BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478205
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08970.1 | Symbols: ATERDJ3A, TMS1 | DNAJ heat shock N-termi... 2891 0.0
> AT3G08970.1 | Symbols: ATERDJ3A, TMS1 | DNAJ heat shock N-terminal
domain-containing protein | chr3:2737537-2740530 FORWARD
LENGTH=2036
Length=2036
Score = 2891 bits (1565), Expect = 0.0
Identities = 1822/1943 (94%), Gaps = 29/1943 (1%)
Strand=Plus/Plus
Query 1 AAAAAAGAAGAAGATTAAGAGGTTGTACTTTCGGGATGGTGAGAACAAGATTGGCGATTT 60
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 18 AAAAGAGAAAAAGATTGAGAGGTTGTACTTTCGGGATGGTGAGAACAAGATTGGCGATAT 77
Query 61 CTGTTGTTCTTGTGTCCACATTGTTGTTGTTGAATGTG-GAGTCGAAGAGCGTTGATCCT 119
|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 78 CTGTTGTTCTTGTGTCGACATTGTTGTTGTTGAATGTGAAAG-CGAAGAGCGTTGATCCT 136
Query 120 TATAAGGTTCTTGGAGTATCTCGGGATGCAAAGCAGCGTGAAATTCAGAAAGCTTTTCAC 179
|| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 137 TACAAGGTTCTTGGAGTATCTAAGGATGCAAAGCAGCGTGAAATCCAGAAAGCTTTCCAC 196
Query 180 AAGCTCTCTCTGAAATATCATCCAGATAAAAACAAAAATAAGGGTGCTCAGGAGAAGTTT 239
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 197 AAGCAATCTCTGAAATATCATCCAGATAAAAACAAAGATAAGGGTGCTCAGGAGAAGTTT 256
Query 240 GCTGAGATTAATAATGCTTATGAGATCTTATCTGATGAAGAGAAGAGGAAAAACTATGAT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GCTGAGATTAATAATGCGTATGAGATCTTATCTGATGAAGAGAAGAGGAAAAACTATGAT 316
Query 300 CTTTATGGAGACGAGAAAGGACAGCCAGGATTTGACTCGGGTTTTCCCGGAGGTAATGGT 359
||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 317 CTTTATGGAGATGAGAAAGGACAGCCTGGATTTGATTCGGGGTTTCCCGGAGGTAATGGT 376
Query 360 GGGTATTCATACTCCTCAAATGGTGGACATGGTGGTGGTGGTTTCAATTTTGGAGGGCCA 419
|||||||| |||||||| | | |||||||||||||||| |||||||||||
Sbjct 377 GGGTATTCTTACTCCTC---------A-A--GTGGTGGTGGTTTCAACTTTGGAGGGCCT 424
Query 420 GGTGGATGGCAAAATATggggggtgggggAGGCTCCAAATCGTTTTCTTTCTCGTTTGGC 479
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 425 GGTGGTTGGCAAAATATGGGCGGTGGGGGAGGTTCCAAATCGTTTTCTTTCTCGTTTGGC 484
Query 480 GGTCCTAGTGAAAGCTCCTTTGGTTTTGGGATGGATGATATCTTTTCCATGTTTTCGGGC 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 485 GGTCCTAGTGAAAGCTCCTTTGGTTTTGGTATGGATGATATCTTTTCCATGTTTTCGGGC 544
Query 540 GGTAGTTCTAAAGGAAAGGAGCAGTTTGGTGGCTTTGGTAGCTCATCGAAGGCTGAATCT 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 545 GGTAGTTCTAAAGGAAAGGAGCAGTTTGGTGGCTTTGGTAGCTCATCGAATGCTGAATCT 604
Query 600 AAATCAAAGAGCAGTACGGTAGCAACTATCAGAACCATAAATTCTCAGGTCTATAAGAAG 659
||||||||||||||||| |||||| |||||| |||||| || ||||||||||||||||||
Sbjct 605 AAATCAAAGAGCAGTACTGTAGCAGCTATCAAAACCATTAACTCTCAGGTCTATAAGAAG 664
Query 660 GAAATTATGGACCAAGGGATGACTTGGCTTGTGTTGTCGTATCTTCCATCTCAAAGGGGA 719
|| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 665 GACGTTGTGGACCAAGGGATGACTTGGCTTTTGTTGTCGTATCTTCCATCTCAGAGGGGA 724
Query 720 A-CTCAGTACCATGAATCGATCATAGAGGAAGTTGCTGAGTCGTTGCAAGGAGCTTTAAA 778
| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AGC-CAGTACCATGAATCCATCATAGAGGAAGTTGCTGAGTCGTTGCAAGGAGCTTTAAA 783
Query 779 GGTTGGGCGTA-TAAATTGTGAAACAGAATCCTCTCTTTGCAAACAACTAGGCATAGTTC 837
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGTTGGGCG-ATTAAATTGTGAAACAGAATCCTCTCTTTGCAAACAACTAGGCATAGTTC 842
Query 838 CTCGTAGGGCTCCAAGGTTGTTTGTTTATTCATACACATCAAGTGGCAAAGCTACCTTAG 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CTCGTAGGGCTCCAAGGATGTTTGTTTATTCATACACATCAAGTGGCAAAGCTACCTTAG 902
Query 898 CAGAATATACTGAAGAGCTTGTTGCAAAGAAGGTGAAAAGTTTCTGCCAGGAACATCTAC 957
