BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478185
Length=2832
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08840.2 | Symbols: | D-alanine--D-alanine ligase family | ... 4403 0.0
> AT3G08840.2 | Symbols: | D-alanine--D-alanine ligase family
| chr3:2679648-2686187 REVERSE LENGTH=2844
Length=2844
Score = 4403 bits (2384), Expect = 0.0
Identities = 2689/2833 (95%), Gaps = 34/2833 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCCATGGCGACCGGTGTCAGTTTTTCGATGACTAGCGGAATAGGAGGAGGAAGA 60
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||
Sbjct 31 ATGGCGTCCATGGCGACCGGCGTCAGTTTTTCGATGACTAGCGGCATAGGAGAAGGAGGA 90
Query 61 GACGATGTTGAACGAGTAGCGACGGCCGTACGGACGACGCTGAAGCTGAATCAGAAGAAC 120
|||||||| | |||||||||||||| | |||||| || |||||||||||||||||||||
Sbjct 91 TACGATGTTCATCGAGTAGCGACGGCTGCACGGACAACTCTGAAGCTGAATCAGAAGAAC 150
Query 121 TCACTGAGCGAGAGTACATGCA-GTTTTTCGGTGATGAACAGGTATCGGGGATCCGGAGG 179
|||||||||||||||||||||| | |||| || |||||| | ||||||||||||| ||
Sbjct 151 TCACTGAGCGAGAGTACATGCATGCTTTT-GGGGATGAATAAGTATCGGGGATCC---GG 206
Query 180 AGCTATACGAACCGTATCGAAGGCCGT-AGTTGACGGAGATGGGATGAGTAAGAATCTGA 238
||||||||||||||| |||||||| || ||| ||||| | | ||||||||||| |||||
Sbjct 207 AGCTATACGAACCGTCTCGAAGGCTGTCGGTT-ACGGACAAGAGATGAGTAAGAGTCTGA 265
Query 239 GAGTGGGACTCATTTGCGGAGGTCCGTCGGCGGAGCGCGGGATTTCTCTCAATTCTGCTA 298
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 266 GGGTGGGACTCATTTGCGGAGGTCCGTCGGCGGAGCGCGGGATTTCTCTCAACTCTGCTA 325
Query 299 GATCAGTTCTCGATCATATTCAGGGTGATGGTATAAGCGTGAGCTGCTATTATATAGATC 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 326 GATCAGTTCTCGATCATATTCAGGGTGATGGTATAAACGTGAGCTGCTATTATATAGATC 385
Query 359 CTGATCTCAAAGCCTTTGCAATTTCCTCCGCTCAGGTGTACTCGAATACTCCTTCAGATT 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 386 CTGATCTCAAAGCCTTTGCAATTTCATCCGCTCAGGTGTACTCGAATACTCCTTCAGATT 445
Query 419 TCGATTTCAAGCTGGAGAGTCTTGCACAGGGATTCTCTTCATTATCCAAATTTGCCGAGC 478
||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 446 TCGATTTTAAGCTGGAGAGTCTTGCACAGGGATTCTCGTCATTATCCGAATTGGCCGAGC 505
Query 479 ATCTTGTTTCTGCCGTGGACATTGTTTTTCCAGTAATTCATGGTCGATTTGGTGAAGATG 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 ATCTTGTTTCTGCTGTGGACATTGTTTTTCCAGTAATTCATGGTCGATTTGGTGAAGATG 565
Query 539 GAGGCATTCAGGAGCTGTTGGAAAGTCACAACATTCCATTTGTGGGGACTGGATCCCGTG 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GGGGCATTCAGGAGCTGTTGGAAAGTCACAACATTCCATTTGTGGGGACTGGATCCCGTG 625
Query 599 AATGTATTCGAGCATTTGACAAGTATGAAGCCTCTTTGGAGCTCAAGGAACTTGGTTTCA 658
