BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478168 Length=1821 Score E Sequences producing significant alignments: (Bits) Value AT3G08660.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2579 0.0 > AT3G08660.1 | Symbols: | Phototropic-responsive NPH3 family protein | chr3:2631130-2633166 FORWARD LENGTH=1749 Length=1749 Score = 2579 bits (1396), Expect = 0.0 Identities = 1616/1726 (94%), Gaps = 0/1726 (0%) Strand=Plus/Plus Query 4 TCAGACAGCCCTCTGTCTCTTTCTTCTTCCTCTCCTCCTAGTAACAGTCGCTCCCCTGTT 63 ||||||||| || ||||||| ||||||| ||||||||| |||||| ||||||| ||||| Sbjct 7 TCAGACAGCACTTTGTCTCTCCCTTCTTCATCTCCTCCTTGTAACAATCGCTCCTCTGTT 66 Query 64 CCTCCAACTTTCTCCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 123 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 CCTCCAACTTTCACCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 126 Query 124 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 186 Query 184 AAAATGGTGAGAGATCTCAAGGACTCTTCATCTATGATTGAGCTCAGAGATTTCCCAGGT 243 || |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 187 AAGATGGTGAGAGATCTCAAGGACTCTTCTTCTATGATTGAGCTTAGAGATTTCCCTGGT 246 Query 244 GGACCTCCGTCGTTTGAACTCGCCATGAAATTTTGCTACGGCATTAATTTTGAGATCACT 303 |||||| || ||||||||||| |||||||||||||||||||||||||||| || |||||| Sbjct 247 GGACCTTCGACGTTTGAACTCACCATGAAATTTTGCTACGGCATTAATTTCGATATCACT 306 Query 304 GCCTCCAACGTGGTCGCTCTCCGTTGCGCTGCTGGTTATCTCGAGATGACTGAGGACTAT 363 |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 307 GCCTTTAACGTGGTCTCTCTCCGTTGCGCTGCTGGTTATCTTGAGATGACTGAGGACTAC 366 Query 364 AAAGAAAAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 423 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 AAAGAACAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 426 Query 424 TTCCATGAATCTGTCCTAGTACTTTGTTCCTGCCAGACGCAAGAGATTGCTGAAACATAT 483 || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 427 TTTCATGAATCTGTCCTAGTACTTTGCTCCTGCGAGACGCAAGAGATTGCTGAAACATAT 486 Query 484 GAAATTCCTGACCGGTGCATGGAGGCCATCACCATGAATGCTTGCAGAAAGCAGTTAGTA 543 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 487 GAAATTCCTGACCGGTGCGTGGAGGCCATCGCCATGAATGCTTGCAGAAAGCAGTTAGTA 546 Query 544 TCATGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTTGAGTTGTGGACTGAAGAACTC 603 ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 547 TCAGGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTCGAGATGTGGACTGAAGAACTC 606 Query 604 TCTGCTCTCGGGATTGATTACTACGCCCGAGTTGTATCTGAGATGGCGAGATTAGGCGTG 663 ||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||| Sbjct 607 TCTGCTCTCGGGATTGATTACTACGTCCAAGTTGTATCTGCGATGGCGAGGTTAAGCGTG 666 Query 664 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 726 Query 724 ATCAATCCAAACTGCCAGGAGCAGAGGAAAATCATTGAAACCATGGTTACCCTTTTGCCG 783 ||| ||| |||||||||||| |||||||||||| ||||| ||||||||| |||||||||| Sbjct 727 ATCGATCGAAACTGCCAGGAACAGAGGAAAATCGTTGAAGCCATGGTTAACCTTTTGCCG 786 Query 784 AATAACGAAAAAGGATCTTATTCTTTATCGACTATTCCTCTCAGTTTCCTCTTTGGAATG 843 ||| |||||||||||||||| |||||||| | |||||||||| ||||||||||||||||| Sbjct 787 AATGACGAAAAAGGATCTTACTCTTTATCAATTATTCCTCTCGGTTTCCTCTTTGGAATG 846 Query 844 CTTAAGGTCGGAACTATAATAGATATAGAAATCTCTTGCAGGCTCGAGCTCGAGCGTAGA 903 || |||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 847 CTCAAGGTCGGAACTATAATAGATATAGAGATCTCTTGCAGGCTCGAGCTTGAACGTAGA 906 Query 904 ATCGGGCATCAGTTAGAGATTGTATCTCTCGACGATCTGCTAATACCTTCTGTCCAAAAC 963 ||||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| Sbjct 907 ATCGGGCATCAGTTAGAGACCGCGTCTCTCGATGATCTGCTTATACCTTCTGTCCAAAAC 966 Query 964 GAAGATTCAATGTACGATGTGGATACTGTCCACAGGATACTCACATGCTTTCTTGAGAGG 1023 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 967 GAAGATTCAATGTACGATGTGGATACCGTCCACAGGATACTCACATTCTTTCTTGAGAGG 1026 Query 1024 ATTGAGGAGGAAGATGAAGAATGTGGTTACGAGTCGGATTCCACGGGACAGCACAGTTCA 1083 ||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 1027 ATTGAAGAGGAAGATGATGAATGTGGTTACGATTCGGATTCCACTGGACAACACAGTTCG 1086 Query 1084 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGCAGAGATCGCACCGGATCCATAC 1143 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1087 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGTTGAGATCGCACCGGATCCATAC 1146 Query 1144 CTGAGTCTACTCAAGTTCACGGCCATTATAGAGACATTACCCGAACGCTCACGTATCATA 1203 |||||||||| |||||| ||||| |||||||||||| ||||||||| |||||||||| | Sbjct 1147 CTGAGTCTACACAAGTTTACGGCTATTATAGAGACACTACCCGAACACTCACGTATCGTT 1206 Query 1204 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATTCGTTATTGACAGAA 1263 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1207 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATCCATTATTGACAGAA 1266 Query 1264 GAAGAATGCAAGACGCTATGCAAATTCATTGACTGTAAGAAACTTTCACAAGAAGCAAGC 1323 |||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1267 GAAGAACGCAAGAAGCTATGCAACTTCATTGACTGCAAGAAACTTTCACAAGAAGCAAGC 1326 Query 1324 AACCACGTGGCACAAAACGATCGGCTTCCTGTACATATGGTGGTTCGAGTGCTTTACACA 1383 |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| Sbjct 1327 AACCACGTGGCACAAAACGATCGGCTGCCTGTACAAATGGTGGTTAGAGTGCTTTACACA 1386 Query 1384 GAACAGTTGCGACTGAAGAAAGCTCTGTCCGGAGATTCGGAAGAAGGGTCGTGGGTTTTG 1443 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1387 GAACAGTTGCGACTGAAGAAAGCTCTGTCGGGAGATTCAGAAGAAGGGTCGTGGGTTTTG 1446 Query 1444 TCGTCTGGAGTACAAAGCCGAACGGTTTCCCCAAGAGACACGTATGCATCGTTGAGGAGA 1503 | |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| Sbjct 1447 CCTTCTGGAGTACAAAGCCGAGCGGTTTCGCCAAGAGACACGTATGCAGCGTTGAGGAGA 1506 Query 1504 GAAAACAGAGAGCTGAAGCTGGAGATATCGAGGATGAGAATGAGGGTGAGCGAGTTAGAG 1563 ||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| Sbjct 1507 GAAAACAGAGAGCTGAAGCTGGAAATATCAAGGATGAGAGTGAGAGTGAGCGAGTTAGAG 1566 Query 1564 AAACAACATAATTTGATGAAACATGAGATGATGGAGAAGTCCGGTAGTAATAGTGGAACC 1623 ||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| Sbjct 1567 AAAGAACATAATTTGATGAAACATGAGATGATGGAGAAATCCGGTAATAATGGTGGAACG 1626 Query 1624 TTCTTGACGTCATTGTCCAAAGGAATCGGAAGGATCGCGATATTCGGCGGAGAAAACCGG 1683 |||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| |||| Sbjct 1627 TTCTTGACGTCACTGTCCAAAGGAATTGGAAGGATCGCGACATTCGGTGGAGAAACCCGG 1686 Query 1684 CAAAAGGTTAATCGAAAATCAAGGTCGGTATCGGAGAGAAAAACAA 1729 |||||||| || || |||||||||||||| |||||||||||| ||| Sbjct 1687 CAAAAGGTGAACCGGAAATCAAGGTCGGTGTCGGAGAGAAAATCAA 1732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90109978275 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5