTAC 798
Query 768 TGCCATCTCTAATGGGTTGATCATGCTGAGGAAGAAGATGGACCCG-GACTTTGAAACGC 826
|||||| |||||||||||||| |||||||||||||||||||||||| | ||| |||||||
Sbjct 799 TGCCATTTCTAATGGGTTGATTATGCTGAGGAAGAAGATGGACCCGAG-CTTCGAAACGC 857
Query 827 CAAACAAACCGCCACCGACTGTGCTTAATTCCTTAACTTGGGCTACGCATATGGGAGTGA 886
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 858 CAAACAAACCGCCACCGACTGTGCTTAATTCTTTAACTTGGGCAACTCATATGGGAGTGA 917
Query 887 GCGCGAATGTGAGGTACCAAACGTTGAATGGGATTGAGTTCTTGCTGGCAAAGGTGTTAC 946
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 918 GTGCGAATGCAAGGTACCAAACGTTGAATGGGATTGAGTTCTTGCTGGCAAAGGTGTTGC 977
Query 947 CGCCTTTGGTGTTTAAGACCGGTGT-AGTGGTTTTGAGGTGTGCGAATAATGTTGCGGGA 1005
| || |||||||||||||| |||| | | |||||||||||||| || |||||||| |||
Sbjct 978 CCCCATTGGTGTTTAAGACAAGTGTGA-TAGTTTTGAGGTGTGCAAACAATGTTGCTGGA 1036
Query 1006 GGAATGTCGTTTGTTATGTTGGCGAGGCTGACAGGATCACAGTCGGTTGAGGAGAAGACA 1065
||||||||||||||| ||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct 1037 GGAATGTCGTTTGTTTTGTTGGCAAGGATGACGGGATCACAGTCGGTGGAGGAGAAGACA 1096
Query 1066 GAGATTTCAGAGAAAGAGAAGGATGATTGAATCTCATCTTAGTCTTTCAAGGTTTTTGTT 1125
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1097 GAGATTTCAGAGAAAGAGAAGGATGATTGAATCTCATCCTAGTCTTTCAAGGTTTTTGTT 1156
Query 1126 CCCGTGTGCTTT-CGCCAGTTCATAGGCTTCTTGAGTTGAAACCATTTGTGTTGGAATAA 1184
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CCTGTGTGTTTTTCGCCAGTTCATAGGCTTCTTGAGTTGAAACCATTTGTGTTGGAATAA 1216
Query 1185 ACAAGATGAATCCCTTCTTAGGTTCCATCCTAATATTTGGATGTCATCATTAGGCCAAGT 1244
| ||||||||||||||||||||| |||||||| | | ||||||||| |||||||||||
Sbjct 1217 ATAAGATGAATCCCTTCTTAGGT-CCATCCTA-T-T--GGATGTCATTGTTAGGCCAAGT 1271
Query 1245 TTCACTGTTTTCTTTTTCA 1263
|| ||||||||||||||
Sbjct 1272 TTGT-TGTTTTCTTTTTCA 1289
> AT3G08630.1 | Symbols: | Protein of unknown function (DUF3411)
| chr3:2620832-2622220 FORWARD LENGTH=1389
Length=1389
Score = 1020 bits (552), Expect = 0.0
Identities = 852/995 (86%), Gaps = 27/995 (3%)
Strand=Plus/Plus
Query 91 AAGATGGCGGCTATGGCGGCGAAGCTTCA-ACTATCGGCGAAATCGGATCAAAGCAGTGT 149
||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||| |||
Sbjct 109 AAGATGGCGGCTATGGCGGCGAAGCTTCATA-TATCGACGAAATCGGATCAGAGCAATGT 167
Query 150 ACGATTACCGAGAGTGATCAATCTCTCACGCGATCCAA-CGACTAGAATCTCGTTTCCGC 208
||||| || ||| ||||||| || || || ||||||| || ||||| ||| |||||| |
Sbjct 168 GCGATTGCCTAGACTGATCAACCTGTCGCGTGATCCAACCG-CTAGAGTCTTGTTTCCAC 226
Query 209 GAAATGGATCAGTTTGTTCACTCCACACCAGTTTCTCTTCTCCACATCTCCCGAAACCTT 268
|||| |||||||||| ||| |||||||||| |||||||||||| || | | || |
Sbjct 227 GAAACGGATCAGTTTCTTCGCTCCACACCAACTTCTCTTCTCCAAATATAATGGTTCCAT 286
Query 269 GCGCCGGAGGTGGTGGTGGTGGAAGCATCGGTAATCACGGCGGTGGAAGTGGAAGCGGGG 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 287 GCGCCGGAGGTGGTGGTGGTGGAAGCATCGGTAATCACGGCGGTGGAAGTGGAAGCGGAG 346
