BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478184
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3382 0.0
> AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:2677118-2679179 REVERSE LENGTH=2062
Length=2062
Score = 3382 bits (1831), Expect = 0.0
Identities = 1987/2064 (96%), Gaps = 4/2064 (0%)
Strand=Plus/Plus
Query 1 ATGAGCATCGTCACCGTCCCATCATCAACGTCAAAAGTCCAGCAAATCAAAACCCTAATC 60
||||||||||||||||| |||||| |||| |||||||||||||| |||||||| ||||||
Sbjct 1 ATGAGCATCGTCACCGTTCCATCAGCAACATCAAAAGTCCAGCAGATCAAAACTCTAATC 60
Query 61 TCCGTCGCATCCACCTTCAATCATCTGAAACAAATCCACGTCTCTCTCATTCACCACCAT 120
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TCCGTCGCATGCACCGTCAATCATCTGAAACAAATCCACGTCTCTCTCATTAACCACCAT 120
Query 121 CTCCACCACGACACCTTCCTCGCCAACCTCCTCCTCAAGCGAACTCTCTTCTTCCGCCAA 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCACCACGACACCTTCCTCGTCAACCTCCTCCTCAAGCGAACTCTCTTCTTCCGCCAA 180
Query 181 ACCCATTACTCTTTTCTCCTCTTCTCTCATACCCAATTCCCCAACATTTTTCTCTACAAT 240
||| | ||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 ACCAAATACTCCTATCTCCTCTTCTCTCATACCCAATTCCCCAACATTTTCCTCTACAAT 240
Query 241 ACTCTCATCAATGGCTTCGTCAACAATCATCTCTTCCATGAAACCCTCGATCTCTTCCTC 300
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTCTCATCAATGGCTTCGTCAATAATCATCTCTTCCATGAAACCCTCGATCTCTTCCTC 300
Query 301 TCCATCCGCAAACATGGTCTCAACCTCCATGGTTTCACATTCCCTTTGGTTCTCAAGGCC 360
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 301 TCCATCCGCAAACATGGTCTCTACCTCCATGGTTTCACCTTCCCTTTGGTTCTCAAGGCA 360
Query 361 TGCACCAGAGCCTCGAATCGCAAGCTTGGGATTGATCTTCATTCCCTTGTGGTCAAATGT 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCACCAGAGCCTCGAGTCGCAAGCTTGGGATTGATCTTCATTCCCTTGTGGTCAAATGT 420
Query 421 GGGTTTAATCACGATGTGGCCGCTATGACGAGCCTGCTTTCTATCTACTCTGGATCCGGG 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GGGTTTAATCACGATGTGGCCGCTATGACGAGCCTGCTCTCTATCTACTCTGGATCCGGG 480
Query 481 CGTTTGAATGATGCCCACAAAGTGTTCGAGGAAATTCCTGAGAGAAGCGTTGTAACTTGG 540
||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||
Sbjct 481 CGTTTGAATGATGCCCACAAACTGTTCGACGAAATTCCTGACAGAAGCGTTGTTACTTGG 540
Query 541 ACGGCTTTGTTTAGTGGGTATACGACTGCCGGAAAG-CACAGGGAAGCCATTGGTTTGTT 599
||||||||||||||||||||||| ||| | || ||| |||||||||||||||| ||||||
Sbjct 541 ACGGCTTTGTTTAGTGGGTATACTACTTCAGG-AAGACACAGGGAAGCCATTGATTTGTT 599
Query 600 TAAGAAGATGGTGGAGATGGGTCTGAGACCCGATAGCTACTTTATTGTTCAGGTTTTATC 659
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 600 TAAGAAGATGGTGGAGATGGGTGTGAAACCCGATAGCTACTTTATTGTTCAGGTTTTATC 659
Query 660 TGCTTGTGTTCATGTAGGGGATCTCGACAGCGGGGAGTGGATAGTTAAGCACATGGAAGA 719
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 660 TGCTTGTGTTCATGTAGGGGATCTCGACAGTGGGGAGTGGATAGTTAAGTACATGGAAGA 719
Query 720 GATGGAGATGCAGAAGAATTCCTTTGTGCGCACAACACTTGTCAATCTCTATGCCAAGTG 779
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 GATGGAGATGCAGAAGAATTCCTTTGTGCGGACAACACTTGTCAATCTCTATGCCAAGTG 779
Query 780 TGGGAAGATGGAGAAAGCCCGTTCTGTTTTCGACTCGATGGGT-GAGAAAGATATAGTTA 838
|||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 780 TGGGAAGATGGAGAAAGCACGTTCTGTTTTCGACTCGAT-GGTGGAGAAAGATATAGTTA 838
Query 839 CTTGGAGCACTATGATACAAGGGTATGCATCGAACAGCTTCCCGAAAGAAGGAATAGAGT 898
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 CTTGGAGCACTATGATACAAGGGTATGCATCGAACAGCTTCCCAAAAGAAGGAATAGAGT 898
Query 899 TCTTTCTTCAGATGTTGCAAGAAAATCTGAAACCGGACCAGTTTTCCATTGTCGGGTTTC 958
| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 899 TATTTCTCCAGATGTTGCAGGAAAATCTGAAACCGGACCAGTTTTCTATTGTCGGGTTTC 958
Query 959 TTTCTTCTTGTGCAAGCTTAGGAGCGCTTGATCTAGGTGAATGGGGAATTAGTTTAATAG 1018
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 TTTCGTCTTGTGCAAGCTTAGGAGCCCTTGATCTAGGTGAATGGGGAATTAGTTTAATAG 1018
