BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478178
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08760.1 | Symbols: ATSIK | Protein kinase superfamily prote... 3088 0.0
> AT3G08760.1 | Symbols: ATSIK | Protein kinase superfamily protein
| chr3:2657918-2660889 REVERSE LENGTH=2147
Length=2147
Score = 3088 bits (1672), Expect = 0.0
Identities = 1994/2142 (93%), Gaps = 52/2142 (2%)
Strand=Plus/Plus
Query 1 CTCTAAAATCTCTCACTTTCCTAAACAGACAGACCCCTTATGAG--tt-tcctcct--t- 54
||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |
Sbjct 1 CTCTAAAATCTCTCACTTTCCTAAACAGAGAGACCCCTTATGAGTTTTCTCCTCCTCCTC 60
Query 55 ct--tctt-ctt-ct--tcccagaaatttccgatttcattttcgcatct--ctctttc-t 105
|| |||| ||| || ||||||||||||||||||||| |||| ||||| |||| || |
Sbjct 61 CTCCTCTTCCTTCCTCATCCCAGAAATTTCCGATTTCACTTTCACATCTCCCTCTCTCTT 120
Query 106 -c-tctctctAGCCGCAGTTTCAGTTTGGT-CT-CCTTTTGTTTGT-TTGAATCAT-TTT 159
| ||||||| ||| ||||||||||| || || ||| ||| | ||| || | ||
Sbjct 121 ACAACTCTCTATCCGTAGTTTCAGTTTCGTCCTAGAATTTCTTT-TCTTG--TC-TGTTC 176
Query 160 CAGATGAAATTGTGAGTTCTCAGAGTTTTATGCATCCGTTAGAATCAAAGTGGTAAT--- 216
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 177 CAGATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGTAATCAA 236
Query 217 ---C-------a-a--a---aaaaCGATGGTTTTGGGGTGTTTCCCTTTAAAAAGCAAGA 260
| | | | |||| |||||||||||||||||||||||| ||||||||||
Sbjct 237 AAGCAGAATTTAGAGGATTGAAAAAGATGGTTTTGGGGTGTTTCCCTTTGAAAAGCAAGA 296
Query 261 AGAAACGTGGCTCTGTTTCTATGAAGCGGTTAGATCTTGAAGAAAGCAAGCCAACTGCTT 320
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 AGAAACGTGGCTCTGTTTCTATGAAGCGGTTGGATCTTGAAGAAAGCAAGCCAACTGCTT 356
Query 321 TACCTGAGCCACCAAAGATTCCAAGTCGTAATTTACAATCAGCTCCTCCGAGTTTCAGAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TACCTGAGCCACCAAAGATTCCAAGTCGTAATTTACAATCAGCTCCTCCGAGTTTCAGAA 416
Query 381 CTCGTGTGAAGCCAATTCAATCTAACAACGGTGGAACCGGAGAGATGAGTAGTCGGGCAA 440
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 417 CTCGTGTGAAGCCAATTCAATCTAACAACGGTGGAACCGGAGAGATGAGTAGCCGAGCAA 476
Query 441 GAGTCATGTCTGCTCCATCAAGCATCCACGGTGCAGCGGAACGGGATTTCCTTGCTGGTG 500
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 GAGTCATGTCTGCTCCGTCAAGCATCCACGGTGCAGCGGAACGGGATTTGCTTGCTGGTG 536
Query 501 TTTACCACGACGAGCAAGATGAACAACCAAGAGATCCACGTACTTCTACTAAAGAGTCTA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 537 TTTACCACGACGAGCAAGATGAACAACCAAGAGATCCACGTACTTCTACTAAAGAATCTA 596
Query 561 GCCCTCAACCGCTTCCGTTACCATCACCAAGAACTGGTTCTTCGTTGAAGAATTGGGGGA 620
|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 597 GCCCTCAACCACTTCCGTTACCGTCACCAAGAACTGGTTCTTCATTGAAGAATTGGGGAA 656
