BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478195
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08920.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1227 0.0
> AT3G08920.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr3:2712236-2713269 FORWARD LENGTH=835
Length=835
Score = 1227 bits (664), Expect = 0.0
Identities = 781/835 (94%), Gaps = 17/835 (2%)
Strand=Plus/Plus
Query 1 ATTGGTTAAATTCCTCAGAAAATCCAAAAGAATTAGAGATGACACTTCTTCTTCCTCAAC 60
|||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1 ATTGGTTAAATTCCTCTGAAAATCCAAAAGAATTAAAGATGACAGTTCTTCTTCCTCAGC 60
Query 61 CAAACCATATCCACAAGCCACCAGTAGTACTATACCGACGCCTCCGAAAACCATACAGAT 120
||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||
Sbjct 61 TAAACCATATCCACAAGCTACCAGTAGTACTAAACCGACGCCTCCGACAATCATACAGAT 120
Query 121 TACCAGTGATCTCCGCCGTGTCCGGTAAGGAACTGATACTTTCCGGCAAGGTCCGGGCGG 180
||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||
Sbjct 121 TACCAGTGATCTCCGCCGTTTCCGGTAAAGAGCTGATACTTTCCGGCAAGGTACGGGCGG 180
Query 181 TGGAGCCGAAAGAAGCCAA-GACGGTTGTGGCGTCGGAGGGATACGTGCTCTTAGACGTG 239
||||||| ||||||||||| | |||||||||||||||||||||| | || |||||||||
Sbjct 181 TGGAGCCCAAAGAAGCCAATG-CGGTTGTGGCGTCGGAGGGATATATACTGTTAGACGTG 239
Query 240 AGGCCGGCTTGGGAAAGAGAAAAGGCACGTGTGAAAGGGTCCTTACACGTGCCACTGTTC 299
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 240 AGGCCGGCTTGGGAAAGAGAAAAGGCACGCGTGAAAGGTTCCTTACACGTGCCACTGTTC 299
Query 300 GTGGAGGATACAGACAATGGGCCGATTACGTTGCTGAAGAAATGGATTCATTTGGGATAC 359
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GTGGAAGATCCAGACAATGGGCCGATCACGTTGCTGAAGAAATGGATTCATTTGGGATAT 359
Query 360 ATTGGGCTTTGGACGGGCCAGAGATTCACCATGTTCAATGACGAATTCACCCTCCGTGTT 419
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 360 ATTGGGCTTTGGACGGGCCAGAGATTCACCATGATCAATGACGAATTCGCCCTCCGTGTT 419
Query 420 GTGGAGGCTGTCCCGGACAAAGAGAGTAAAGTGCTCGTCGTGTGCGGTGAAGGACTCAGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGGAGGCTGTCCCGGACAAAGAGAGTAAAGTGCTCGTCGTGTGCGGTGAAGGACTCAGG 479
Query 480 TCGTTGGCGGCTGTATCAAAACTCCACGGAGAAGGGTACAAAAGCTTAGGGTGGTTAGCC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TCGTTGGCGGCTGTATCAAAGCTCCACGGAGAAGGGTACAAAAGCTTAGGGTGGTTAACC 539
Query 540 GGAGGGTTTAACCGAGTAACCGAGGAAGATTTTCCAGAGATCGAAGGGACCGAAGAGCTT 599
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGGGTTTAACCGAGTATCCGAGGGAGATTTTCCAGAGATCGAAGGGACCGAAGAGCTT 599
Query 600 CGGTTCGCCACGATAGGAGGTGTATCATTTTATTTACTCAAACTACTTGTACTGTTACCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGTTCGCCACGATAGGAGGTGTATCATTTTATTTACTCAAACTACTTGTACTGTTACCG 659
Query 660 TCTTTTGGCCAGAAGAGTCGTTAAATTGGTTTTTTA-AGCCAAGTGTGGAGATTCttttt 718
||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||
Sbjct 660 TCTTTTGGCCAGAAGAGTCGTTAAATTGGTTTTTTGGAGCCAAGTGTGAAGA--CATTTT 717
Query 719 ttGTTCTTAAAATTGTGTCCGGTTT-C----T-GGTT--TA-TT-ATTA-TTACAGATGT 767
||||| ||||||||||||||||||| | | ||| | || |||| ||||||||||
Sbjct 718 TTGTTTTTAAAATTGTGTCCGGTTTACACAATTGGTCACTGGTTTATTACTTACAGATGT 777
Query 768 CTTTCATTAGTTGAAATATTT-GTCCGAATCATATGCTTCGGACAGCTAATCTCC 821
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 778 CTTTCATTAGTTGAAATATTTTGTCCGAATCATTTGCTTCGGACAGCTAATCTCC 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5