BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478210
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09020.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 1836 0.0
> AT3G09020.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr3:2753307-2754621 FORWARD LENGTH=1315
Length=1315
Score = 1836 bits (994), Expect = 0.0
Identities = 1161/1242 (93%), Gaps = 9/1242 (1%)
Strand=Plus/Plus
Query 1 ATGGATAATGAAATCGCGAAGAAAGTCACGGCGATATTTGATCACCGGAGGTTAAACCGC 60
|||||| |||| ||| ||| |||||||| |||||| ||||||||||| ||||||||||||
Sbjct 1 ATGGATCATGACATCACGACGAAAGTCAGGGCGATGTTTGATCACCGTAGGTTAAACCGC 60
Query 61 TCTGGATCATCACTCTACACAGCGTTTGCTTCCACGGTTATAGCTCTGGTCGTTTTCACC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGGATCATCACTCTTCACAGCGTTTGCTTCCACGGTTATAGCTCTGGTCGTTTTCACC 120
Query 121 ATCGTTCTCGTCTCTAATTTATCGGTGAGAGGAGATTTCTCGGCGAAGGTGGTGACAATA 180
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 121 ATCGTTCTCGTCTCTAATTTATCGGTGAGAGAAGATTTCTCAGCGAAGGTGGTGACAATA 180
Query 181 GAGATCAAGACAGTTGTTCCTTACTTATTACCTCTAAGCTCAGAGAAGGAGGTAAGTGAT 240
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GAGATCAAGACAATTGTTCCTTACTTA---CCTCTAAGCTCAGAGAAGGAGGTAAGTGAT 237
Query 241 CAAGGCAACAGTAACTATTCGATCAAACAACAAATCACAGTCAAAGA-GATTGAT-AACA 298
|||| ||||| ||||||||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 238 CAAGTCAACAATAACTATTCGATCAAGCAACAAATCACAGTCAAAGAAGA--GATTAACA 295
Query 299 ATCTTCAAGTTATTGAAGTTTTTGGAGGCAAAGGCGTGTCGGAGAAGTTTCAACAGAGAG 358
| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 AACTGCAAGTTCTTGAAGTTTTTGGAGGCAAAGACGTGTCGGAGAAGTTTCAACAGAGAG 355
Query 359 CAACAGAGTTTTTAAGAGATGATTGTGAGGTCAAGTTCATGATGACATGGATCTCACCTG 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAACAGAGTTTTTGAGAGATGATTGTGAGGTCAAGTTCATGATGACATGGATCTCACCTG 415
Query 419 CGGAATTGTTCGGTAAGAGAGAGATTTTGTCTGTCGAAAGCGTCTTTAAATCTCATCCTC 478
||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| ||
Sbjct 416 CGGAATTGTTCGGTAAGAGAGAGATATTATCTGTAGAAAGCGTATTCAAATCTCATGCTA 475
Query 479 GAGGTTGTTTGATGATTTTATCATCCACAATGGATTCTCCTCAAGGGTTTAGTATCTTGA 538
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 476 GAGGTTGTTTGATGATTTTATCATCCACAATGGATTCTCTTCAAGGGTTTAGAATCCTGA 535
Query 539 AACCATTTCTTGATGGAGGTTACAGAGTAATGGCGGTCACACCGGATTTGCATTTTCTTC 598
|||| ||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 536 AACCGTTTCTTGATCGAGGTTACAGAGTTATGGCGGTCACGCCGGATTTGCCTTTTCTTC 595
Query 599 TCAAGGACACAGCCGGAGAATCAAGGCTTGAAGAGATTCAGACAGGTAAAAGAGATCCCG 658
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 596 TCAAGGACACAGCCGGAGAATCTTGGCTTGAAGAGATTCAGACCGGTAAAAGAGATCCAG 655
Query 659 GAAAGATCTCTCTAGCTCAAAATCTATCAAACCTCATGAGACTCGCTTATCTGTAT-AAA 717
||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| | |||
Sbjct 656 GAAAGATCTCTCTAGCTCAGAATCTATCAAACCTCATGAGACTTGCTTATTTGT-TCAAA 714
Query 718 TTCGGAGGTGTTTATTTAGACACGGACATGATTGTTTTAAAGAGCTTTAAAACTCTTAGG 777
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 715 TTCGGAGGTGTTTATCTAGACACAGACATGATTGTTTTAAAGAGCTTTAAAACTCTAAGG 774
Query 778 AACGTGATCGGTGCACAGACTCTCGAACCGGTTTCGAGAAACTGGACAAGATTGAACAAT 837
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 775 AACGTGATCGGTGCGCAGACTCTGGAGCCGGTTTCGAGAAACTGGACAAGATTGAACAAT 834
Query 838 GCGGTTTTGATCTTCGACAAGAATCATCCTTTCTTGCTCAAATCCATTGAAGAATTCGCG 897
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 835 GCGGTATTGATCTTCGACAAGAATCATCCATTCTTGCTCAAATCCATTGAAGAATTTGCG 894
Query 898 TTGACTTTTAATGGAAACGTTTGGGGTCATAACGGACCGTATCTTGTTTCTCGAGTGGCT 957
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 895 TTGACTTTTAATGGAAACGTTTGGGGACATAACGGACCGTATCTTGTTTCACGAGTGGCT 954
Query 958 CGAGCCGTGGAAGGAACCGATGGCTATAACTTTACAATCATGACACCTCCTGCGTTTTAT 1017
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 955 CGAGCCGTGGAAGGAACCGATGGCTATAACTTCACCATCTTGACACCTCCTGCGTTTTAT 1014
Query 1018 CCAGTGAATTGGGTTGAGATTGAGAAGCTATTCAAGGTTCCAAGAACCGAGAAAGATTCA 1077
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1015 CCAGTGAATTGGGTTGAGATTGAGAAGCTATTCAAGGTTCCAAGAACAGAGAAAGATTCA 1074
Query 1078 AAGAGGGTTAAAGTCAAGGTTCTTGAAATGCAAAAGAGAAGCTATGGATTGCATTTGTGG 1137
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 AAGAGAGTTCAAGTCAAGGTTCTTGAAATGCAGAAGAGAAGCTATGGATTGCATTTGTGG 1134
Query 1138 AATAAGTTTAGCAGTAAATTTGAAATTGAACAAGGAAGTACCATGGATCAACTAATTTCA 1197
|||||||||||||| ||||| |||||||||||||||||| |||||||| || | |||||
Sbjct 1135 AATAAGTTTAGCAGAAAATTCGAAATTGAACAAGGAAGTGCCATGGATAAATTGGTTTCA 1194
Query 1198 GATCACTGTATAATCTGTGATAGTGTTGTCTCTGTATCGTGA 1239
|||| |||||||| ||||| |||||||| |||||||| |||
Sbjct 1195 AATCAATGTATAATTTGTGACAGTGTTGTATCTGTATCATGA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5