Query 621 GCTTTAAGTCGTTTAACGGAAGCAGCGGTCGGTTATCCTCATCCGCAGCTGTATCTGGAC 680
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 657 GCTTTAAGTCGTTTAACGGAAGCAGCGGTCGGTTATCATCATCCGCAGCTGTATCTGGAC 716
Query 681 CTTTACCTTTGCCACCTAGCGGGTCAGTTAGGAGCTTTTCATATGATGAAGTTATGGCTG 740
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 CTTTACCTTTGCCACCTAGCGGGTCAGTTAGGAGCTTTTCATATGATGAAGTAATGGCTG 776
Query 741 CCTGTAACGCTTTTTCGTCTGACCGATGCGTCGTGGAGGGTCTTTCATCTGTTATGTATA 800
| |||||||||||||| || |||||||| ||| |||| |||||||||||||||||||| |
Sbjct 777 CGTGTAACGCTTTTTCTTCAGACCGATGTGTCATGGAAGGTCTTTCATCTGTTATGTACA 836
Query 801 TGGCTTCCTTTGGTGATGAGGCTTCGACCTCAGGCTTAAAGAAGGTTGACGCAACTGTTG 860
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 TGGCTTCCTTTGGTGATGAGGCTTCGACCTCAGGTTTAAAGAAGGTTGACGCAACTGTTG 896
Query 861 TGCGACTTCACGTAACTACACAGAGTATCAGGGAGTTCATTAATGAAGTCAACACATTGG 920
| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 897 TACGACTTCACGTAATTACTCAGAGTATTAGGGAGTTCATTAATGAAGTCAACACATTGG 956
Query 921 CGTCGCTGCAACACCAGAATCTTTGTAAGCTGGCAGGCTATCATGCCCGTGACGGTTCTG 980
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 957 CGTCGCTGCAACACCAGAACCTTTGTAAGCTGGTAGGCTATCATGCTCGTGACGGTTCTG 1016
Query 981 ACACAAGAATGTTGGTGTACGAGAGGCTTGCTCTCGGG-AGCCTGGACCGGTTACTCCAT 1039
|||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| |||
Sbjct 1017 ACACAAGAATGTTGGTGTACGAGAGGCTTGCTCT-GGGCAGCTTGGACCGTTTACTGCAT 1075
Query 1040 GGGAGATCAGATGGGCCTCCTCTTGATTGGAACACTAGAATGAAGATTGCTCTATGCGCA 1099
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1076 GGGAGATCAGATGGGCCTCCTCTTGATTGGAACACTAGAATGAAGATTGCACTATGCGCA 1135
Query 1100 GCGCAGGGCCTAACCTTCTTGCATGAAGAAGGTCCTTTTCAGGCAATGTACAATGAATTT 1159
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1136 GCTCAGGGTCTAACCTTCTTGCACGAAGAAGGCCCTTTTCAGGCAATGTACAATGAATTT 1195
Query 1160 TCGACGGCGAATATCCAAGTCGATAAAGATTTCAGCGCCAAGCTATCAGGATACGGTTGC 1219
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCGACGGCAAATATCCAAGTCGATAAAGATTTCAGCGCCAAGCTATCAGGATACGGTTGT 1255
Query 1220 GCAGGCCATGCGCCTGAGACAGAGACATCTAATAGTTCAGCACTTGCGAATCTCCCGGTC 1279
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |||
Sbjct 1256 GCAGGCCATGCGCCTGAGACAGAGACATCTAATAGTTCGGCACTTGCTAATCTCTCTGTC 1315
Query 1280 GAGACTCTAGAGAGAGGGATTTTGACCCCAAAGAGCAATGTGTGGAGCTATGGAATAGTT 1339
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1316 GAGACTCTAGAGAGAGGGCTTTTGACCCCGAAGAGCAATGTGTGGAGCTATGGAATAGTT 1375
Query 1340 CTTCTTGAGATGTTGACGGGGCGGAAAAACATGGACGGGTCTTACCCGAAAGAAGAGAGG 1399