Query 329 GAGGAGGAGGT--TCA-GGCAG-TGAAGCAGGAGAAGAATCATCTCCATGGGGACCAATA 384
|||| || ||| | | || || | || || ||||||||| ||||||||||||||| ||
Sbjct 347 GAGGTGGTGGTGGTTATGG-AGGTTCAGAAGAAGAAGAATCGTCTCCATGGGGACCATTA 405
Query 385 GGGTCATTCATCCAAGGATGGAGATCACGAGTTGCAGCTGATCCTCAATTCCCTTTTAAG 444
|||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 406 GGGTTATTTATCCAAGGATGGAGATCACGAGTTGCAGCTGATTCTCAATTCCCTTTCAAG 465
Query 445 GTACTAATGGAAGA-GATTGTTGGACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCGCG 503
|||||||||||| | | ||||||| ||||||| ||| || || ||||||||||| ||
Sbjct 466 GTACTAATGGAA-ATGCTTGTTGGTGTTAGCGCCAATGTACTTGGCGACATGGCTTCACG 524
Query 504 CCCGAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCGACACTCGTTGTAGGTTCGAT 563
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 525 CCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCCACTCTCGTTGTAGGTTCGAT 584
Query 564 TCTCAATTTCGTACTCATGTACATGTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCA 623
|||||||||| |||||||||| | ||||||||| ||||| | ||| ||| ||||| ||
Sbjct 585 TCTCAATTTCACACTCATGTACCTCTTAGCTCCTTCTGCAATATCTCATGGATCCTC-CA 643
Query 624 GACCT-T-GCCTGGAATCTTTAGAAACTGTCCATCAAGCCATATGTTTGAACAGGGTAGC 681
| | | ||||||||||||||||| |||||| || |||||||||||||||||||||| |
Sbjct 644 -ATTTGTTGCCTGGAATCTTTAGAAGCTGTCCTTCGAGCCATATGTTTGAACAGGGTAAC 702
Query 682 TTCACGGTTATGAATCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTTTGCCAGTGTA 741
||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 703 TTCACCCTTATGAACCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTTTGCTACCGTG 762
Query 742 GGATTAGCTGCAGGTCTTGTAGGTACTGCCATCTCTAATGGGTTGATCATGCTGAGGAAG 801
|||||||||||||||||||| || || || |||||||| ||||||||||||||||||||
Sbjct 763 GGATTAGCTGCAGGTCTTGTTGGAACCGCTATCTCTAACGGGTTGATCATGCTGAGGAAA 822
Query 802 AAGATGGACCCG-GACTTTGAAACGCCAAACAAACCGCCACCGACTG-TGCTTAATTCCT 859
||||| || ||| | ||| |||||||| |||||||| ||||| || | |||| ||||| |
Sbjct 823 AAGATTGATCCGAG-CTTCGAAACGCCGAACAAACCACCACCTAC-GCTGCTGAATTCTT 880
Query 860 TAACTTGGGCTACGCATATGGGAGTGAGCGCGAATGTGAGGTACCAAACGTTGAATGGGA 919
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 881 TAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTACCAAACGTTGAATGGGG 940
Query 920 TTGAGTTCTTGCTGGCAAAGGTG-TTACCGCCTTTGGTGTTTAAGACCGGTGT-AGTGGT 977
||| |||||||||| |||| | || ||||| ||||||||||| || |||| | || |
Sbjct 941 CTGAATTCTTGCTGGAAAAG-TCATTGCCGCCATTGGTGTTTAAAACAAGTGTGATTGCT 999
Query 978 TTTGAGGTGT-GCGAATAATGTTGCGGGAGGAATGTCGTTTGTTATGTTGGCGAGGCTGA 1036
|| |||| || | ||| |||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1000 TT-GAGG-GTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTACATTGGCGAGGATGA 1057
Query 1037 CAGGATCACAGTCGGTTGAGGAGAAGACAGA-GAT 1070
| |||||||||||||| |||||| ||| ||| |||
Sbjct 1058 CTGGATCACAGTCGGTGGAGGAGGAGA-AGAAGAT 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5