BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478180
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1840 0.0
> AT3G08780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: male
gametophyte, cultured cell; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage; Has 129 Blast hits to
129 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa
- 96; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr3:2666079-2667533 REVERSE
LENGTH=1320
Length=1320
Score = 1840 bits (996), Expect = 0.0
Identities = 1200/1296 (93%), Gaps = 23/1296 (2%)
Strand=Plus/Plus
Query 2 AGAGATTTCAGTGACGTCACATCGTTTCCCTTTTTGTGTTCTTCTTCGTCGCCATGGACG 61
||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||
Sbjct 31 AGAGATTTCAGTGACGTCACATC-TTTTCCTTTTGGTGTTCTTC-TCGTCGCCATGGACG 88
Query 62 ACCTCTCTCTAGAGAAAATCGAGATATCGGGTCCAACATTGGCGTCACTGATTCAACGAG 121
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 89 ATCTCTCTCTAGAGAAAATCGAGATTTCGGGTCCAACATTGGCGTCACTGATTCAACGAG 148
Query 122 CTTCCTCTTCTCCCAGTGACGTCGATGGCTTGATCTTCGGCCAAATCCACCGCATCGTCT 181
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 149 CTTCATCTTCTCCCAGTGACGTCGATGGCTTGATCTTCGGCCAAATCCACCGAATCGTCT 208
Query 182 CTTCCAATCTTTACGACGATTCTCCGGCGGATTTCGCCTCGAG-T--TCCTCATCTGATC 238
|||| ||||| | ||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct 209 CTTCTAATCTATCCGACGATTCTCCGGCGGATATCGCCTCGAGTTCCTCCTCATCTGATC 268
Query 239 AAATTGTCGCCACCGTTACAAGCTTTATTTGCTCTGGTAAGACTGTCTCATTCTATGATC 298
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 269 AAATTGTCGCCACCGTTACAAGCTTTATCTGCTCTGGTAAAACTGTCTCCTTCTACGATC 328
Query 299 CGCTTGGCCGAGTTGACTCGCGTCGAATCGATTCCCTCCGAGTCGACTCACCGGACCGCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 329 CGCTTGGCCGAGTTGACTCGCGTCGAATCGATTCCCTCCGAGTCGACTCACCGGACCACC 388
Query 359 TAATTGGCTGGTTCTCCGCCCGCAGGAAAACCGCTAAACGTCCATCTATGAGAGAGTTAG 418
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 389 TAATTGGGTGGTTCTCCGCCCGCAGGAAAACCGCTAACCGTCCATCAATGAGAGAGTTAG 448
Query 419 CCGTCGCGTCGTCTCTCTCGTCTCAATTTCACTTACCGATCGAGGATTCGCAAAACCCTA 478
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 449 CCGTCACGTCGTCTCTCTCGTCTCAATTTCACTTACCAATCGAGGATTTGCAAAACCCTA 508
Query 479 AATCGACGAACATGGCTTCCTCCGTGTTCTTTCTTCTTACTACGCCATCGACGAATCAGT 538
||||| |||||||||||| |||||||||||||||||||||| ||||| |||| ||||||
Sbjct 509 GATCGATGAACATGGCTTCATCCGTGTTCTTTCTTCTTACTATGCCATTGACGGATCAGT 568
Query 539 GCATCCACACGCACGAGTACCGTGCGTACCAGTTCCGACCCTCGAAACAACGGCTCGAAC 598
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 569 GCATTCACACGCACGAGTACCGTGCGTACCAGTTCCGATCCTCGAAACAACGGCTCGAAC 628
Query 599 CGAGATCCGTTGCTATAGTCAACATTGGACCAGCGTTTCGAGGCCATTACGGTTCGTTTA 658
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CTAGATCCGTTGGTATAGTCAACATTGGACCAGCGTTTCGAGGCCATTACGGTTCGTTTA 688
Query 659 GTCCAAAATCGGGATTTCCACCGTTGATCTGCGAGTTGAGTAGCTCAGCCATGAGCGTGG 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GTCCGAAATCGGGATTTCCACCGTTGATCTGCGAGTTGAGTAGCTCAGCCATGAGCGTGG 748
Query 719 ATTGCGATGAGAGTTCCTTAAGTGCGAAGAAACAATCAGCAAAAGATCAGAAGGAGATTG 778
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 749 ATTGCGATGAGAGTTCCTTGAGTGCGAAGAAACAATCAGCGAAAGATCAGAAGGAGATCG 808
Query 779 ATGCGTTAGCAGAGGGGTTTCAAGTTGGAG-GTTTGAAACGTTTGGTTGGAGCTGAAGCT 837
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 809 ATGCGTTAGCAGAGGGGTTTCAAGTTGGAGAGTT-GAAACGTTTGGTTGGAGCTGAAGCT 867
Query 838 GCGAATTACACTGGCGGGATTGAAGAAATGTATGAGAGAATGTTGGCGAAGATCGAAAGC 897
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 868 GCGAATTACACAGGCGGGATTGAAGAAATGTATGAGAGAATGCTGGCGAAGATCGAGAGC 927
Query 898 TTGGCTTCTGATGTTGAGAAGAGCTCAGCTAGGGTATTTGAACAGGTAAAGCATAATAGG 957
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 928 TTGGCTTCTGATGTTGAGAAGAGCTCGGCTAGGGTATTTCAACAGGAAAAGCATAATAGG 987
Query 958 AAGTTGAGAAACAG-GATAGCCAGAATCGGGCGATGAAGCTTCTCTTGAATTTCTGTTTT 1016
|||||||||||| | | |||||||||||||| ||||| |||||| |||||||||| ||
Sbjct 988 AAGTTGAGAAACCGAG-TAGCCAGAATCGGGAGATGAGGCTTCTTTTGAATTTCT-TTAA 1045
Query 1017 TTGTTTTCT-TCTA-TC-ACTATACTTGGAATTTTA-CCTT-A-ATCCCTGAGA-AC-AC 1068
||||| | || | || | ||||||||||||| | || | | | ||| | | |
Sbjct 1046 G-GTTTTTTATCGAGTCTA-TATACTTGGAATTCAATCCAAGAGAACACTG-GCTAGTAG 1102
Query 1069 TGGCTAGCGTAATTGGAGCTATATGCGGGAAACCATTTGTATTATAGTGTAGCTATTTCC 1128
||||||||| ||| ||| ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 1103 TGGCTAGCGCAATCGGAACTATATGCGGGAAACGATTTGTATTATAGTTTAGCGATTTCC 1162
Query 1129 TAGTCAAACCTTTCCTGGCTAGATTGCTTTGTCACAAGAGATCCCTTTACCTTGTATGAC 1188
|||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 1163 TAGTTAAACCTTTCCTGGCTAGATTGATTTGTCACAAGAGATCCCTTTTCCTTGTATGGC 1222
Query 1189 CAGTTTTTGTTTGAGGAGAA-CAATCAAGAATGGGATTGATTCATGTCAAGAGTT-CTAT 1246
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1223 TAGTTTTTGTTTGAAGAGAAACAATCAAGAATGGGATTGATTCATGTCAAGAGTTTCTAT 1282
Query 1247 AAATGGGCGTATAATATTTGTTTATGAAGTTTAATA 1282
|| |||||||||||||| ||||||||||||||||||
Sbjct 1283 AATTGGGCGTATAATATATGTTTATGAAGTTTAATA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5