BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478168
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08660.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2579 0.0
> AT3G08660.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:2631130-2633166 FORWARD LENGTH=1749
Length=1749
Score = 2579 bits (1396), Expect = 0.0
Identities = 1616/1726 (94%), Gaps = 0/1726 (0%)
Strand=Plus/Plus
Query 4 TCAGACAGCCCTCTGTCTCTTTCTTCTTCCTCTCCTCCTAGTAACAGTCGCTCCCCTGTT 63
||||||||| || ||||||| ||||||| ||||||||| |||||| ||||||| |||||
Sbjct 7 TCAGACAGCACTTTGTCTCTCCCTTCTTCATCTCCTCCTTGTAACAATCGCTCCTCTGTT 66
Query 64 CCTCCAACTTTCTCCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CCTCCAACTTTCACCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 126
Query 124 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 186
Query 184 AAAATGGTGAGAGATCTCAAGGACTCTTCATCTATGATTGAGCTCAGAGATTTCCCAGGT 243
|| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 187 AAGATGGTGAGAGATCTCAAGGACTCTTCTTCTATGATTGAGCTTAGAGATTTCCCTGGT 246
Query 244 GGACCTCCGTCGTTTGAACTCGCCATGAAATTTTGCTACGGCATTAATTTTGAGATCACT 303
|||||| || ||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 247 GGACCTTCGACGTTTGAACTCACCATGAAATTTTGCTACGGCATTAATTTCGATATCACT 306
Query 304 GCCTCCAACGTGGTCGCTCTCCGTTGCGCTGCTGGTTATCTCGAGATGACTGAGGACTAT 363
|||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 307 GCCTTTAACGTGGTCTCTCTCCGTTGCGCTGCTGGTTATCTTGAGATGACTGAGGACTAC 366
Query 364 AAAGAAAAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAAGAACAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 426
Query 424 TTCCATGAATCTGTCCTAGTACTTTGTTCCTGCCAGACGCAAGAGATTGCTGAAACATAT 483
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 427 TTTCATGAATCTGTCCTAGTACTTTGCTCCTGCGAGACGCAAGAGATTGCTGAAACATAT 486
Query 484 GAAATTCCTGACCGGTGCATGGAGGCCATCACCATGAATGCTTGCAGAAAGCAGTTAGTA 543
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 487 GAAATTCCTGACCGGTGCGTGGAGGCCATCGCCATGAATGCTTGCAGAAAGCAGTTAGTA 546
Query 544 TCATGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTTGAGTTGTGGACTGAAGAACTC 603
||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 547 TCAGGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTCGAGATGTGGACTGAAGAACTC 606
Query 604 TCTGCTCTCGGGATTGATTACTACGCCCGAGTTGTATCTGAGATGGCGAGATTAGGCGTG 663
||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| |||||
Sbjct 607 TCTGCTCTCGGGATTGATTACTACGTCCAAGTTGTATCTGCGATGGCGAGGTTAAGCGTG 666
Query 664 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 726
Query 724 ATCAATCCAAACTGCCAGGAGCAGAGGAAAATCATTGAAACCATGGTTACCCTTTTGCCG 783
||| ||| |||||||||||| |||||||||||| ||||| ||||||||| ||||||||||
Sbjct 727 ATCGATCGAAACTGCCAGGAACAGAGGAAAATCGTTGAAGCCATGGTTAACCTTTTGCCG 786
Query 784 AATAACGAAAAAGGATCTTATTCTTTATCGACTATTCCTCTCAGTTTCCTCTTTGGAATG 843
||| |||||||||||||||| |||||||| | |||||||||| |||||||||||||||||
Sbjct 787 AATGACGAAAAAGGATCTTACTCTTTATCAATTATTCCTCTCGGTTTCCTCTTTGGAATG 846
Query 844 CTTAAGGTCGGAACTATAATAGATATAGAAATCTCTTGCAGGCTCGAGCTCGAGCGTAGA 903
|| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 847 CTCAAGGTCGGAACTATAATAGATATAGAGATCTCTTGCAGGCTCGAGCTTGAACGTAGA 906
Query 904 ATCGGGCATCAGTTAGAGATTGTATCTCTCGACGATCTGCTAATACCTTCTGTCCAAAAC 963
||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||
Sbjct 907 ATCGGGCATCAGTTAGAGACCGCGTCTCTCGATGATCTGCTTATACCTTCTGTCCAAAAC 966
Query 964 GAAGATTCAATGTACGATGTGGATACTGTCCACAGGATACTCACATGCTTTCTTGAGAGG 1023
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 967 GAAGATTCAATGTACGATGTGGATACCGTCCACAGGATACTCACATTCTTTCTTGAGAGG 1026
Query 1024 ATTGAGGAGGAAGATGAAGAATGTGGTTACGAGTCGGATTCCACGGGACAGCACAGTTCA 1083
||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1027 ATTGAAGAGGAAGATGATGAATGTGGTTACGATTCGGATTCCACTGGACAACACAGTTCG 1086
Query 1084 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGCAGAGATCGCACCGGATCCATAC 1143
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1087 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGTTGAGATCGCACCGGATCCATAC 1146
Query 1144 CTGAGTCTACTCAAGTTCACGGCCATTATAGAGACATTACCCGAACGCTCACGTATCATA 1203
|||||||||| |||||| ||||| |||||||||||| ||||||||| |||||||||| |
Sbjct 1147 CTGAGTCTACACAAGTTTACGGCTATTATAGAGACACTACCCGAACACTCACGTATCGTT 1206
Query 1204 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATTCGTTATTGACAGAA 1263
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1207 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATCCATTATTGACAGAA 1266
Query 1264 GAAGAATGCAAGACGCTATGCAAATTCATTGACTGTAAGAAACTTTCACAAGAAGCAAGC 1323
|||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1267 GAAGAACGCAAGAAGCTATGCAACTTCATTGACTGCAAGAAACTTTCACAAGAAGCAAGC 1326
Query 1324 AACCACGTGGCACAAAACGATCGGCTTCCTGTACATATGGTGGTTCGAGTGCTTTACACA 1383
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1327 AACCACGTGGCACAAAACGATCGGCTGCCTGTACAAATGGTGGTTAGAGTGCTTTACACA 1386
Query 1384 GAACAGTTGCGACTGAAGAAAGCTCTGTCCGGAGATTCGGAAGAAGGGTCGTGGGTTTTG 1443
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1387 GAACAGTTGCGACTGAAGAAAGCTCTGTCGGGAGATTCAGAAGAAGGGTCGTGGGTTTTG 1446
Query 1444 TCGTCTGGAGTACAAAGCCGAACGGTTTCCCCAAGAGACACGTATGCATCGTTGAGGAGA 1503
| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 1447 CCTTCTGGAGTACAAAGCCGAGCGGTTTCGCCAAGAGACACGTATGCAGCGTTGAGGAGA 1506
Query 1504 GAAAACAGAGAGCTGAAGCTGGAGATATCGAGGATGAGAATGAGGGTGAGCGAGTTAGAG 1563
||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||
Sbjct 1507 GAAAACAGAGAGCTGAAGCTGGAAATATCAAGGATGAGAGTGAGAGTGAGCGAGTTAGAG 1566
Query 1564 AAACAACATAATTTGATGAAACATGAGATGATGGAGAAGTCCGGTAGTAATAGTGGAACC 1623
||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 1567 AAAGAACATAATTTGATGAAACATGAGATGATGGAGAAATCCGGTAATAATGGTGGAACG 1626
Query 1624 TTCTTGACGTCATTGTCCAAAGGAATCGGAAGGATCGCGATATTCGGCGGAGAAAACCGG 1683
|||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| ||||
Sbjct 1627 TTCTTGACGTCACTGTCCAAAGGAATTGGAAGGATCGCGACATTCGGTGGAGAAACCCGG 1686
Query 1684 CAAAAGGTTAATCGAAAATCAAGGTCGGTATCGGAGAGAAAAACAA 1729
|||||||| || || |||||||||||||| |||||||||||| |||
Sbjct 1687 CAAAAGGTGAACCGGAAATCAAGGTCGGTGTCGGAGAGAAAATCAA 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5