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 903 CAGAATATACTGAAGAGCTTGTTGCAAAGAAGGTGAAAAGCTTCTGCCAGGAACATCTAC 962
Query 958 CGAGATTCTC-AAAAAGAATTGATCTGAATACATTCGATGTTTCTGCTGTTAGCTCACAA 1016
|||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 963 CGAGATTCTCAAAAAAG-ATTGATCTGAATACATTCGATGTATCTGCCGTTAGCTCACAA 1021
Query 1017 AGGACTCCTAAAGTTATGCTTCTGTCAACAAAGAAAGACACTCCTGTTATCTGGCGTGTT 1076
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1022 AAGACTCCTAAAGTTTTGCTTCTGTCAACAAAGAAAGACACTCCTGTCATCTGGCGGGTT 1081
Query 1077 CTGAGTGGCTTGTACAATGGACGCTTTGTCTTTTACAATACAGAGGTCCATGATACTTCT 1136
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1082 CTAAGTGGCTTGTACAATGGACGATTTGTCTTTTACAACACAGAGGTCCATGATACTTCT 1141
Query 1137 GATCCAAAGATACAAAAGTTGGGGGTTGACGCGTTTCCGGCAATAGTTGGCTGGTTATCG 1196
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 1142 GATCCAAAGATACAAAAGTTGGGGGTAGACAAGTTTCCGGCAATAGTTGGTTGGTTATCG 1201
Query 1197 AATGGGGAGAAGCAAGTCTTGAAAACAGGTATCACTGTGAAAAATCTGAAATCAGCTGTC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AATGGGGAGAAGCAAGTCTTGAAAACAGGTATCACTGTGAAAAATCTGAAATCAGCTGTC 1261
Query 1257 CAGGAACTTGGTAAATTACTTGAAGGATTTGAGAAAAAGAACAAGAAGGTCTCTTCT-AG 1315
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1262 CAGGAACTTGGTAAATTGCTTGAAGGATTAGAGAAGAAGAACAAGAAGGTCTCTTCTAAG 1321
Query 1316 TAGTCAGCCGGGCCAATCACCTAGGGAGTCTTTGGAAAGGATACCTCTTCTGTTGAGGGC 1375
|||||| |||||||| | |||| ||||| | |||| |||||||||||||| || |
Sbjct 1322 -AGTCAGGCGGGCCAAGCCCCTAACGAGTCCTCAGAAAAGATACCTCTTCTGTCAAGACC 1380
Query 1376 AAATTTTGATTCTATTTGTGGGGAGAACACTCCTGTTTGTATCATCGGTACCTTCAGATC 1435
||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1381 AAATTTTGACTCCATTTGTGGGGAGAACACTCCTGTTTGTATCATTGGTGCCTTCAGATC 1440
Query 1436 TTCACATGGTAAAGAGAAGTTGCAGTCAGTAATGTCCAAGGTATCCCAGAAATCACTCTC 1495
||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 GTCAAATGGTAAAGAGAAGCTGCAGTCAATAATGTCCAAGGTATCCCAGAAATCACTCTC 1500
Query 1496 TCGACGACAAGCTTCAACCACAGGTTCTCAGGACACAGTATCCTATTCGCTTCTAGACGC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TCGACGACAAGCTTCAACCACAGGTTCTCAGGACACAGTATCCTATTCGCTTCTAGACGC 1560
Query 1556 AACAAAACAATCTGCGTTCTTGAGCTCTCTTGACAAATCAGAGTTCAAAACTTCT---GA 1612
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1561 AACAAAACAATCTGCGTTCTTGAGCTCCCTTGACAAATCAGAGTTCAAAACTTCTTCTGA 1620
Query 1613 TAAGCTCCTAATAGCTTACAAGCCTCGACGAGGTAAGTTTGCTACATTCAAAGGCGATAT 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TAAGCTCCTAATAGCTTACAAGCCTCGACGAGGTAAGTTTGCTACATTCAAAGGCGATAT 1680
Query 1673 GACTATGGAGGAAGTTGAGAAATTCGTAGCAGCTGTTCTCAACGGAGACATACAGTTCAC 1732
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1681 GACTATTGAGGAAGTTGAGAAATTCGTAGCAGCTGTTCTTAACGGAGACATACAGTTCAC 1740
Query 1733 GAAGACAAGACAGAAACCTCAGATCAAATGAGAAAGGTTTTATTTCATCATACACTAGTT 1792
||||||||||||||||| |||||||||||| || | |||| |||||||| ||| |||||
Sbjct 1741 AAAGACAAGACAGAAACCCCAGATCAAATGA-AA-GTTTTT-TTTCATCAGACATTAGTT 1797
Query 1793 TCAGAGATGTACATCGTTTTGGAGGAGAAA-GGGTTATTTTTCACGTTTCCTGTGTTGCA 1851
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1798 TCAGAGATGTACATCGTTTTGGAGGAGAAAAGGGTGATTTTTCACGTTTCCTGTGTTGCA 1857
Query 1852 ATCTGCTTTTGAGTGAAAGTTTGTGTATTGTCAAGAGACGTGAAATAGTTCTATAGGACT 1911
|||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1858 ATCTGCTTTTGACAGTAAGTTTGTGTATTGTCAAGAGACGTGAAACAGTTCTATAGGACT 1917
Query 1912 AGATTTACGTCATTGTACTGAGT 1934
||| ||| |||||||||||||||
Sbjct 1918 AGAATTATGTCATTGTACTGAGT 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96937252395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5