BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478179
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08770.2 | Symbols: LTP6 | lipid transfer protein 6 | chr3:2... 643 0.0
> AT3G08770.2 | Symbols: LTP6 | lipid transfer protein 6 | chr3:2664130-2664834
REVERSE LENGTH=604
Length=604
Score = 643 bits (348), Expect = 0.0
Identities = 500/569 (88%), Gaps = 27/569 (5%)
Strand=Plus/Plus
Query 1 ACAAACACACCAACaaaaaaaaaaCAGAAAGTAACATGAGATCTCTTTTACTAGCCGTGT 60
||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 16 ACAAATACACCAAAAAAAAAAAAACAGAAAGTAACATGAGATCTCTCTTATTAGCCGTGT 75
Query 61 GCCTGGTTCTTGCTTTGCACTTTGGTGAAGCAGCCGTGTCTTGCAACACGGTGATTGCGG 120
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 76 GCCTGGTTCTTGCTTTACACTGCGGTGAAGCAGCCGTGTCTTGCAACACGGTGATTGCGG 135
Query 121 ATCTTTACCCTTGCCTCTCGTACGTGACTCAGGGCGGACCGGTCCCAAGCCTCTGCTGCA 180
|||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct 136 ATCTTTACCCTTGCTTATCCTACGTGACTCAGGGCGGACCGGTCCCAACCCTCTGCTGCA 195
Query 181 ACGGTCTCACAACACTCAACAGTCAGGCTCAAACTTCTGCGGACCGTCAGGGCGTCTGTC 240
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 196 ACGGTCTCACAACACTCAAGAGTCAGGCTCAAACTTCTGTGGACCGTCAGGGGGTCTGTC 255
Query 241 GTTGCATCAAATCTGCAATTGGAGGACTTACTCTCTCTCCTAGCACCATCGACAATGCTT 300
|||||||||||||||| ||||||||||| |||||||||||||| |||||| | |||||||
Sbjct 256 GTTGCATCAAATCTGCTATTGGAGGACTCACTCTCTCTCCTAGAACCATCCAAAATGCTT 315
Query 301 TGTCTTTGCCTTCGAAATGTGGTATTAACCTCCCTTACAAGTTCAGCCCTTCCACCAACT 360
|| |||||||| ||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 316 TGGAATTGCCTTCTAAATGTGGTGTCGATCTCCCTTACAAGTTCAGCCCTTCCACTGACT 375
Query 361 GCGACAGTATTAAGTGAGGCAAGCAGAAAATCTTAAAGGAAGCTACTACTA---CTACAA 417
|||||||| | | | |||||||||||||||||||||||||||||| | ||| ||
Sbjct 376 GCGACAGTG--A-G--A--CAAGCAGAAAATCTTAAAGGAAGCTACTACAAGAACTATAA 428
Query 418 GAACTTTAATAACCTAATAATATT-GGT--TTGCTA-GCTAGTTGC-AACGTTGATCAGT 472
||| | ||||| |||||| || || ||| | ||||||||| || |||||||||
Sbjct 429 TAACCT-AATAAT-TAATAA-ATGAGGGCATTGGTTTGCTAGTTGCTAA--TTGATCAGT 483
Query 473 GATGTATTGTCATTTCGAATGTTCTAATATAATATCAGCGCAGGCTCTTATCTCTGAAAC 532
||||||||||||||| |||||||||||||| |||| |||| ||||||||||||||
Sbjct 484 GATGTATTGTCATTTTGAATGTTCTAATAT-----CAGC--AGGCACTTATCTCTGAAAC 536
Query 533 ATTCTCCATGCTTCCACCCTACACACATA 561
||||||||||||||||||||| |||||||
Sbjct 537 ATTCTCCATGCTTCCACCCTATACACATA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5