BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478196
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08930.1 | Symbols: | LMBR1-like membrane protein | chr3:27... 3053 0.0
AT5G01460.1 | Symbols: | LMBR1-like membrane protein | chr5:18... 1947 0.0
> AT3G08930.1 | Symbols: | LMBR1-like membrane protein | chr3:2713398-2717318
FORWARD LENGTH=1954
Length=1954
Score = 3053 bits (1653), Expect = 0.0
Identities = 1754/1804 (97%), Gaps = 2/1804 (0%)
Strand=Plus/Plus
Query 43 AAATCTCTCGAATTGGGGACCTTGTACATTGCGCACGATGGGCGATTTCAACCTCGCTCT 102
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 128 AAATCTCTCGAATTGGGGACGTTGTACATTGCACACGATGGGCGATTTCAACCTCGCTCT 187
Query 103 CGTGATTGTCGCGATCGTTGTTTGCGTCATCGTTTTCATCTCTAGCATCTATCTCCTCGT 162
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 188 CGTGATTGTCGCGATCGTTGTTTGCGTCATCGTATTCATCTCTAGCATCTATCTTCTCGT 247
Query 163 CAACTACCAGCATCCAGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTT 222
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CAACTATCAGCATCCAGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTT 307
Query 223 TGGGCTGTCTATTGCTATGATCTCGATTCTCATGTTACCGGCGGATGTGGCCAATCGGCA 282
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 308 TGGCCTTTCTATTGCTATGATCTCGATTCTCATGTTACCGGCTGATGTGGCCAATCGGCA 367
Query 283 TGCTTGTCGACATGCTATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGCTTGTCGACATGCTATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCT 427
Query 343 TTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCATTCGCAAT 402
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 428 TTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAAT 487
Query 403 GTTTTTCTATGAGGGCGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAAT 462
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GTTTTTCTATGAAGGCGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAAT 547
Query 463 TTGGGTGGTAACCACGGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCAT 522
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTGGGTAGTTACCACGGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCAT 607
Query 523 TGGAAAGGTGGACTTCTCTGTCAGGCACTTGGCTTCTGCCACTTCCACTTTCCCTACTTC 582
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 608 TGGAAAGGTGGACTTCTCGGTCAGGCATTTGGCTTCTGCCACATCCACTTTCCCTACTTC 667
Query 583 CTGGCAATTTTCAAATACTCAACCATGCATCGGTAACACCGCTCGCCAGTGCTCAGCATT 642
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 668 CTGGCAGTTTTCAAATACTCAACCATGCATAGGTAACACTGCTCGCCAGTGCTCAGCATT 727
Query 643 TACAGCCAATCCCACATCTGAGAAAACATGGACCATGCGTACTACTTTTCCAGAGTATGT 702
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 728 TACAGCTAATCCCACATCTGAGAAAACATGGACTATGCGTACTACTTTTCCAGAATATGT 787
Query 703 TGTTGCTCTTGCGACAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTAT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGTTGCTCTTGCGACAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTAT 847
Query 763 TGCATGTCTACC-TCTGGGACTTATCACTGCATTCATCAGGCGGCCAAAGGCTGTTATCA 821
|||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 848 TGCATGTCTACCAT-TAGGACTTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCA 906
Query 822 CTAGATCACAATATATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGA 881
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CTCGATCACAATATATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGA 966
Query 882 AAGCAGCTGATGGACTTCATCAGGAAGAGAGAAGTGGTGCTAAGGGCAGGAAGTGGAGGA 941
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 967 AAGCAGCTGATGGACTTCATCAGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGA 1026
Query 942 AAAATGTGAAAGCAGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAG 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AAAATGTGAAAGCAGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAG 1086
Query 1002 AAGAGATGTATCCTCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTTGGAT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1087 AAGAGATGTATCCTCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTCGGAT 1146
Query 1062 ACTTGGCCAAGTTCATTCTTGGAATCTTAGGATTGATCGTTTCCATTGCTTGGGTTGCAC 1121
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 ACTTGGCCAAGTTTATTCTTGGAATCGTAGGATTGATCGTTTCCATTGCTTGGGTTGCAC 1206
