BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478175
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08720.1 | Symbols: ATPK19, ATS6K2, S6K2, ATPK2 | serine/thr... 2612 0.0
AT3G08730.1 | Symbols: ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | p... 1661 0.0
> AT3G08720.1 | Symbols: ATPK19, ATS6K2, S6K2, ATPK2 | serine/threonine
protein kinase 2 | chr3:2648509-2651160 REVERSE LENGTH=1814
Length=1814
Score = 2612 bits (1414), Expect = 0.0
Identities = 1599/1689 (95%), Gaps = 10/1689 (1%)
Strand=Plus/Plus
Query 1 TCTCGTCTCCTTCTCGTCTCCTTCCTCAAGCATATTCTCT--G-TTAGAGCAGCACGTTG 57
|||||||||||||||||||||||||||||||||||||||| | ||| | || || |||
Sbjct 36 TCTCGTCTCCTTCTCGTCTCCTTCCTCAAGCATATTCTCTGCGCTTA-A--AGTACTTTG 92
Query 58 ATGGCATTGGGACACTTGTGCAGCATCCACTGTTTCCTTAATATAGGGAAACAAGAAGAG 117
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 93 ATGGCATTGGGACACTTGTGCAGCATCCACTGTTTCCTTAAAATAGGGAAACAAGAAGAG 152
Query 118 CTTCTTCTCCTTGGTTTTGGTTTGCCTATTCCCAGTTTCTTCCTCATTTAACTTTTTTCT 177
|||||| |||| | | |||||||||||||||||||||||||||||| |||||||| ||
Sbjct 153 CTTCTTGTCCTAGATATTGGTTTGCCTATTCCCAGTTTCTTCCTCA-TTAACTTTATTGG 211
Query 178 TAGGAGACCCTCATCCATCTGGTGAACTTGTGAAGCTTTCTCTGTGCTTCTTTTGGCGAT 237
||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 212 TAGCAGAGCCTCATCCATCTGGTGAACTTGTGAAGCTTCCTCTGTGATTCTTTTGGCGAT 271
Query 238 TGGTTAGAGATATGGTTTCTTCTCAGTGTCCTGTTGCAAACAAAAACCAGACTGGGAAGC 297
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 272 TGGTTAGAAATATGGTTTCTTCTCAGTGTTCTGTTGCAAACAAAAACCAGACTGGGAAGC 331
Query 298 CGTTTCAGAAACAGCTATATTTATCCATCAGCCCTCCAAAATCTGTCTTGAATGATAACC 357
||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 332 CGTTTCAGAAACATCTATCTTTATCCATCAGCCCTCCAAAATCTGTCTTGGGTGATAACC 391
Query 358 TTGAGCTTGAATTCTCTGATGTGTTTGGTCCAATGCCTGAAGCTAACTCTGGGGAGGCCA 417
|||||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 392 TTGAGCTTCAATTCTCTGATGTCTTTGGACCAATGCCTGAAGCTAACTCTGAAGAGGCCT 451
Query 418 GTGATGTTGTTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCATTCGTTGGTGGGAC 477
||||||||| |||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 452 GTGATGTTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCATTGGTTGGCC 511
Query 478 CGTCTTTGGTTGTTAGCCATTCTTTGAAGTTGAACAAGCTCACTTTACGAGAGACTGAGG 537
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 512 CGTCTTTGGTTGTTAGCCATTCTTTGAAGATGAACAAGCTCACTTTACGAGAAACTGAGG 571
Query 538 ACTCAGTTGACTTGGTGGAGTGTGTTGAAGGTGAATCTATTAAAGAAAACGATGAATTCT 597
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 572 ACTCAGTTGACTTGGTGGAGTGTGTTGAAGGTGAATCGATAAAAGAGAACGATGAATTCT 631
Query 598 CTGGTAATGATGACACTGACAGTGACAAAGCTCTAGAGGAGGTCTCAGGTGTAGTAGGCA 657
||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 632 CTGGTAATGATGACACTGACAGTGAGAAATCTCCAGAGGAGGTCTCAGGTGTAGTAGGCA 691
Query 658 TTGAGGACTTTGAGGTATTGAAGGTTGTGGGGCAAGGTGCATTTGGGAAAGTGTACCAGG 717
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 692 TTGAGGACTTTGAGGTATTGAAGGTTGTGGGACAAGGTGCATTTGGAAAAGTGTACCAGG 751
Query 718 TGAGGAAAAAAGACACTTCTGAGATATACGCGATGAAGGTTATGAGAAAAGACAAGATTG 777
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 752 TGAGGAAAAAAGACACGTCTGAGATATACGCGATGAAGGTCATGAGAAAAGATAAAATTG 811
Query 778 TTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACCAAAATCGATC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACCAAAATCGATC 871
Query 838 ATCCTTTCATTGTCCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTGTATCTTGTGC 897
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 872 ATCCTTTCATTGTGCAACTTAAATACTCTTTTCAGACCAAATACAGATTGTATCTTGTTC 931
Query 898 TCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGGCTTTTCAGAG 957
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 932 TTGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGGCTTTTCAGGG 991
Query 958 AGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCATCTCCATGAGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCATCTCCATGAGA 1051