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 AATGTTTTCGAGCATTTGACAAGTATGAAGCCTCTTTGGAGCTCAAGGAACTTGGTTTCA 685
Query 659 TGACAGTACCTAACTACTTGGTGCAGGGAACTGGAGTAGACAAAAGTGAAATAGCACAGT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 686 TGACAGTACCAAACTACTTGGTGCAGGGAACTGGAGTAGACAAAAGTGAAATAGCACTGT 745
Query 719 GGTTTACAGATAACCAGCTGGATCTCGAGATGGGAAAAGTCGTGGTAAAACCAGCCAAAG 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 746 GGTTTACAGATAACCAGCTGGATCTCGAGATGGGAAAAGTTGTGGTAAAACCAGCTAAAG 805
Query 779 CAGGTTCAAGCATTGGTGTCAAGGTTGCTTTTGGCGTAAATGATTTAATTAAAAAGGCTA 838
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 806 CAGGTTCAAGCATTGGTGTCAAGGTTGCTTTTGGCGTAAATGATTCAATTAAAAAGGCTA 865
Query 839 TTGAACTTATTCTAGAGGGAATTGATGATAGAGTTGTTGTGGAGGTGTTTATTGAAGATG 898
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 866 CTGAACTTATTCTAGAGGGAATTGATGATAGAGTTGTTGTTGAGGTGTTTATTGAAGATG 925
Query 899 CATATGAGTTCACTGCCATCGTCCTGGATGTGGGTTCTGGTTCTGGTTGCCATCCTGTTG 958
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 926 CATATGAGTTCACTGCCATCGTCCTGGATGTGGGTTCTGGTTCTGTTTGCCATCCTGTTG 985
Query 959 TTTTGATGCCTACTGAGGTGCAACTTCAGTTTCATGGCAGTGGTGATCTACAA-GAAAAT 1017
||||||||||||||||||||||||||||||||||||||| |||||||| | || |||||
Sbjct 986 TTTTGATGCCTACTGAGGTGCAACTTCAGTTTCATGGCATTGGTGATCCA-AAGGAAAAC 1044
Query 1018 GCAATCTTCGACTATCGGAGGAAGTATTTGCCGACACAGCAGGTCACCTATCACACTCCT 1077
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1045 GCAATCTTCGACTATCGGAGGAAGTATCTGCCGACACAGCAGGTCACCTATCACACTCCT 1104
Query 1078 CCCCGTTTCCCTATCCATGTTATCAAAAGTATCCGTGAAGAGGCATCTCTTATATTTCAA 1137
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1105 CCACGTTTCCCTATCCATGTTATCAAAAGTATTCGTGAAGAGGCATCTCTTATATTTCAA 1164
Query 1138 AAGCTTGGTCTACGTGACTTTGCTCGCATTGATGGATGGTATTTGGCTCCCAATTCAAAT 1197
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAGCTTGGTTTACGTGACTTTGCTCGCATTGATGGATGGTATTTGGCTCCCAATTCAAAT 1224
Query 1198 TTATCAT---CTGCAAGTGAAACGCTTGGAGGACCCGAGTCAGGGGATATTATATTCACT 1254
||||||| ||| ||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1225 TTATCATCACCTGTAAGTGAAACGCTTGGAGGAACCAAGTCAGGAGATATTATATTCACA 1284
Query 1255 GACATCAACCTGATAAGTGGCATGGAGCAAACCAGCTTTCTCTTCCAGCAGGCTTCTAAG 1314
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1285 GACATCAACCTGATAAGTGGCATGGAGCAAACTAGCTTTCTCTTCCAGCAGGCATCTAAG 1344
Query 1315 GTTGGATTTTCTCATTCAAACATTCTGCGAACAATCATCCACCGTGCTTGCTCGAGGTTT 1374
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1345 GTTGGATTTTCTCATTCAAACATTCTGCGAACAATCGTCCACCGTGCTTGCTCGAGGTTT 1404