Query 1122 ACATCATCATATATCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 ACATCATCATATATCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCA 1266
Query 1182 TTAAGCTTGATGATGTTTGGGGTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TTAAGCTTGATGATGTTTGGGGTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCT 1326
Query 1242 ACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 ACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTA 1386
Query 1302 CCATTCATCCAATGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGGC 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1387 CCATTCATCCAATGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCC 1446
Query 1362 TCATTCTTCTTTGTTCAATCAGTGTGATTCAATTTTGTGCCACTGCATTTGGATATTATG 1421
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1447 TCATTCTTCTTTGTTCAATCAGCGTGATTCAATTTTGTGCCACTGCATTTGGATATTACG 1506
Query 1422 CTCAAGCCACTGCTGCCCAGGAGATATTTGGTCACACATTGCAGTCGCTTAGAGGAATTA 1481
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1507 CTCAAGCCACTGCTGCCCAGGAGATATTTGGCCACACATTGCAGTCCCTTAGAGGAATTA 1566
Query 1482 AGTACCTTTACAAGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGACTT 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AGTACCTTTACAAGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGACTT 1626
Query 1542 TCCTATATTACATTGCCTTTGGATGGAGAAGaaaaaaaCCTAGTGGCCGTTTCCAGCTCT 1601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1627 TCCTATATTACATTGCCTTTGGATGGAGAAGAAAAAAAACTAGTGGCCGTTTCCAGCTCT 1686
Query 1602 CTTCTTAATGTAAAACGTTTTCACGGGGATCTGATTGAGTGCTGTCGACAGAGTTTCTAC 1661
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1687 CTTCTTAATGTAAAACGTTTTCACGGGGATCTGATTGAGTGCTGTCGACAAAGTTTCTAC 1746
Query 1662 TTGTTTTTGGATCATCATCGATTCCAGAAGTATCTAGTGACTCTGCTTCTGAGGTTTGTT 1721
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1747 TTGTTTCTGGATCATCATCGATTCCAGAAGTATCTAGAGACTCTGCTTCTGAGGTTTATT 1806
Query 1722 TTCCTGAATGTATTATTAAATTTTTTGTGAGTGTACTGTTTGGTTGTGCAACACTTAGCT 1781
||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||
Sbjct 1807 TTCCTGAATGTATTATTAAATTTCTTGTGAGTGTGCTGTTTGGTTGCGCAACAGTTAGCT 1866
Query 1782 GTCCGGTGTTGGTCTATTGTACTGTTTCGGATGCGATCATGTAATCATAtttttttAATG 1841
|||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1867 GTCCTGTCTTGGTCTATTGTACTGTCTCGGATGCGATCATGTAATCATATTTTCTTAATG 1926
Query 1842 AGAA 1845
||||
Sbjct 1927 AGAA 1930
> AT5G01460.1 | Symbols: | LMBR1-like membrane protein | chr5:186694-190457
FORWARD LENGTH=2108
Length=2108
Score = 1947 bits (1054), Expect = 0.0
Identities = 1395/1563 (89%), Gaps = 10/1563 (1%)
Strand=Plus/Plus
Query 58 GGGACCTTGTACATTGCGCACGATGGGCGATTTCAACCTCGCTCTCGTGATTGTCGCGAT 117
|||| || ||||||||| | ||||||| |||||||| ||||||||||||||||| |||||
Sbjct 108 GGGATCTCGTACATTGCACGCGATGGGAGATTTCAATCTCGCTCTCGTGATTGTTGCGAT 167
Query 118 CGTTGTTTGCGTCATCGTTTTCATCTCTAGCATCTATCTCCTCGTCAACTACCAGCATCC 177
||| ||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 168 CGTAGTTTGCGTCATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCC 227
Query 178 AGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTTTGGGCTGTCTATTGC 237
|||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||
Sbjct 228 AGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCCATTGC 287
Query 238 TATGATCTCGATTCTCATGTTACCGGCGGATGTGGCCAATCGGCATGCTTGTCGACATGC 297
||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 288 TATGATCTCTATTCTCATGTTACCGGCGGATGTGGCTAACCGGCATGCTTGTCGACATTC 347
Query 298 TATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCTTTGGCTTGCTATTTA 357
|| ||||| || ||||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct 348 GATTTACAACGGCGCTTGTAATCTCACCTTACCTATGAAGGATCTTTGGCTTGCCGTTTA 407
Query 358 TATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCATTCGCAATGTTTTTCTATGAGGG 417
|| || |||||| | || || ||||| ||||||| ||||| |||||||||||||| ||
Sbjct 408 CATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGG 467
Query 418 CGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAATTTGGGTGGTAACCAC 477
||||||||||||| ||||||| ||||||||||| ||||| || ||||||||||| || ||
Sbjct 468 CGACCAGGACAAGGCTCTTGGGAAGAGGATAAAGAGTGCTTTGATTTGGGTGGTTACTAC 527
Query 478 GGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCATTGGAAAGGTGGACTT 537
|||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 528 AGCTGTTGTTTGTGCTCTGGTTCTTGGAATTTTATACGGAGTCATTGGGAAGGTGGACTT 587
Query 538 CTCTGTCAGGCACTTGGCTTCTGCCACTTCCACTTTCCCTACTTCCTGGCAATTTTCAAA 597
|||||| ||||||||| |||||||||| | |||||||||||||| ||||| ||||||||
Sbjct 588 CTCTGTAAGGCACTTGTCTTCTGCCACGACTACTTTCCCTACTTCATGGCAGTTTTCAAA 647
Query 598 TACTCAACCATGCATCGGTAACACCGCTCGCCAGTGCTCAGCATTTACAGCCAATCCCAC 657
|| |||||| ||||| |||||||| ||||| ||||||||||||| |||||| ||| | |
Sbjct 648 TAATCAACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGC 707
Query 658 ATCTGAGAAA-ACATGGACCATGCGTACTACTTTTCCAGAGTATGTTGTTGCTCTTGCGA 716
||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 708 GTCTGA-AAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTA 766
Query 717 CAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTATTGCATGTCTA-CCT 775
|||| ||||||||||| || ||||||||||||||||||||||||||||| || ||| |||
Sbjct 767 CAATCGTTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCT 826
Query 776 CTGGGACTTATCACTGCATTCATCAGGCGGCCAAAGGCTGTTATCACTAGATCACAATAT 835
|||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct 827 -TGGGCCTTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTAT 885
Query 836 ATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGAAAGCAGCTGATGGA 895
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 886 ATAAAGGAAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCA 945
Query 896 CTTCATCAGGAAGAGA-GAAGTGGTGCTAAGGGCAGGAAGTGGAGGAAAAATGTGAAAGC 954
||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 946 CTTCACCAGGAAGA-ACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGC 1004
Query 955 AGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAGAAGAGATGTATCC 1014
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1005 AGTTGAAAAGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCC 1064
Query 1015 TCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTTGGATACTTGGCCAAGTT 1074
||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct 1065 GCAAGGAGAGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTT 1124
Query 1075 CATTCTTGGAATCTTAGGATTGATCGTTTCCATTGCTTGGGTTGCACACATCATCATATA 1134
||||||||||||||||||| || ||||| | |||||| |||| ||||||||||||||
Sbjct 1125 TGTTCTTGGAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATA 1184
Query 1135 TCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCATTAAGCTTGATGA 1194
|||||| || |||||||| ||||| |||||||| || || |||||||| || || |||||
Sbjct 1185 TCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGA 1244
Query 1195 TGTTTGGGGTCTT-TTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTG 1253
|| ||||||||| || ||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1245 CGTCTGGGGTCTTCTT-GGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTG 1303
Query 1254 CTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAA 1313
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1304 CTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAA 1363
Query 1314 TGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGGCTCATTCTTCTTT 1373
||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || |
Sbjct 1364 TGAAATGGGGAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCT 1423
Query 1374 GTTCAATCAGTGTGATTCAATTTTGTGCCACTGCATTTGGATATTATGCTCAAGCCACTG 1433
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1424 GTTCTATCAGTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCG 1483
Query 1434 CTGCCCAGGAGATATTTGGTCACACATTGCAGTCGCTTAGAGGAATTAAGTACCTTTACA 1493
| || |||||||||||||| ||||| |||||||| ||| | || ||||||||||| ||||
Sbjct 1484 CCGCTCAGGAGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACA 1543
Query 1494 AGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGAC-TTTCCTATATTAC 1552
|||||||||||||||| |||||||||||| |||| |||||| |||| ||| ||||||||
Sbjct 1544 AGTACAATGTGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTT-TATATTAC 1602
Query 1553 ATTGCCTTTGGATGGAGAAGaaaaaaaCCTAGTGGCCGTTTCCAGCTCTCTTCTTAATGT 1612
|||||||||||||||||||||||||| || || ||| | |||||||||||| | ||||||
Sbjct 1603 ATTGCCTTTGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGT 1662
Query 1613 AAA 1615
|||
Sbjct 1663 AAA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91314791355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5