BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478191
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 586 1e-166
> AT3G08880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G01570.1);
Has 177 Blast hits to 175 proteins in 60 species: Archae -
4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses
- 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr3:2702973-2704365
FORWARD LENGTH=1002
Length=1002
Score = 586 bits (317), Expect = 1e-166
Identities = 443/498 (89%), Gaps = 32/498 (6%)
Strand=Plus/Plus
Query 399 ATTGTAAGAAGAAACTCGATGTTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATGTTG 458
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 375 ATTGTAAGACGAAACTCTATGCTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATATTG 434
Query 459 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGAC---GA-A--G-A---GA-- 506
||||||||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 435 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGACGAAGAGATGGAACGGGAGT 494
Query 507 T---G----GAG-CG-G----GA-TAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 552
| | || || | || ||||||||||||||||||||||||||||||||||||
Sbjct 495 TCAAGCTAAAAGACGAGCTTAGACTAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 554
Query 553 TGAT-ATCGATTGATGAACATAAGCAATCTACAAAGAGAAAAGAGCGGGACGGCTTGAGA 611
|| | |||||| ||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 555 TG-TCATCGATAGATGAACATAAGCAATCTACAAAGAGAAAAGTGAGGGACGACTTGAGA 613
Query 612 GCTGAGAAAAAGCTGTCTATGTATGCTTCTGTCACGAAAGTTATACCGGACATTGATGGT 671
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 614 GCTGAGAAAAAGCTATCAATGTATGCTTCTGTCACGAACGTTATACCGGACATTGATGAT 673
Query 672 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGGTAATTGAAAAGTTTCAA 731
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 674 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGCTAATTGAGAAGTTTCAA 733
Query 732 TTCGAGACGAATAAGATGACAGCCTACGAGACATGTAACAGTATCTGGAGCATCATAAAC 791
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 734 TTCGAGACAAATAAGATGACGGCATACGAGACATGTAACAGTATCTGGAGCATCATAAAC 793
Query 792 AAACAATAGAC-TGATTTGGCATCAGTTCATTTGTATGATATATCTGTGTGATCAGTCTT 850
|||||||| || | | |||||| || |||||||||||||||||| |||||| |||||||
Sbjct 794 AAACAATAAACAT-ACTTGGCACCACTTCATTTGTATGATATAT--GTGTGAGCAGTCTT 850
Query 851 GGTTTTAGCTTAGCAACC 868
||||||||||||||||||
Sbjct 851 GGTTTTAGCTTAGCAACC 868
Score = 351 bits (190), Expect = 5e-96
Identities = 263/296 (89%), Gaps = 14/296 (5%)
Strand=Plus/Plus
Query 61 TGGTATCAGAAATCTACGACTCTCCTTGGTGAGGGTTTTGAGGTGTGGATAATCTGGAGC 120
||||||||||||||||||| | | | ||||||||||||||| | || | ||||||
Sbjct 98 TGGTATCAGAAATCTACGATTTTTC-TGGTGAGGGTTTTGA-G-GT-G------TGGAGC 147
Query 121 TAGGGCTTTTACTGCTAGATAGTGGATTTATCAATTTTCCGCATCAGACAGAAATGGGAA 180
|||||||||| |||||||||||| ||||| ||||||||||| ||| ||||||||||||
Sbjct 148 TAGGGCTTTTGCTGCTAGATAGTTGATTTTTCAATTTTCCG---CAG-CAGAAATGGGAA 203
Query 181 ATGCGTCGGAGAATTTCGATATCGAAGATCTCATGTCTTATGGAGACGATTTGATCAATT 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 204 ATGCGTCGGAGAATTTCGATATTGAAGATCTCATGTCTTATGGAGACGATTTGATCAACT 263
Query 241 TATTGGATGTTAAGAATGGGTTTGATGTGATATCTCAAAGTTTTGAGCAGTTTAAAGCTC 300
||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||
Sbjct 264 TATTGAATGTTAAGAATGGTTTTGATATTATATCTCAAAGTTCTGAGCAGTTCAAAGCTC 323
Query 301 TCAATTTCGCTTGCGACGGGGATTTCAATCAGATACAATGCTCTATTGAAGATTGT 356
||||||| |||||| | | ||||||||||||||||||| |||||||||||||||||
Sbjct 324 TCAATTTTGCTTGCCATGAGGATTTCAATCAGATACAAGGCTCTATTGAAGATTGT 379
Score = 89.8 bits (48), Expect = 4e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1 AAAGAAATCAAAAATCAAAATTCAGATCTTTCCTCTTCATATCTCCCTCCT 51
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 AAAAAAATCAAAAATCAAAATTCAGATCTTTCCTCTTCATATCTCCCTCCT 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5