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1376 CTTCTTGAGATGTTAACGGGTCGGAAAAATATGGACGGGTCTTACCCGAAAGAAGAGAGG 1435
Query 1400 AACTTAGTGAAATGGAGCAGAGCTTTCCTAGCAGACGATTGCAGGCTCTCGCTTATAATG 1459
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1436 AACTTAGTGAAATGGAGCAGAGCTTTTCTAGCAGATGATTGCAGGCTCTCGCTTATAATG 1495
Query 1460 GATCCTCAGCTTAAAGGTCGGTTTCCGGCAAAAGCGGCAAGGAGCATAGCAGATATAGCA 1519
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1496 GATCCTCAGCTTAAAGGTCGGTTTCCGGCAAAAGCGGCTAGGAGCATAGCAGATATAGCA 1555
Query 1520 CAAAAATGTCTGCAGGTGGAACCATCAGAGCGTCCAACCATGAGAAACATCGTGGATCAA 1579
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1556 CAGAAATGTCTGCAGGTGGAGCCTTCAGAGCGTCCAACCATGAGAAACATCGTGGATCAA 1615
Query 1580 CTTAAGATCATACAGGACATGAAGTACTCGTGTAGGTTCCCTTTAAGAGAACCCGCGCCA 1639
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1616 CTCAAGATCATACAGGACATGAAGTACTCGTGTAGGTTCCCATTGAGAGAACCCGCACCG 1675
Query 1640 GTCACAGCAAGGAAACATATGGGAAGATCAAGCAGTCTGAACACGATTATTTGGACCCCA 1699
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1676 GTCGTGGCAAGGAAACATATGGGAAGATCAAGCAGTCTCAACACGATTATTTGGACCCCG 1735
Query 1700 TCATCAGTGCCACCAAGGTCGAGTTTTTCACCGTCGCCTCCACCACGACGACCGTCGGTT 1759
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1736 GCATCAGTGCCACCAAGGTCGAGTTTTTCACCGTCACCTCCACCACGACGACCGTCTGTC 1795
Query 1760 TCACCCACAAGGGGACGGGCGCTCGTGTTTCCGCCAGTGTTTCCGCCGAGAGCGTGTTCA 1819
|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1796 TCACCCACAAGGGGACGGACGCTCGTGTTTCCCCCAGTGTTTCCGCCGCGAGCGTGTTCA 1855
Query 1820 TCGTTGGAGGAAATGGCTAGGGAAGAGGTTCGGAGATCGTCTTCAGCCAGTGGTAGGAGA 1879
|| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1856 TCTTTGGAGGAAATGGCTCGGGAAGAGGTTCGAAGATCGTCTTCAGCCAGTGGTAGGAGA 1915
Query 1880 ACTAGCCTCGAAGGGttttgatttgttcatatctctcttctttcttctttt-cctatttg 1938
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1916 ACTAGCCTCGAAGGGTTTTGATTTGTTCATATCTCTCTTCTTTCTTCTTTTTCCTATTTG 1975
Query 1939 ttttaaatttttggtgttgatttgttttttggattccaaatataaaaagtttgttttttt 1998
|||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1976 TTTTTAATTTTTGGCGTTGATTTGTTTTTTGGATTCCAAATATAAAAAATT-GTTTTTTT 2034
Query 1999 cttttttctttttGTTATTTATGAATCCGGACGTCGATAGAGAGGGTTTGTGATGTT--G 2056
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2035 CTTTTT-CTTTT-GTTGTTTATGAATCCGGACGTCGATAGAGAGGGTTTGTGATGTTTTG 2092
Query 2057 TACATAATAATCAACATTTCTTCTTTCAGATCAAAAAGAGAT 2098
|||||||||||||||||||||||||||| || ||||||||||
Sbjct 2093 TACATAATAATCAACATTTCTTCTTTCACATTAAAAAGAGAT 2134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104015529240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5