Query 1019 GTAGGCATGAGTTCTTGACCAATATTTTTATGGCCAATGCGCTGATAGACATGTATGCGA 1078
|||||||||||| ||||||||| | |||||||||||||| ||||| |||||||| ||||
Sbjct 1019 ATAGGCATGAGTTTTTGACCAATCTGTTTATGGCCAATGCCCTGATCGACATGTACGCGA 1078
Query 1079 AATGTGGGGCTATGGCTCGAGGTTTTGAATTATTCAAAGAAATGAAGGAGAAAGATATAG 1138
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1079 AATGTGGGGCTATGGCTCGAGGTTTTGAAGTATTTAAAGAAATGAAGGAGAAAGATATAG 1138
Query 1139 TTATCATGAATGCTGCAATTTCTGGTCTGGCCAAGAATGGCCACGTGAAGCTCTCATTTG 1198
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 TTATCATGAATGCTGCAATTTCTGGTCTGGCCAAGAATGGCCACGTTAAGCTCTCATTTG 1198
Query 1199 CGGTTTTTGGACAAACAGAGAAGTTAGGTATCTCACCTGATGGGTCCACTTTCCTTGGAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 CGGTTTTTGGACAAACAGAGAAGTTAGGTATCTCACCTGATGGGTCCACGTTCCTTGGAC 1258
Query 1259 TGCTCTGTGGGTGCGTTCACGCAGGCCTAATTCAAGACGGGCTTCGGTTTTTTAACGCCA 1318
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 1259 TGCTCTGTGGGTGCGTTCACGCAGGCCTAATCCAAGACGGGCTTCGGTTTTTCAATGCCA 1318
Query 1319 TAAGCTGTGTTTACGCTTTGAAACGCACGGTTGAGCACTATGGTTGCATGGTAGATCTTT 1378
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAAGCTGTGTTTATGCTTTGAAACGCACGGTTGAGCACTATGGTTGCATGGTAGATCTTT 1378
Query 1379 GGGGCAGAGCAGGAATGTTAGATGACGCATACCGTTTGATCTGCGATATGCCCATGAGGC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGGGCAGAGCAGGAATGTTAGATGACGCATACCGTTTGATCTGCGATATGCCCATGAGGC 1438
Query 1439 CAAACGCGATAGTCTGGGGAGCGTTACTGAGCGGATGCAGACTGGTCAAAGATACGCAGT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CAAACGCGATAGTCTGGGGAGCGTTACTGAGCGGATGCAGACTGGTCAAAGATACGCAGT 1498
Query 1499 TAGCAGAAACTGTTCTCAAAGAACTCATCGCTTTGGAGCCATGGAATGCAGGAAACTATG 1558
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1499 TAGCTGAAACTGTTCTCAAAGAGCTCATCGCTTTGGAGCCATGGAATGCAGGAAACTATG 1558
Query 1559 TTCAGTTATCCAACATATACTCTGTCAGTGGCAGATGGGATGAAGCGGCTGAAGTGAGGG 1618
|||| |||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||
Sbjct 1559 TTCAATTATCCAACATATACTCTGTTGGTGGCAGATGGGACGAAGCTGCTGAAGTAAGGG 1618
Query 1619 ACATGATGAACAAGAAAGGTATGAAGAAGATCCCGGGATATAGTTGGATCGAGTTGGAAG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACATGATGAACAAGAAAGGTATGAAGAAGATCCCGGGATATAGTTGGATCGAGTTGGAAG 1678
Query 1679 GGACGGTCCATGAGTTTCTAGCAGATGATAAATCGCATCCTCTTAGCGACAAGATATATG 1738
||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1679 GGAAGGTCCATGAGTTTCTAGCAGATGATAAATCTCATCCTCTAAGCGACAAGATATATG 1738
Query 1739 CAAAGCTAGAAGATTTGGGTAATGAAATGAGGCTTATGGGGTTTGTTCCAACGACAGAGT 1798
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1739 CAAAGCTAGAAGATTTGGGTAATGAAATGAGGCTTATGGGTTTTGTTCCAACGACAGAAT 1798
Query 1799 TTGTTTTCTTCGATGTTGAAGATGAAGAAAAAGAAAGGGTCTTGGGGCATCACAGCGAGA 1858
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1799 TTGTTTTCTTCGATGTTGAAGAGGAAGAAAAAGAAAGGGTCTTGGGGTATCACAGCGAGA 1858
Query 1859 AGCTTGCGGTTGCGTTTGGGCTGATCAGTACGGATCATGGCCAAGTGATTCGGGTGGTGA 1918
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGCTTGCGGTTGCGTTAGGGCTGATCAGTACGGATCATGGCCAAGTGATTCGGGTGGTGA 1918
Query 1919 AGAATCTAAGGGTATGTGGAGATTGTCATGAAGTGATGAAGTTGATATCGAAGATCACAA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AGAATCTAAGGGTATGTGGAGATTGTCATGAAGTGATGAAGTTGATATCGAAGATCACAA 1978
Query 1979 GACGAGAGATCGTTGTTAGAGACAACAATAGGTTTCATTGTTTTACAAACGGCTCTTGTT 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 GACGAGAGATCGTTGTTAGAGACAACAATAGGTTTCATTGTTTTACAAACGGCTCTTGTT 2038
Query 2039 CTTGCAATGACTACTGGTGAGCTC 2062
||||||||||||||||||||||||
Sbjct 2039 CTTGCAATGACTACTGGTGAGCTC 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102208309620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5