BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478207
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08990.1 | Symbols: | Yippee family putative zinc-binding p... 1083 0.0
> AT3G08990.1 | Symbols: | Yippee family putative zinc-binding
protein | chr3:2743076-2744932 FORWARD LENGTH=868
Length=868
Score = 1083 bits (586), Expect = 0.0
Identities = 687/734 (94%), Gaps = 13/734 (2%)
Strand=Plus/Plus
Query 32 CATTTTCCACTCGGCGGTCTTGCGAACTACGCAAGTTTTCTTAGTTGCTACTATTTCGTT 91
||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 68 CATTTTCCACTCGGC-GTCTTGCGAACTACGCAAG-TTTCTTAGTTACTACTATTTCGTT 125
Query 92 ACCttttttttttGACATTTTGATCGAAAGCTTTTTCTCGAGATTAACGCTCT-CTCCtt 150
||| |||||||| |||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 126 ACC---TTTTTTTGGCATTTTGATCGAAAGCCTTTTCTCGAGATTAACGCTCTCCGCCCT 182
Query 151 tttttCCATTTTATACCAATTTAATGTTGTATTTCGTGAAACGCAAACTATTTTCTGGTT 210
||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||
Sbjct 183 TTTTTCCATTTTATACCAATTAAATGTTGTGTTTCGTGAAACGCGAACTATTCTCTGGTA 242
Query 211 GGTGGATTTGTTCGAAATGGGAAGACCATTTGTGATAGACCTCGAAGGACTGGTTTATAG 270
||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 243 GGTGGGTTTGTTCGAAATGGGAAGACTATTCGTGATAGACCTCGAAGGACTGGTTTATAG 302
Query 271 CTGCAAGCATTGTCAGACACATTTCGCAGTTACTAATGACATTATCTCAAAGTCATTTCA 330
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 CTGCAAGTATTGTCAGACACATTTCGCAGTTACTAATGATATTATCTCAAAGTCATTTCA 362
Query 331 CTGCAAGCACGGAAGGGCTTATCTTTTCGACAATGTTGTCAATGTAACGGTTGGAGAGAA 390
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 363 CTGCAAACACGGAAGGGCTTATCTTTTCGACAATGTTGTCAATGTGACGGTTGGAGAGAA 422
Query 391 GGAGCATCGCGTCATGCTGACTGGTTGGCACACTGTAGCTGACATCTTCTGTGTTAGCTG 450
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGAGCATCGCGTCATGATAACTGGTTGGCACACTGTAGCTGACATCTTCTGTGTTAGCTG 482
Query 451 TGGCTCTCTTGTTGGCTGGAAATACGAATTCGCTTACGACAAGTCTCAGAAGTACAAGGA 510
|||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 483 TGGCTCTCTTGTCGGCTGGAAATACGAAATCGCTTACGATAAGTCTCAGAAATACAAGGA 542
Query 511 AGGAAAATTCATCATAGAAAGGTTTAAGGTGCTTGGGCCCGATGGAGGAGGATACGACAT 570
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 543 AGGAAAATTCATCTTAGAAAGGTTTAAGGTGCTTGGGCCCTATGGAGGAGGATACGACAT 602
Query 571 GAACCAGGACGAGCCTATGACTGGAAGCGATGA--A-GAATAAAAATATGGTATATCTCT 627
||||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| |
Sbjct 603 GAACCAGAACGAGCCTATGACTGGAAGCGATGATGAAGAATAAAAATATGGTATCTCTGT 662
Query 628 TATTTTAACGACCCATTGGAAATATTTGGCAAGTGGTCAATGCTTCGTATAGACTATCGG 687
||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 663 TATTT-AACGACCCATTGGAAATACTTGGAAAGTGGTCAATGCTTCGTATAGACTATCGG 721
Query 688 CT-ACCGGCAAACTCGCCGGGAAGAAAAATCAACATTTTTTCGGGTAAGCGTTCACAAGA 746
| ||||| |||||||||||||| |||| |||||||||||||| ||||||||||| ||||
Sbjct 722 -TGACCGGGAAACTCGCCGGGAA-AAAATTCAACATTTTTTCGTGTAAGCGTTCAAAAGA 779
Query 747 AACCAAATATTCAt 760
||||||||||||||
Sbjct 780 AACCAAATATTCAT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39684976130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5