BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478170
Length=2545
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08680.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3302 0.0
> AT3G08680.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:2637592-2640838 FORWARD LENGTH=2536
Length=2536
Score = 3302 bits (1788), Expect = 0.0
Identities = 2087/2226 (94%), Gaps = 42/2226 (2%)
Strand=Plus/Plus
Query 355 CTCACCAATGCCCCT-CACCATTCTCCTCTGAACCAAGCTCTAAGTTGCTGTTGAATGAG 413
|||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 264 CTCACCAATG-TCCTGAACCATTCTCCTCTGAATCAACCTCTAAGTTGCTGTTGAATGAG 322
Query 414 AAAGCTTTGATGTGA-CTGAACCTGAGAGTGTAACAAAGGACTCATGATGAAGATTATTG 472
||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||
Sbjct 323 AAAGCTTTGATGTGAGC-GAGCCTGAGAGTGTAACAAAGGACTGATGATGAAGATTATTG 381
Query 473 CGGCGTTCCTCTTCCTCTTGGTCTC-ACCTTTTGTTTCCCGTTGTTTCTCTGCAGACATA 531
||||||| ||||||||||||||| | | ||||||||||||||||||| ||||||||||||
Sbjct 382 CGGCGTTTCTCTTCCTCTTGGTCACGA-CTTTTGTTTCCCGTTGTTTGTCTGCAGACATA 440
Query 532 GAATCGGACAAGCAAGCACTGCTTGAGTTTGCATCTCTTGTTCCTCACAGTCGCAAACTC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAATCGGACAAGCAAGCACTGCTTGAGTTTGCATCTCTTGTTCCTCACAGTCGCAAACTC 500
Query 592 AACTGGAACTCCACTATTCCAATCTGTGGTTCTTGGACCGGTATCACCTGCTCCAAGAAC 651
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 501 AACTGGAACTCCACTATTCCAATCTGTGCCTCTTGGACTGGTATCACCTGCTCCAAGAAC 560
Query 652 AACGCCCGTGTAACCGCACTTCGTTTGCCTGGATCTGGACTTTATGGACCTTTACCAGAG 711
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 561 AACGCCCGTGTAACCGCACTCCGTTTGCCTGGATCTGGACTTTATGGACCTTTACCAGAG 620
Query 712 AAAACATTTGAGAAGCTTGATGCCCTCAGGATTATTAGCCTTAGATCCAACAACCTTCAA 771
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 621 AAAACATTTGAGAAGCTTGATGCCCTCAGGATCATTAGCCTTAGATCCAACCACCTTCAA 680
Query 772 GGGAACATTCCATCTGTCATTCTTTCTCTTCCTTTTATCCGATCACTCTATTTTCACGAC 831
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 681 GGGAACATTCCATCTGTCATTCTTTCACTTCCTTTTATCCGATCACTATACTTTCATGAA 740
Query 832 AACAACTTTTCTGGTACTATCCCTCCCGTTCTTTCTCGTCGCCTTGTTAATCTTGATCTC 891
||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 741 AACAACTTTTCTGGTACTATCCCTCCCGTCCTTTCTCATCGCCTCGTTAATCTTGATCTC 800
Query 892 TCCGCCAACTCCCTCTCTGGAAACATTCCCTCGAGTCTACAAAACCTTACCCAGCTCACT 951
||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 801 TCCGCCAACTCGCTCTCGGGAAACATTCCCACGAGTCTACAAAACCTTACCCAGCTCACT 860
Query 952 GATCTCAGCCTGCAAAACAATTCTCTTAGTGGGCCAATTCCTAACCTCCCTCCTCGCCTT 1011
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 861 GATCTCAGCCTGCAAAACAATTCTCTTAGTGGTCCAATTCCTAACCTCCCTCCTCGCCTT 920
Query 1012 AAATACTTGAACTTGAGCTTCAATAATCTTACCGGGTCAGTTCCATCTTCTATCAAGTCC 1071
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct 921 AAATACTTGAATTTGAGCTTCAATAACCTTAACGGGTCAGTTCCATCTTCTGTCAAGTCC 980
Query 1072 TTCCCAGCATCCTCATTTCAAGGTAATAGCCTTTTGTGCGGTGCTCCTCTAACTCCATGC 1131
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 981 TTCCCAGCATCCTCATTTCAAGGTAATAGCCTTCTATGCGGTGCTCCTCTGACTCCATGC 1040
