BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478206
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08980.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 894 0.0
> AT3G08980.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr3:2740808-2742685 FORWARD LENGTH=792
Length=792
Score = 894 bits (484), Expect = 0.0
Identities = 561/596 (94%), Gaps = 14/596 (2%)
Strand=Plus/Plus
Query 1 ATAGATGGTTCTATGAATTTTGCTGAGAATC-GTTTATTAGATAGGCCATCTTGGACATG 59
|||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||
Sbjct 96 ATAGATGGTTCTATGAATGTTGCTGAGAATCAG-ATATTAGTTAGGCCATCTTGGACATG 154
Query 60 GGAATCCAGAATATTTTATGGCAAGTGGCAAAGAAATCATTCACTGGAAGTATTATAGGG 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 155 GGAATCCAGAATATTTTATGGCAAGTGGCGAAGAAATCATTCACTGGAAGTATTATAGGG 214
Query 120 CTTACCATTTCAGATAGATGTTGTAGCGTTGTTCCGGTCAGAGGAGATTCCATGTCTCCC 179
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 215 CTTACCATTTCAGATAGATGTTGTAGCGTTGTTCCAGTGAGAGGAGATTCCATGTCTCCC 274
Query 180 ACATTCAATCCCCAGCGGAATTCTTATTTAGATGATTATGTACTCGTGGACAAATTTTGC 239
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 275 ACATTTAATCCCCAGCGGAATTCTTATTTAGATGATTATGTACTTGTGGACAAATTTTGC 334
Query 240 CTTAAGGATTATAAGTTTGCACGTGGTGATGTTGTAGTGTTCAGCTCTCCGACAAATTTC 299
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 335 CTTAAGGATTACAAGTTTGCGCGTGGTGATGTTGTAGTGTTCAGCTCTCCGACACATTTC 394
Query 300 GGGGATAGATACATAAAGAGGATCGTCGGGATGCCTGGCGAATGGATAAGTAGTTCTCGG 359
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 395 GGAGATAGATACATAAAGAGGATAGTCGGGATGCCTGGTGAATGGATAAGTAGTTCTCGG 454
Query 360 GATGTGATCAGAGTCCCAGAAGGTCATTGTTGGGTAGAAGGAGATAACAAAACTTCCAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GATGTGATCAGAGTCCCAGAAGGTCATTGTTGGGTAGAAGGAGATAACAAAACTTCCAGC 514
Query 420 TTAGACTCAAGAACCTTTGGCCCTATTCCTTTGGGTTTAATTCAAGGAAGGGTCACTCGT 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TTAGACTCAAGATCCTTTGGCCCTATTCCTTTGGGTTTAATTCAAGGAAGGGTCACTCGT 574
Query 480 GTCTTGTGGCCTCCTCAAAGAATAAGCAAGATTGGTC-AGTAAAGCTAATGGAGAAGAAG 538
||| |||||||||||||||||||||||||||| |||| | ||| ||||||||||||
Sbjct 575 GTCATGTGGCCTCCTCAAAGAATAAGCAAGATCGGTCGA-TAATGCTAATGGAGAA---- 629
Query 539 AAGAATGAAAAGGACTTCTCCATGTTCCTCAAGATTTTCTATGGGAACTCTCAAAT 594
|||||||||| ||||||||||||||||||| | ||||||||| ||||||||
Sbjct 630 -----TGAAAAGGACGTCTCCATGTTCCTCAAGATCT-CTATGGGAATTCTCAAAT 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5