BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478176
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08730.1 | Symbols: ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | p... 2621 0.0
AT3G08720.1 | Symbols: ATPK19, ATS6K2, S6K2, ATPK2 | serine/thr... 1419 0.0
> AT3G08730.1 | Symbols: ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 |
protein-serine kinase 1 | chr3:2651447-2654212 REVERSE LENGTH=1864
Length=1864
Score = 2621 bits (1419), Expect = 0.0
Identities = 1654/1760 (94%), Gaps = 45/1760 (3%)
Strand=Plus/Plus
Query 1 ATACGGCCACGTGTCTGAATCCCTGGATCTGCGATGCTTTTCTTAAATTCTTCTCTCGTC 60
|||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct 4 ATACGGCCACGTGTATGAACCCCTGGATCTGCGATGCTGCTCTTAAATTCTCCTCTCGTC 63
Query 61 CTCATTTCCATCTTCGTCTCTTTCCTCAGCCATCCCCTCTGAGCTTATAAAACCTTCATG 120
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 64 CTCATTTCCATCTTCGTCTCCTCCCTCAGCCATCCCCTCTGAGCTTATAAAACCTTCATG 123
Query 121 GCATTTGCGCACTTCTGCAGCATCCACTGTTTCCTTAAAATCGGGAAACAACAAGAGCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GCATTTGCGCACTTCTGCAGCATCCACTGTTTCCTTAAAATCGGGAAACAACAAGAGCTT 183
Query 181 CTTCTCCTCGTTATTGGATTGCCTTTTGCCAACATTTTCCAGATCAGCACTTGTTTTAGT 240
|||||||| ||||||||||||||||||| |||| | | ||||||||||
Sbjct 184 CTTCTCCTTGTTATTGGATTGCCTTTTG----------CCAG--C--C-TTTGTTTTAGT 228
Query 241 CAGTTTTCTCCTCATTAACTTCTGTCGGTACAGAATCCCTCACCAGGCTGGTGGA-TACT 299
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | | ||
Sbjct 229 CAGTTTTCTCCTCATTAACTTCTGTCGGTACAGAATCTCTCTCCAGGCTGGTGAACT-CT 287
Query 300 TGAAGCTTTCTCAGTGATTCTGTATCGATTTTT-CGGTGTAAATTATGGTTTCCTCTCAG 358
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 288 TGCAGCTTTCTCAGTGATTCTGTATCGATTTTTCCCGTGTAAATTATGGTTTCCTCTCAG 347
Query 359 CGTCCTGTCCCCAACAAAATCCAGAAACAGCAATATCTATCTATCAGCCCTTCAAACTCT 418
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 348 CGTCCTGTCCCCAACAAAATCCAGAAACAGCAATATCTATCCATCAGCCCTTCAAATTCT 407
Query 419 TTCTTGAAAGATGATGTTGAGCTTGAATTCTCTGATGTGTTTGGTCCACTCCCTGAAGAA 478
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 408 GTCTTGAAAGATGATGTTGAACTTGAGTTCTCTGATGTGTTTGGTCCACTCCCCGAAGAG 467
Query 479 GCCAATGATATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GCCAATGATATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTT 527
Query 539 GGCCCGTGTTCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACGAGAGACT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 528 GGCCCGTGTTCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACTAGAGACT 587
Query 599 GAGGACTCAATTGACTTGGTGGAGTGTCTCGAAGGTGAATCTTTAAAAGAAAATGATGAG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GAGGACTCAATTGACTTGGTGGAGTGTCTCGAAGGTGAATCTTTAAAAGAAAATGATGAT 647
Query 659 TTCTCTGGTAATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TTCTCTGGTAATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTC 707
Query 719 TCAGGTGTAGTAGGCATAGATGATTTTGAGGTTATGAAAGTTGTTGGGAAAGGTGCGTTT 778
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 708 TCAGGTGTAGTAGGCATAGATGATTTTGAGGTTATGAAGGTTGTTGGGAAAGGTGCGTTT 767
Query 779 GGGAAAGTCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCGATGAAA---A-- 833
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 768 GGGAAAGTCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCTATGAAAGTCATG 827
Query 834 AG-AA----C-CATGCTG-A-AT-A-C-ATG---AA-A---G----CTGAGCGCGATATT 871
|| || | ||| || | | | | ||| || | | ||||||||||||||
Sbjct 828 AGGAAAGATCACATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGCGCGATATT 887
Query 872 CTTACAAAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTAC 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CTTACAAAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTAC 947
Query 932 AGGCTGTATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCAC 991
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 948 AGGCTGTATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAACTCTATCAC 1007
Query 992 CAAGGGCTTTTCAGGGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTT 1051
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1008 CAAGGGCTTTTCAGAGAGGACTTGGCTCGAGTGTACACTGCAGAAATCGTCTCTGCAGTT 1067
Query 1052 TCCCATCTCCATGAGAAAGGCATAATGCATAGAGATCTGAAACCCGAAAACATACTCATG 1111
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1068 TCCCATCTCCATGAGAAAGGCATAATGCACAGAGATCTGAAACCCGAAAACATACTCATG 1127
Query 1112 GACACAGATGGCCACGTGATGTTAACAGATTTTGGTTTAGCAAAAGAATTTGAAGAAAAC 1171
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1128 GATACAGATGGCCACGTGATGCTAACAGATTTTGGTTTAGCAAAGGAATTTGAAGAAAAC 1187
Query 1172 ACAAGATCAAACTCCATGTGCGGAACTACAGAGTATATGGCACCTGAAATCGTTCGAGGA 1231
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1188 ACAAGATCAAACTCCATGTGCGGAACTACGGAGTATATGGCACCTGAAATTGTTCGAGGA 1247
Query 1232 AAAGGACATGATAAAGCTGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTC 1291
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AAAGGACATGATAAAGCAGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTC 1307
Query 1292 ACAGGAAAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAACAGAAAATCGTGAAGGAC 1351
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1308 ACAGGAAAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATTGTGAAGGAC 1367
Query 1352 AAGATCAAGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCGATGCTGAAAGGGCTGCTG 1411
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1368 AAGATCAAGCTTCCGCAGTTTCTGTCTAATGAAGCTCATGCAATACTGAAAGGGCTGCTG 1427
Query 1412 CAAAAAGAGCCAGAGAGGCGTCTTGGAAGTGGACCGAGCGGAGCAGAGGAAATAAAACAG 1471
|||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 1428 CAAAAAGAGCCAGAAAGGCGACTTGGAAGTGGACTGAGCGGAGCAGAGGAGATAAAACAG 1487
Query 1472 CATAAATGGTTCAAGGGAATAAACTGGAAGAAGCTGGAGGCCAGAGAAGTGATGCCAAGT 1531
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1488 CACAAATGGTTCAAGGGAATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTGATGCCAAGT 1547
Query 1532 TTTAAGCCTGAAGTATCAGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGAA 1591
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TTCAAGCCGGAAGTATCGGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGAC 1607
Query 1592 ATGTCTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTT 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 ATGTCTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTT 1667
Query 1652 ACCAATTTCACATACGTCAGGCCTCCTCATTCATTCCTTCAACAGTCCACAACGACTTCG 1711
||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |||| |
Sbjct 1668 ACCAATTTCACTTACGTCAGGCCTCCTCCTTCATTCCTTCACCAGTCCACAACTACTTTG 1727
Query 1712 TAGATTTGCTATATTGTTAT 1731
||||||| ||||||| ||||
Sbjct 1728 TAGATTTACTATATTTTTAT 1747
> AT3G08720.1 | Symbols: ATPK19, ATS6K2, S6K2, ATPK2 | serine/threonine
protein kinase 2 | chr3:2648509-2651160 REVERSE LENGTH=1814
Length=1814
Score = 1419 bits (768), Expect = 0.0
Identities = 1188/1382 (86%), Gaps = 63/1382 (5%)
Strand=Plus/Plus
Query 380 CAGAAACAGCAATATCTATCTATCAGCCCTTCAAACTCTTTCTTGAAAGATGATGTTGAG 439
|||||||| | || | |||| ||||||||| |||| ||| ||||| ||| | |||||
Sbjct 337 CAGAAACATCTATCTTTATCCATCAGCCCTCCAAAATCTGTCTTGGGTGATAACCTTGAG 396
Query 440 CTTGAATTCTCTGATGTGTTTGG-----T-CC---A-CT--CCCTGAAGAAGCCAATGAT 487
||| ||||||||||||| ||||| | || | || | ||||||| ||| ||||
Sbjct 397 CTTCAATTCTCTGATGTCTTTGGACCAATGCCTGAAGCTAACTCTGAAGAGGCCTGTGAT 456
Query 488 ATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTTGGCCCGTGT 547
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 457 GTTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCATTGGTTGGCCCGTCT 516
Query 548 TCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACGAGAGACTGAGGACTCA 607
| | | | ||| |||||||||||| ||| ||||||||| |||||||| ||||||||||||
Sbjct 517 TTGGTTGTTAGCCATTCTTTGAAGATGAACAAGCTCACTTTACGAGAAACTGAGGACTCA 576
Query 608 ATTGACTTGGTGGAGTGTCTCGAAGGTGAATCTTTAAAAGAAAATGATGAGTTCTCTGGT 667
||||||||||||||||| | ||||||||||| ||||||| || ||||| |||||||||
Sbjct 577 GTTGACTTGGTGGAGTGTGTTGAAGGTGAATCGATAAAAGAGAACGATGAATTCTCTGGT 636