Query 1132 TCAGAGAACACCACTGCACCATCTCCTTCACCGACAACACCAACAGAAGGTCCTGGTACA 1191
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CCAGAAAACACCACTGCACCATCTCCTTCACCGACAACACCAACAGAAGGTCCTGGTACA 1100
Query 1192 ACCAATATAGGTCGTGGTACCGCCAAAAAAGTTCTCTCCACTGGTGCTATTGTGGGCATT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACCAATATAGGTCGTGGTACCGCCAAAAAAGTTCTCTCCACTGGTGCTATTGTGGGCATT 1160
Query 1252 GCAGTTGGAGGTTCGATTCTGTTGTTTATCATTCTTGCCATCATAACCCTTTGCTGTGCC 1311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GCAGTTGGAGGTTCGGTTCTGTTGTTTATCATTCTTGCCATCATAACCCTTTGCTGTGCC 1220
Query 1312 AAGAAAAGAGATGGCGGGCAAGACAGCACCGCAGTGCCAAAAGCTAAACCCGGGAGGAGT 1371
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1221 AAGAAAAGAGATGGCGGGCAAGATAGCACCGCAGTGCCAAAAGCTAAACCCGGGAGGAGT 1280
Query 1372 GACAACAAGGCCGAGGAGTTTGGGAGTGGGGTGCAAGAGGCAGAGAAGAACAAGCTGGTC 1431
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1281 GACAACAAGGCTGAGGAGTTTGGGAGTGGGGTGCAAGAGGCGGAGAAGAACAAGCTGGTC 1340
Query 1432 TTCTTTGAAGGAAGTTCATATAACTTCGATCTTGAGGACTTACTCAGAGCCTCGGCTGAA 1491
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1341 TTCTTTGAAGGAAGTTCATATAACTTTGATCTTGAGGACTTGCTCAGAGCCTCGGCTGAA 1400
Query 1492 GTTTTAGGGAAAGGAAGCTACGGCACAACGTATAAGGCCATCTTAGAGGAAGGAACCACA 1551
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GTTTTAGGGAAAGGAAGCTATGGCACAACGTATAAGGCCATCTTAGAGGAAGGAACCACG 1460
Query 1552 GTGGTGGTGAAGAGGCTGAAAGAAGTAGCAGCTGGGAAACGGGAGTTCGAACAGCAGATG 1611
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1461 GTGGTGGTGAAGAGACTGAAAGAAGTAGCAGCTGGGAAACGGGAGTTCGAGCAGCAGATG 1520
Query 1612 GAAGCCGTGGGAAGGATCAGTCCACACGTGAACGTAGCTCCTCTCCGTGCTTATTACTTC 1671
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1521 GAAGCCGTGGGAAGGATCAGTCCACACGTGAATGTAGCTCCTCTCCGTGCCTATTACTTT 1580
Query 1672 TCGAAAGACGAAAAATTACTCGTGTATGATTACTACCAAGGGGGAAATTTCTCCATGCTG 1731
|| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1581 TCAAAAGACGAGAAGCTACTCGTGTATGATTACTACCAAGGGGGCAATTTCTCCATGCTG 1640
Query 1732 CTTCATGGAAACAACGAGGGAGGAAGAGCAGCGTTAGACTGGGAAACAAGGTTAAGGATC 1791
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1641 CTTCATGGAAACAATGAGGGAGGAAGAGCAGCGTTGGACTGGGAAACAAGGTTAAGGATC 1700
Query 1792 TGTCTGGAAGCCGCTAGGGGAATTTCTCACATCCATTCTGCATCTGGTGCTAAACTCCTC 1851
||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 TGTTTGGAAGCTGCGAGGGGAATTTCTCACATCCATTCTGCATCTGGTGCTAAACTCCTC 1760
Query 1852 CATGGAAACATAAAATCACCAAATGTCCTCTTAACCCAAGAGCTCCAAGTCTGTGTTTCT 1911
||||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 1761 CATGGAAACATCAAATCACCAAATGTCCTCTTAACCCAAGAACTTCATGTCTGTGTCTCT 1820
Query 1912 GATTTCGGTATAGCTCCATTGATGAGCCATCACACCTTGATCCCATCAAGAAGCTTAGGT 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 GATTTCGGTATAGCTCCATTGATGAGCCATCACACCTTGATCCCATCAAGAAGCTTAGGT 1880
Query 1972 TACAGAGCACCCGAGGCCATAGAAACCCGTAAACATACCCAGAAATCCGATGTATACAGC 2031
|||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||
Sbjct 1881 TACAGAGCACCCGAGGCCATAGAAACACGGAAACATACCCAGAAGTCCGACGTATACAGC 1940
