BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478203
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC fami... 1840 0.0
> AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC family
protein | chr3:2727215-2729601 FORWARD LENGTH=1387
Length=1387
Score = 1840 bits (996), Expect = 0.0
Identities = 1095/1143 (96%), Gaps = 5/1143 (0%)
Strand=Plus/Plus
Query 1 GAAAGCAGCGAATTTGTGAACTTGAGAGAAAAAGCGGTCGTCAATGGCGTCTGCTCTATG 60
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 28 GAAATCAGCGAATTTGTGAACTTCAGAGAAAAATTGGTCGTCAATGGCGTCTGCTCTATG 87
Query 61 TAGAACTGCAAGCCGTCTTCGTTCCATCCAAATTTGTCGTCGGATTCGCGTCTCGAGCGA 120
||||||||||||||||||||||||| | ||| ||| |||||||||||||||||| |||||
Sbjct 88 TAGAACTGCAAGCCGTCTTCGTTCCGTTCAACTTTTTCGTCGGATTCGCGTCTCCAGCGA 147
Query 121 TCTACTATCGGCATCGTCTCCTTTTCCGGCGTGCATCTCCGACGCGCTTCGTCATGGAGA 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 148 TCTACTATCGGCATCGTCTCCTTCTCCGGCGTGCATCTCCGACGCGCTTCGTCATGGAGA 207
Query 181 TTTCTCTCTTCCTCGATCGtttttttCACTTAACTGTGGAATTGAAATGATGAAGATGGA 240
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 208 TTTCTCTCTTCCTCGATCGTTTTTTTCACTTAACTGTGGAATCGAAATGCTGAAAATGGA 267
Query 241 TCAGAGATGTTTGCTGAGTACTTCTGCTTCTGATACTACCTCGAAACCTGACTCCGGTAA 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 268 TCAGAGATGTTTGCTGAGTACTTCTGCTTCTGATACTACCTCGAAACATGACTCAGGTAA 327
Query 301 ATCGGAAACAAAATCTTCCGATAAAAATGAGAATTCTGGAGGATCAGG-GAGTTCTGATG 359
| |||||||||||||||| || ||||||||||| ||||||||||| || |||||||||||
Sbjct 328 ACCGGAAACAAAATCTTCGGAGAAAAATGAGAAATCTGGAGGATC-GGAGAGTTCTGATG 386
Query 360 GTGGTTCAGATCAGAAAAACGAGCGTGCTTCTGGAAAAGACGTTCGTGGAGGGCCGGTTT 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTGGTTCAGATCATAAAAACGAGCGTGCTTCTGGAAAAGACGTTCGTGGAGGGCCGGTTT 446
Query 420 CATGGATGAGCTTTTTCTTGCTGTTTGCTACTGGAGCTGGATTGGTCTACTATTATGATA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 447 CATGGATGAGCTTTTTCTTGCTGTTTGCTACTGGAGCTGGATTGGTCTACTATTATGACA 506
Query 480 GAGAAAAGAAACGTCATATCGAAGATATAAATAAGAATTCTATAGCCGTCAAGGAGGGAC 539
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 507 CACAAAAGAAACGTCATATCGAAGATATAAATAAGAACTCTATAGCCGTCAAGGAGGGGC 566
Query 540 CATCTGCAGGAAAAGCAGCCATTGGAGGACCATTCAACCTTATAAGAGACGATGGAAAAC 599
||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 567 CATCTGCTGGAAAAGCAGCCATTGGAGGACCATTCAGCCTTATAAGAGACGATGGGAAAC 626
Query 600 GTGTGACGGAGAAAGACTTGATGGGAAAATGGACCATCTTATACTTTGGTTTCACTCATT 659
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 GTGTGACGGAGAAAAACTTGATGGGAAAATGGACCATTTTATACTTTGGTTTCACTCATT 686
Query 660 GTCCCGATATCTGTCCTGACGAGCTTATTAAGTTAGCTGCTGCCATTGACAAAATAAAGG 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 687 GTCCCGATATCTGTCCTGACGAACTTATTAAGTTAGCTGCTGCCATTGACAAAATAAAGG 746
Query 720 AAAATTCGGGAGTAGACGTGGTGCCAGTGTTTATCTCTGTGGATCCTGAAAGAGACACAG 779
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 747 AAAATTCGGGAGTAGACGTGGTGCCAGTGTTTATCTCTGTGGACCCTGAAAGAGACACAG 806
Query 780 TTCAGCAAGTACATGAATATGTCAAAGAATTTCACCCGAAATTGATCGGGTTAACTGGGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TTCAGCAAGTACATGAATATGTCAAAGAATTTCACCCGAAATTGATCGGGTTAACTGGGA 866
Query 840 GCCCTGAAGAAATTAAATCGGTGGCCCGATCTTACCGGGTTTACTACATGAAGACTGAAG 899
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 867 GCCCTGAAGAAATCAAATCGGTGGCCCGATCTTACCGGGTTTACTACATGAAGACCGAAG 926
Query 900 AGGAAGATTCAGACTATCTCGTTGATCACTCTATAGTCATGTACTTGATGAGTCCGGAGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AGGAAGATTCAGACTATCTCGTTGATCACTCTATAGTCATGTACTTGATGAGTCCGGAGA 986
Query 960 TGAATTTTGTGAAATTCTACGGGAAGAATCACGATGTTGACTCGTTGACCGACGGCGTTG 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 987 TGAATTTTGTGAAATTCTACGGGAAGAATCACGATGTTGACTCGTTGACAGACGGCGTTG 1046
Query 1020 TAAAAGAGATCCGACAGTACCGGAAGTAAAGAGCCTTCTTCGAAGTACACTTAGGTGATT 1079
||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1047 TAAAAGAGATCCGTCAGTACCGGAAGTAAAGAACCTTC---GAAGTACACTTAGGTGATT 1103
Query 1080 AATTTACATTATTCCCATTTTTGGAAGGTCACCATTAATAAGAATTTCTCAGTACGCGGA 1139
||| ||||||||||||||||||||||| ||| |||||||||| ||||||||| || ||||
Sbjct 1104 AATATACATTATTCCCATTTTTGGAAGCTCATCATTAATAAGGATTTCTCAGAACACGGA 1163
Query 1140 GCT 1142
|||
Sbjct 1164 GCT 1166
Score = 54.7 bits (29), Expect = 2e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 1143 AAAAAACATCAGTTTTTGTTGTGGCCGAGGCAT 1175
||||||||||||||||||||||||||||| |||
Sbjct 1182 AAAAAACATCAGTTTTTGTTGTGGCCGAG-CAT 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58533835470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5