Query 1375 CCCCATCTT-ACTTGGTATAATTATGGGTATAGTCAATTACTCCAAGGTTCAACAACCCT 1433
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 CCCCATCTTGA-TTGGTATAATTATGGGTATAGTCAATTACTCCAAGGTTCAACAACCCT 1463
Query 1434 GGAAGTCTCTGGGGACGTCCAGAAAGTGTTTGTCATATTTGGAGGAGATACTTCAGAGCG 1493
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 GGAAGTCTCTGAGGACCCCCAGAAAGTGTTTGTCATATTTGGAGGAGATACTTCAGAGCG 1523
Query 1494 GCAGGTGTCTGTAATGAGTGGAACAAATGTCTGGATCAATTTGCAAAGATTTGTAGATCT 1553
||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1524 GCAGGTGTCCGTCATGAGTGGAACAAATGTCTGGGTCAATTTGCAAAGATATGTAGATCT 1583
Query 1554 CAATGTAACTCCCTGTTTGCTTTCCCCCTCACTTGGAAACTCATCAGGCGCATCTTTGAA 1613
||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||
Sbjct 1584 TAATGTAACTCCCTGTTTGCTTTCCCCCTCACTTAGCAACTCATTAGGCGCATCTTCGAA 1643
Query 1614 CTTGGACAACAGAGAAGTCTGGGCTTTGCCCTACTCGGTTGTGCTAAGGCACACTGCTGA 1673
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1644 CTTGGACAATAGAGAAGTCTGGGTTTTGCCCTACTCGGTTGTGCTAAGGCACACTGCTGA 1703
Query 1674 GGAAGTTCTTGCAGCGTGCTTAGAAGCAGTCGAGCCTGATCGGGCTTTGTTTACATCTCT 1733
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 1704 GGAAGTTCTTGCAGCGTGCTTAGAAGCAGTCGAGCCTGTTAGGGCTTTATTTACATCTCT 1763
Query 1734 CCTGCAGAAGCAAGTGATGGAGGATCTTATGGATGGTTTGAAGAATCAAAGCTGGTTTAC 1793
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1764 GCTGCAGAAGCAAGTGATGGAGGATCTTATGGATGGTTTTAAGAATCAAAGCTGGTTTGC 1823
Query 1794 AGGGTTTGATATCACAGACGAACTGCCTAGAAATTTCTCGTTGAAAGAGTGGATCAAGCA 1853
|||||||||||| |||||||| ||||| ||||| | ||| ||||||||||||||||||||
Sbjct 1824 AGGGTTTGATATAACAGACGAGCTGCCCAGAAAGTACTCATTGAAAGAGTGGATCAAGCA 1883
Query 1854 TGCCAAGGAAGCTCAAGCAACTGTCTTCATTGCAGGCTATCGCTATATCTTTATGCATGG 1913
||||||||||||||||||||||||||||||||||| | || || | |
Sbjct 1884 TGCCAAGGAAGCTCAAGCAACTGTCTTCATTGCAG--T---GC-AT--------G---G- 1925
Query 1914 AGGAATTGGGGAAGATGGTACACTGCAGGTCTTGCTGGAGGATGAAGGAGTTTCTTATAC 1973
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1926 AGGAATTGGTGAAGATGGTACACTGCAGGGCTTGCTGGAGGATGAAGGAGTTTCTTATAC 1985
Query 1974 AGGTCCAGGCGTATTAGCTTCAAGGACTTGCATGGACAAGGTTATGACATCTCAGGCTCT 2033
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1986 AGGTCCAGGCGTACTAGCTTCAAGGACTTGTATGGACAAGGTTATGACATCTCAGGCTCT 2045
Query 2034 TAGTCATCTTTCAGAGTTTGGAATTCATACCATAAGCAAAGATGTGAAGAGAACAGAGGA 2093
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 TAGTAATCTTTCAGAGTTTGGAATTCATACCATAAGCAAAGATGTGAAGAGAACAGAGGA 2105
Query 2094 TATAATGCATGAGACCATCCCAAATGTTTGGGATGAATTGATCAATAAGTTTCAGTGTCT 2153