Query 2032 TTTGGTGTACTGTTGCTAGAAATGCTGACAGGGAAAGCAGCCGGGAAGACGACAGGGCAT 2091
||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 1941 TTTGGTGTACTGTTGCTAGAAATGCTGACTGGGAAAGCAGCAGGGAAGACTACTGGGCAT 2000
Query 2092 GAAGAAGTGGTGGATCTGCCAAAGTGGGTGCAGTCAGTGGTGAGAGAGGAGTGGACTGGA 2151
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2001 GAAGAAGTGGTGGATCTGCCAAAGTGGGTGCAATCAGTGGTGAGAGAGGAGTGGACTGGA 2060
Query 2152 GAAGTGTTTGACGTCGAGCTGATCAAGCAGCAGCACAATGTTGAGGAAGAGATGGTGCAG 2211
|||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 2061 GAAGTGTTTGACGTAGAGCTGATCAAGCAGCAACACAACGTAGAGGAAGAAATGGTGCAG 2120
Query 2212 ATGTTGCAGATAGCAATGGCATGTGTGTCTAAGCATCCAGATTCTAGGCCTACGATGGAG 2271
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2121 ATGTTGCAGATAGCAATGGCATGTGTGTCTAAGCATCCAGATTCTAGGCCTTCAATGGAG 2180
Query 2272 GAAGTGGTAAACATGATGGAGGAGATTCGACCTTCAGGGTCTGGTCCTGGTTCTGGTAAC 2331
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2181 GAAGTGGTTAACATGATGGAGGAGATTCGACCTTCAGGGTCCGGTCCTGGTTCTGGTAAC 2240
Query 2332 AGAGCCTCCTCGCCCGAAATGATCAGAAGCTCTGATAGCCCCGTTTAGATTGGtttt--- 2388
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 2241 AGAGCCTCCTCGCCGGAGATGATCAGAAGCTCTGATAGCCCGGTTTAGATTGGTTTTAAA 2300
Query 2389 tt-----------attctc---t--tt-ttt-t----gcttttccttcttcttcttcATA 2426
|| |||||| | || ||| | |||||||||||||||||||| |
Sbjct 2301 TTCTCTTTCTCTCATTCTCAAATCATTATTTATTTTTGCTTTTCCTTCTTCTTCTTC-T- 2358
Query 2427 TAATAAACCGTTTCCT--AGTTAT--ATGTCTGACTGCATAAtttttttCCAAACA-T-- 2479
| ||||||||||| | |||| | ||||||||||||||||||| || |||| || |
Sbjct 2359 TCATAAACCGTTTATTTTAGTTCTCTATGTCTGACTGCATAATTTATT-CCAATCAATAT 2417
Query 2480 CAGGAAAAGTAGTGTAATTGAAAATCCTCACCATGAATGGTTGTAATTCTTAGATTGGTT 2539
| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2418 CTGGAATTGTAGTGTAATTGAAAC-CCTCACCATGAATGGTTGTAGTTCTTAGATTGGTT 2476
Query 2540 TTAAGT 2545
|||||
Sbjct 2477 ATAAGT 2482
Score = 272 bits (147), Expect = 1e-71
Identities = 236/273 (86%), Gaps = 29/273 (11%)
Strand=Plus/Plus
Query 27 agagaagagagaagagagaTTGGAATCTGAAACTGAAACATCGAGATTTACGTTTCTCCG 86
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AGAGAAGA-AGAAGAGAGATTGGAATCTGAAACTGTAACATCGAGATTTACGTTTCTCCG 59
Query 87 TTGGCGTCACGCCGAAGCTTCCATACTTTTTTCACCAGAAA-CCCGCAACG--T-TTTCT 142
| |||||||||||||||||||||||| | ||||||| ||| |||| | |||||
Sbjct 60 TCGGCGTCACGCCGAAGCTTCCATAC-----T--CCAGAAACCCCAAAACGCTTATTTCT 112
Query 143 C-----TCT----TCTGACTC-T-TG---CTTGAATCACTTGGGGTTGTGTCACTGAATC 188
| ||| ||| ||| | || ||| |||||||||||||||||||||||||||
Sbjct 113 CAAAAATCTCCACTCTCTCTCTTCTGAATCTTCAATCACTTGGGGTTGTGTCACTGAATC 172
Query 189 TGCATCAATGGCGATTCCAGATTCCTCACTCTTTTCTGCTTTTGCCTTTAGCTCCTCAAG 248
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 173 TGCATCAATGGCGATTCCAGATTCCTCACTCTTTTCTGCTTTTGACTTTAGCTC-T-A-G 229
Query 249 CTTCTTCTTCACGAAATGCCGTTGTTGTTAAAA 281
|||||||||||||||||||||||||||||||||
Sbjct 230 CTTCTTCTTCACGAAATGCCGTTGTTGTTAAAA 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126320362474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5