BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478191 Length=868 Score E Sequences producing significant alignments: (Bits) Value AT3G08880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 586 1e-166 > AT3G08880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr3:2702973-2704365 FORWARD LENGTH=1002 Length=1002 Score = 586 bits (317), Expect = 1e-166 Identities = 443/498 (89%), Gaps = 32/498 (6%) Strand=Plus/Plus Query 399 ATTGTAAGAAGAAACTCGATGTTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATGTTG 458 ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||| Sbjct 375 ATTGTAAGACGAAACTCTATGCTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATATTG 434 Query 459 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGAC---GA-A--G-A---GA-- 506 ||||||||||||||||||||||||||||||||||||||||| || | | | || Sbjct 435 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGACGAAGAGATGGAACGGGAGT 494 Query 507 T---G----GAG-CG-G----GA-TAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 552 | | || || | || |||||||||||||||||||||||||||||||||||| Sbjct 495 TCAAGCTAAAAGACGAGCTTAGACTAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 554 Query 553 TGAT-ATCGATTGATGAACATAAGCAATCTACAAAGAGAAAAGAGCGGGACGGCTTGAGA 611 || | |||||| ||||||||||||||||||||||||||||||| | |||||| ||||||| Sbjct 555 TG-TCATCGATAGATGAACATAAGCAATCTACAAAGAGAAAAGTGAGGGACGACTTGAGA 613 Query 612 GCTGAGAAAAAGCTGTCTATGTATGCTTCTGTCACGAAAGTTATACCGGACATTGATGGT 671 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| | Sbjct 614 GCTGAGAAAAAGCTATCAATGTATGCTTCTGTCACGAACGTTATACCGGACATTGATGAT 673 Query 672 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGGTAATTGAAAAGTTTCAA 731 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 674 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGCTAATTGAGAAGTTTCAA 733 Query 732 TTCGAGACGAATAAGATGACAGCCTACGAGACATGTAACAGTATCTGGAGCATCATAAAC 791 |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 734 TTCGAGACAAATAAGATGACGGCATACGAGACATGTAACAGTATCTGGAGCATCATAAAC 793 Query 792 AAACAATAGAC-TGATTTGGCATCAGTTCATTTGTATGATATATCTGTGTGATCAGTCTT 850 |||||||| || | | |||||| || |||||||||||||||||| |||||| ||||||| Sbjct 794 AAACAATAAACAT-ACTTGGCACCACTTCATTTGTATGATATAT--GTGTGAGCAGTCTT 850 Query 851 GGTTTTAGCTTAGCAACC 868 |||||||||||||||||| Sbjct 851 GGTTTTAGCTTAGCAACC 868 Score = 351 bits (190), Expect = 5e-96 Identities = 263/296 (89%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 61 TGGTATCAGAAATCTACGACTCTCCTTGGTGAGGGTTTTGAGGTGTGGATAATCTGGAGC 120 ||||||||||||||||||| | | | ||||||||||||||| | || | |||||| Sbjct 98 TGGTATCAGAAATCTACGATTTTTC-TGGTGAGGGTTTTGA-G-GT-G------TGGAGC 147 Query 121 TAGGGCTTTTACTGCTAGATAGTGGATTTATCAATTTTCCGCATCAGACAGAAATGGGAA 180 |||||||||| |||||||||||| ||||| ||||||||||| ||| |||||||||||| Sbjct 148 TAGGGCTTTTGCTGCTAGATAGTTGATTTTTCAATTTTCCG---CAG-CAGAAATGGGAA 203 Query 181 ATGCGTCGGAGAATTTCGATATCGAAGATCTCATGTCTTATGGAGACGATTTGATCAATT 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 204 ATGCGTCGGAGAATTTCGATATTGAAGATCTCATGTCTTATGGAGACGATTTGATCAACT 263 Query 241 TATTGGATGTTAAGAATGGGTTTGATGTGATATCTCAAAGTTTTGAGCAGTTTAAAGCTC 300 ||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| ||||||| Sbjct 264 TATTGAATGTTAAGAATGGTTTTGATATTATATCTCAAAGTTCTGAGCAGTTCAAAGCTC 323 Query 301 TCAATTTCGCTTGCGACGGGGATTTCAATCAGATACAATGCTCTATTGAAGATTGT 356 ||||||| |||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 324 TCAATTTTGCTTGCCATGAGGATTTCAATCAGATACAAGGCTCTATTGAAGATTGT 379 Score = 89.8 bits (48), Expect = 4e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 1 AAAGAAATCAAAAATCAAAATTCAGATCTTTCCTCTTCATATCTCCCTCCT 51 ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12 AAAAAAATCAAAAATCAAAATTCAGATCTTTCCTCTTCATATCTCCCTCCT 62 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42347385921 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5