Query 668 AATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTTTCAGGTGTA 727
||||| |||| ||||| ||||||| || ||||| || ||| ||||||||
Sbjct 637 AATGATGACACTGACAGTGAGAAATCTCCAGAGG-AGGTCT-----------CAGGTGTA 684
Query 728 GTAGGCATAGATGATTTTGAGGTTAT-GAAAGTTGTTGGGA-AAGGTGCGTTTGGGAAAG 785
|||||||| || || |||||||| || ||| ||||| |||| ||||||| ||||| ||||
Sbjct 685 GTAGGCATTGAGGACTTTGAGGT-ATTGAAGGTTGT-GGGACAAGGTGCATTTGGAAAAG 742
Query 786 TCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCGATGAA----A--A-A---G 835
| ||||||||||||||||| || || |||||||||||||||||||| | | | |
Sbjct 743 TGTACCAGGTGAGGAAAAAAGACACGTCTGAGATATACGCGATGAAGGTCATGAGAAAAG 802
Query 836 A-ACCAT-GCTGA-AT-A--CATG---AA-AGC-TGA--GC-G--CG--ATATTCTTACA 877
| | || | ||| | | |||| || | | ||| || | || ||||||| ||
Sbjct 803 ATAAAATTGTTGAGAAGAATCATGCTGAATA-CATGAAAGCCGAGCGCGATATTCTAACC 861
Query 878 AAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTG 937
||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 862 AAAATCGATCATCCTTTCATTGTGCAACTTAAATACTCTTTTCAGACCAAATACAGATTG 921
Query 938 TATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGG 997
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TATCTTGTTCTTGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGG 981
Query 998 CTTTTCAGGGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCAT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CTTTTCAGGGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCAT 1041
Query 1058 CTCCATGAGAAAGGCATAATGCATAGAGATCTGAAACCCGAAAACATACTCATGGACACA 1117
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 1042 CTCCATGAGAAAGGCATAATGCATAGAGATCTTAAACCTGAAAACATACTCATGGACGTA 1101
Query 1118 GATGGCCACGTGATGTTAACAGATTTTGGTTTAGCAAAAGAATTTGAAGAAAACACAAGA 1177
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GATGGCCATGTGATGTTAACTGATTTTGGTTTAGCAAAAGAATTTGAAGAAAACACAAGA 1161
Query 1178 TCAAACTCCATGTGCGGAACTACAGAGTATATGGCACCTGAAATCGTTCGAGGAAAAGGA 1237
|||||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||
Sbjct 1162 TCAAACTCCATGTGTGGGACTACGGAGTATATGGCCCCTGAGATTGTTCGTGGAAAAGGA 1221
Query 1238 CATGATAAAGCTGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTCACAGGA 1297
|||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||| |||
Sbjct 1222 CATGATAAGGCTGCCGACTGGTGGAGTGTAGGAATCCTTCTGTATGAGATGCTCACTGGA 1281
Query 1298 AAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAACAGAAAATCGTGAAGGACAAGATC 1357
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1282 AAGCCGCCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTTAAGGACAAGATC 1341
Query 1358 AAGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCGATGCTGAAAGGGCTGCTGCAAAAA 1417
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1342 AAGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAA 1401
Query 1418 GAGCCAGAGAGGCGTCTTGGAAGTGGACCGAGCGGAGCAGAGGAAATAAAACAGCATAAA 1477
|||||||| ||| | || |||||||||||||||||||||||||| |||||| | || |||
Sbjct 1402 GAGCCAGAAAGGAGACTGGGAAGTGGACCGAGCGGAGCAGAGGAGATAAAAAAACACAAA 1461
Query 1478 TGGTTCAAGG-GAATAAACTGGAAGAAGCTGGAGGCCAGAGAAGTG-ATGCCAAGTTTTA 1535
|||||||||| || |||||||||||||||||||||| |||||||| | |||||||| |
Sbjct 1462 TGGTTCAAGGCGA-TAAACTGGAAGAAGCTGGAGGCTAGAGAAGTACAA-CCAAGTTTCA 1519
Query 1536 AGCCTGAAGTATCAGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGAAATGT 1595
|||| | || || ||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1520 AGCCGGCGGTTTCGGGAAGACAATGCATAGCTAATTTTGACAAGTGTTGGACTGACATGT 1579
Query 1596 CTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTTACCA 1655
|||||||||||||||| || || ||||||| || ||| ||||||| ||||||||||| |
Sbjct 1580 CTGTTTTGGATTCTCCAGCAAGTAGTCCCAACTCTGATGCTAAGGCGAACCCTTTTACAA 1639
Query 1656 ATTTCACATACGTCAGGCCTCCTCATTCATTCCTTCAACAGTCCACAACGA-CTTCGTAG 1714
| ||||||||||||||||||||||||||||||||||| | | ||||| | | ||| ||||
Sbjct 1640 ACTTCACATACGTCAGGCCTCCTCATTCATTCCTTCATCGGACCACATCCAACTT-GTAG 1698
Query 1715 AT 1716
||
Sbjct 1699 AT 1700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5