Query 1018 AAGGCATAATGCATAGAGATCTGAAACCTGAAAACATACTCATGGACGTAGATGGCCATG 1077
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1052 AAGGCATAATGCATAGAGATCTTAAACCTGAAAACATACTCATGGACGTAGATGGCCATG 1111
Query 1078 TGATGTTAACTGATTTTGGTTTAGCAAAGGAATTTGAAGAAAACACAAGATCAAACTCCA 1137
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1112 TGATGTTAACTGATTTTGGTTTAGCAAAAGAATTTGAAGAAAACACAAGATCAAACTCCA 1171
Query 1138 TGTGTGGGACTACGGAGTATATGGCCCCTGAAATTATTCGTGGAAAAGGACATGATAAGG 1197
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1172 TGTGTGGGACTACGGAGTATATGGCCCCTGAGATTGTTCGTGGAAAAGGACATGATAAGG 1231
Query 1198 CTGCCGACTGGTGGAGCGTAGGGATCCTTCTGTATGAGATGCTCACTGGAAAGCCGCCGT 1257
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1232 CTGCCGACTGGTGGAGTGTAGGAATCCTTCTGTATGAGATGCTCACTGGAAAGCCGCCGT 1291
Query 1258 TTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTAAAGGACAAGATCAAGCTTCCAC 1317
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1292 TTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTTAAGGACAAGATCAAGCTTCCAC 1351
Query 1318 AGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAAGAGCCAGAAA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 AGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAAGAGCCAGAAA 1411
Query 1378 GGAGACTGGGAAGTGGACCGAGCGGAGCAGATGAAATAAAACAGCACAAATGGTTCAAGG 1437
||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||
Sbjct 1412 GGAGACTGGGAAGTGGACCGAGCGGAGCAGAGGAGATAAAAAAACACAAATGGTTCAAGG 1471
Query 1438 TGATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTACAACCAAGTTTCAAGCCAGCAGTTT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1472 CGATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTACAACCAAGTTTCAAGCCGGCGGTTT 1531
Query 1498 CGGGAAGACAATGCATAGCAAATTTTGACAAGTGTTGGACTGAAATGTCTGTGTTGGATT 1557
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1532 CGGGAAGACAATGCATAGCTAATTTTGACAAGTGTTGGACTGACATGTCTGTTTTGGATT 1591
Query 1558 CTCCAGCAAGCAGTCCCAATTCTGATCCTAAGGCCAACCCTTTTTCTAACTTCACATACG 1617
|||||||||| |||||||| |||||| ||||||| ||||||||| | |||||||||||||
Sbjct 1592 CTCCAGCAAGTAGTCCCAACTCTGATGCTAAGGCGAACCCTTTTACAAACTTCACATACG 1651
Query 1618 TCAGGCCTCCTCCCTCATTCCTTCACCGAACCACATCCAACTTGTAGTAGATGAACTATA 1677
|||||||||||| ||||||||||| || |||||||||||||||||| | |||||||||
Sbjct 1652 TCAGGCCTCCTCATTCATTCCTTCATCGGACCACATCCAACTTGTAG-A--TGAACTATA 1708
Query 1678 ATATATTAC 1686
|||| ||||
Sbjct 1709 ATATGTTAC 1717
> AT3G08730.1 | Symbols: ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 |
protein-serine kinase 1 | chr3:2651447-2654212 REVERSE LENGTH=1864
Length=1864
Score = 1661 bits (899), Expect = 0.0
Identities = 1235/1393 (89%), Gaps = 39/1393 (3%)
Strand=Plus/Plus
Query 303 CAGAAACAGCTATATTTATCCATCAGCCCTCCAAAATCTGTCTTGAATGATAACCTTGAG 362
|||||||||| |||| |||||||||||||| |||| ||||||||||| ||| | ||||
Sbjct 369 CAGAAACAGCAATATCTATCCATCAGCCCTTCAAATTCTGTCTTGAAAGATGATGTTGAA 428
Query 363 CTTGAATTCTCTGATGTGTTTGGTCCAATGCCTGAAGCTAACTCTGGGGAGGCCAGTGAT 422
||||| |||||||||||||||||||| | || | | | | ||||||| ||||
Sbjct 429 CTTGAGTTCTCTGATGTGTTTGGTCC-A---CT----C---C-CCGAAGAGGCCAATGAT 476
Query 423 GTTGTTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCATTCGTTGGTGGGACCGTCT 482
||| |||||||||||||||||||||||||||||||||||| || ||||| || |||| |
Sbjct 477 ATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTTGGCCCGTGT 536
Query 483 TTGGTTGTTAGCCATTCTTTGAAGTTGAACAAGCTCACTTTACGAGAGACTGAGGACTCA 542
| | | | ||| |||||||||||| ||| ||||||||| |||| ||||||||||||||||
Sbjct 537 TCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACTAGAGACTGAGGACTCA 596
Query 543 GTTGACTTGGTGGAGTGTGTTGAAGGTGAATCTATT-AAAGAAAACGATGAATTCTCTGG 601
||||||||||||||||| | |||||||||||| || |||||||| ||||| ||||||||
Sbjct 597 ATTGACTTGGTGGAGTGTCTCGAAGGTGAATCT-TTAAAAGAAAATGATGATTTCTCTGG 655
Query 602 TAATGATGACACTGACAGTGACAAAGCTCTAGA--G-GA------G---GTCTCAGGTGT 649
|||||| |||| ||||| ||| |||||| |||| | || | |||||||||||