|||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 2106 TATAATGCATGAGACCTTCCCAAATGTTTGGGATGAATTAATCAAGAAGCTTCAGTGTCT 2165
Query 2154 CACACTATGTGTTAAACCAGCAAAGGATGGATGTTCCACTGGCGTTGCAAGATTATGTTC 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 CACACTATGTGTTAAACCAGCAAAGGATGGATGTTCCACTGGCGTTGCAAGATTATGTTC 2225
Query 2214 CTCTGAAGACCTTGCTGTATATGTACAAGCTTTGAAAGATTGTCTACTAAGGATTCCTCC 2273
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 2226 CTCTGAAGACCTTGCTGTATATGTACAAGCTTTGAAAGATTGTATACCAAGAATTCCTCC 2285
Query 2274 AAATACTCTTTCCAAGACACATGGAACGATTGAGATGCCAAATCCTACTCCAGAGTTCTT 2333
||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2286 AAACACTCTTTCTAAGACACATGGAATGATTGAGATGCCAAATCCTACTCCAGAATTCTT 2345
Query 2334 GATTTTTGAACCATTTGTTGAAACCGATGAAATCATAGTTTCATCCAAAGCCAAGCAGCA 2393
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 GATTTTTGAACCATTTGTCGAAACCGATGAAATCATAGTTTCATCCAAAGCCAAGCAGCA 2405
Query 2394 GCTCTCTTGGAAAGGTAGGAGGCGGTGGGTAGAAATGACTGTGGGTGTAATCGGAAAGCG 2453
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2406 GCTCTCTTGGAAAGGTAGGAGGCGGTGGGTAGAGATGACTGTGGGTGTAATTGGAAAGCG 2465
Query 2454 TGGGTCAATGCATTCGCTGAGTCCTAGTCTTACTGTCAAGGAAAGTGGGGATATATTGTC 2513
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2466 TGGGTCAATGCATTCACTGAGTCCTAGTCTTACTGTCAAGGAAAGTGGGGATATATTGTC 2525
Query 2514 TCTCGAGGAGAAGTTCCAAGGCGGCACTGGCATAAATCTTACTCCACCTCCACCAACAAT 2573
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2526 TCTCGAGGAAAAGTTCCAAGGAGGCACTGGCATAAATCTTACTCCACCTCCACCAACAAT 2585
Query 2574 CATGAGTAAGGAAGCTTTGGAGAGATGCAAACATGGTATTGAGCTGATTGCAGAAACTCT 2633
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2586 CATGAGTAAGGAAGCTTTGGAGAGATGCAAACAAGGCATTGAGCTGATTGCAGAAACTCT 2645
Query 2634 CGGGCT-AGAAGGGTTTTCACGGATCGATGCTTTTGTGCACGTTGAAACTGGAGAGGTGC 2692
||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2646 CGG-CTTAGAAGGGTTTTCACGGATCGATGCTTTTGTGCATGTTGAAACCGGAGAGGTGC 2704
Query 2693 TGGTTATAGAGGTAAACACAGTTCCTGGAATGACTCCTTCCACTGTTTTAATCCAACAGG 2752
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2705 TGGTTATAGAGGTAAACACAGTTCCCGGAATGACTCCTTCCACTGTTTTAATCCAACAGG 2764
Query 2753 CATTAGCAGAGCAGCCGCCAATGTACCCTCCTCAATTCTTTCGCACTCTGCTCCATCTTG 2812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2765 CATTAGCAGAGCAGCCGCCAATGTACCCTCCTCAATTCTTTCGCACTCTGCTCCATCTTG 2824
Query 2813 CTACACAGAGAGT 2825
|||| ||||||||
Sbjct 2825 CTACGCAGAGAGT 2837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140718275115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5