Sbjct 656 TAATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTCTCAGGTGT 715
Query 650 AGTAGGCATTGAGGACTTTGAGG-TATTGAAGGTTGTGGGGCAAGGTGCATTTGGGAAAG 708
||||||||| || || ||||||| || |||||||||| ||| ||||||| ||||||||||
Sbjct 716 AGTAGGCATAGATGATTTTGAGGTTA-TGAAGGTTGTTGGGAAAGGTGCGTTTGGGAAAG 774
Query 709 TGTACCAGGTGAGGAAAAAAGACACTTCTGAGATATACGCGATGAAGGTTATGAGAAAAG 768
| ||||||||||||||||| || || |||||||||||||| ||||| || ||||| ||||
Sbjct 775 TCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCTATGAAAGTCATGAGGAAAG 834
Query 769 A-CAAGATTGTTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACC 827
| | | ||| | |||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 835 ATC-ACATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGCGCGATATTCTTACA 893
Query 828 AAAATCGATCATCCTTTCATTGTCCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTG 887
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 894 AAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTG 953
Query 888 TATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGG 947
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 954 TATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAACTCTATCACCAAGGG 1013
Query 948 CTTTTCAGAGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCAT 1007
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTTTTCAGAGAGGACTTGGCTCGAGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCAT 1073
Query 1008 CTCCATGAGAAAGGCATAATGCATAGAGATCTGAAACCTGAAAACATACTCATGGACGTA 1067
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1074 CTCCATGAGAAAGGCATAATGCACAGAGATCTGAAACCCGAAAACATACTCATGGATACA 1133
Query 1068 GATGGCCATGTGATGTTAACTGATTTTGGTTTAGCAAAGGAATTTGAAGAAAACACAAGA 1127
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GATGGCCACGTGATGCTAACAGATTTTGGTTTAGCAAAGGAATTTGAAGAAAACACAAGA 1193
Query 1128 TCAAACTCCATGTGTGGGACTACGGAGTATATGGCCCCTGAAATTATTCGTGGAAAAGGA 1187
|||||||||||||| || ||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 1194 TCAAACTCCATGTGCGGAACTACGGAGTATATGGCACCTGAAATTGTTCGAGGAAAAGGA 1253
Query 1188 CATGATAAGGCTGCCGACTGGTGGAGCGTAGGGATCCTTCTGTATGAGATGCTCACTGGA 1247
|||||||| || || |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1254 CATGATAAAGCAGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTCACAGGA 1313
Query 1248 AAGCCGCCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTAAAGGACAAGATC 1307
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1314 AAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATTGTGAAGGACAAGATC 1373
Query 1308 AAGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAA 1367
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1374 AAGCTTCCGCAGTTTCTGTCTAATGAAGCTCATGCAATACTGAAAGGGCTGCTGCAAAAA 1433
Query 1368 GAGCCAGAAAGGAGACTGGGAAGTGGACCGAGCGGAGCAGATGAAATAAAACAGCACAAA 1427
|||||||||||| |||| |||||||||| |||||||||||| || |||||||||||||||
Sbjct 1434 GAGCCAGAAAGGCGACTTGGAAGTGGACTGAGCGGAGCAGAGGAGATAAAACAGCACAAA 1493
Query 1428 TGGTTCAAGGTGA-TAAACTGGAAGAAGCTGGAGGCTAGAGAAGT-ACAACCAAGTTTCA 1485
|||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1494 TGGTTCAAGG-GAATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTGATG-CCAAGTTTCA 1551
Query 1486 AGCCAGCAGTTTCGGGAAGACAATGCATAGCAAATTTTGACAAGTGTTGGACTGAAATGT 1545
|||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1552 AGCCGGAAGTATCGGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGACATGT 1611
Query 1546 CTGTGTTGGATTCTCCAGCAAGCAGTCCCAATTCTGATCCTAAGGCCAACCCTTTTTCTA 1605
|||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| | |
Sbjct 1612 CTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTTACCA 1671
Query 1606 ACTTCACATACGTCAGGCCTCCTCCCTCATTCCTTCACC-GAACCACATCCAACTTGTAG 1664
| ||||| ||||||||||||||||| ||||||||||||| | ||||| | | ||| | |
Sbjct 1672 ATTTCACTTACGTCAGGCCTCCTCCTTCATTCCTTCACCAGT-CCACAACTA-CTT-T-G 1727
Query 1665 TAGATGAACTATA 1677
||||| ||||||
Sbjct 1728 TAGATTTACTATA 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5